Clone Sequence Records
BS07211.3prime Sequence
886 bp (884 high quality bases) assembled on 2006-01-06
> BS07211.3prime
ATGGTCTAGAAAGCTTTCACTTCTTGGCATCGATGATGATCTCGTCGCCC
GACTGGATGTTGTAGCTGTACAACTGCTTGTTGGGGTACCTCATCTCCTC
CGGCCCGAATTCCTTGTAGTCCTGATCCAGATAGTAGAGGCGCATCTTGT
TGGGCGCCAGACCCACCAGCTTCTCCAGCTTCACCTTCAAATCGTTGACG
GTCAGATAGATGTCCACGAACCGGCTCTCGCTCACATCGTTGTAGGTGAA
CAGGACCTTGACCCGCTTGTCTGGTTTCAGGCTCACATTGACCAAGGGAT
CCAGCTTGCCGTGGATCTGCAGAAGCTCTTGGTAGCGCGCAGGCCGTTCC
TCCTCCGGCTTGTCCATATAGTATCTGACAAAAGCTCGCTCCGAGTCGAC
GCGCTCATCGCTACTGATCTTGCCGCCTCCGTTGAGCATCTCCACGTTGG
GCAGCCTGGCTATCAGGAGCTGCCTTCTCTCGTGCTCCGTGCACTCCAGA
CTTTCCCAGAGGGGCCAGTGTTTCACACGGAGGTTGCGTAGCTCGCTAAA
CTTGGCCAGCTCATCGATGGCCGCCCAGCTATCCAGTTGCGCGGAACTTA
GGTTCAAAAGCCTCAGGCTGGGGAAGTATCTATGTGTCTCGCTGCTCTCC
TCGGCCTGCAGCGATTTGATGGGACAGTCTGCCAGAACGAGGGCCTCGAG
GTTGGGAAACAGCCGGCCCAGCCGGCAGATTTCCTGCCAGTGCTCGACGG
GATTACCGGTGAAATGCAGGGTCTTTAGAGCAGGATGTGCTTTGGTGATT
CGCCGCTCGGTTTCCTCTGGCGTTTCCGTTTCCTGCAGCCGCTGTTCCGC
CTCCTCAGCATCGATCAGCACCTGCCTGTAGTTGTT
BS07211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12214-PB | 1380 | CG12214-RB | 511..1380 | 886..17 | 4350 | 100 | Minus |
| CG12214-PA | 1380 | CG12214-RA | 511..1380 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mlt-RC | 2669 | CG12214-RC | 1046..1915 | 886..17 | 4350 | 100 | Minus |
| mlt-RA | 2195 | CG12214-RA | 1046..1915 | 886..17 | 4350 | 100 | Minus |
| mlt-RB | 2542 | CG12214-RB | 1393..2262 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10156670..10157539 | 17..886 | 4350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:58:40 has no hits.
BS07211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:46 Download gff for
BS07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-PA | 511..1380 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:15 Download gff for
BS07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-PA | 511..1380 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:20 Download gff for
BS07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 1393..2265 | 13..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:53 Download gff for
BS07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 1393..2265 | 13..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:53 Download gff for
BS07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10156667..10157539 | 13..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:20 Download gff for
BS07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6044172..6045044 | 13..886 | 99 | | Plus |
BS07211.5prime Sequence
922 bp (857 high quality bases) assembled on 2006-01-06
> BS07211.5prime
GAAGTTATCAGTCGACATGCCTTCCCTTTTGGAGGCGCTGGAGCGCAAGT
ACTTCGCAGAATGCGAATTCGAGAATGCCCACCAACCGGAACTCCACAAA
CGAAGCGACCTGCCCAATGACTTTACGGTCACCAAGTGCGGCGGACGCAT
GGAGTTCTCCATCTTCATACCCCGCCTATCCCCGCTGACCAGTGTGCCAG
CCTTGCTAGTCCTCAACGACTGTGACATCGATTCGGCCGGGGACTTCGAC
AGCATCCGGGAGAAGTGCCAGCGGGTGAGGGAACTGGATCTGGCCCAGAA
CAAGCTGAGCGACTGGTCGGAGGTCTTCAGCATACTGGAGCACATGCCGC
GCATTGAGTTCCTCAACCTGAGCAAGAACCAGCTGGCCAGTCCGATCGGC
ACGTTGCCCACGGCTCCCACGATCAATCTGAAGAGCCTGGTGCTGAACGG
CACCTACTTGGACTGGGCCTGCGTGGATACCCTGCTGAAGAATTTGCCCG
TGCTCCAGGAACTGCATCTCAGCCTGAACAACTACAGGCAGGTGCTGATC
GATGCTGAGGAGGCGGAACAGCGGCTGCAGGAAACGGAAACGCCAGAGGA
AACCGAGCGGCGAATCACCAAAGCACATCCTGCTCTAAAGACCCTGCATT
TCACCGGTAATCCCGTCGAGCACTGGCAGGAAATCTGCCGGCTGGGCCGG
CTGTTTCCCAACCTCGAGGCCCTCGTTCTGGCAGACTGTCCCATCAAATC
GCTGCAGGCCGAGGAGAGCAGCGAGACACATAGATACTTCCCCAGCCTGA
GGCTTTTGAACCTAAGTTCCGCGCAACTGGATAGCTGGGCGGCCATCGAT
GAGCTGGCCAAGTTTAGCGAGCTACGCAACCTCCGTGTGAAACACTGGCC
CCTCTGGGAAAGTCTGGAGTGC
BS07211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12214-PB | 1380 | CG12214-RB | 1..906 | 17..922 | 4530 | 100 | Plus |
| CG12214-PA | 1380 | CG12214-RA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mlt-RC | 2669 | CG12214-RC | 536..1441 | 17..922 | 4530 | 100 | Plus |
| mlt-RA | 2195 | CG12214-RA | 536..1441 | 17..922 | 4530 | 100 | Plus |
| mlt-RB | 2542 | CG12214-RB | 883..1788 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10157144..10158049 | 922..17 | 4530 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 20:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 2799..2853 | 484..538 | 113 | 67.3 | Plus |
BS07211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:47 Download gff for
BS07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-PA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:16 Download gff for
BS07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-PA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:14 Download gff for
BS07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 878..1788 | 12..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:24 Download gff for
BS07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 878..1788 | 12..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:24 Download gff for
BS07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10157144..10158054 | 12..922 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:14 Download gff for
BS07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6044649..6045559 | 12..922 | 99 | | Minus |
BS07211.complete Sequence
1412 bp (1412 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635768
> BS07211.complete
GAAGTTATCAGTCGACATGCCTTCCCTTTTGGAGGCGCTGGAGCGCAAGT
ACTTCGCAGAATGCGAATTCGAGAATGCCCACCAACCGGAACTCCACAAA
CGAAGCGACCTGCCCAATGACTTTACGGTCACCAAGTGCGGCGGACGCAT
GGAGTTCTCCATCTTCATACCCCGCCTATCCCCGCTGACCAGTGTGCCAG
CCTTGCTAGTCCTCAACGACTGTGACATCGATTCGGCCGGGGACTTCGAC
AGCATCCGGGAGAAGTGCCAGCGGGTGAGGGAACTGGATCTGGCCCAGAA
CAAGCTGAGCGACTGGTCGGAGGTCTTCAGCATACTGGAGCACATGCCGC
GCATTGAGTTCCTCAACCTGAGCAAGAACCAGCTGGCCAGTCCGATCGGC
ACGTTGCCCACGGCTCCCACGATCAATCTGAAGAGCCTGGTGCTGAACGG
CACCTACTTGGACTGGGCCTGCGTGGATACCCTGCTGAAGAATTTGCCCG
TGCTCCAGGAACTGCATCTCAGCCTGAACAACTACAGGCAGGTGCTGATC
GATGCTGAGGAGGCGGAACAGCGGCTGCAGGAAACGGAAACGCCAGAGGA
AACCGAGCGGCGAATCACCAAAGCACATCCTGCTCTAAAGACCCTGCATT
TCACCGGTAATCCCGTCGAGCACTGGCAGGAAATCTGCCGGCTGGGCCGG
CTGTTTCCCAACCTCGAGGCCCTCGTTCTGGCAGACTGTCCCATCAAATC
GCTGCAGGCCGAGGAGAGCAGCGAGACACATAGATACTTCCCCAGCCTGA
GGCTTTTGAACCTAAGTTCCGCGCAACTGGATAGCTGGGCGGCCATCGAT
GAGCTGGCCAAGTTTAGCGAGCTACGCAACCTCCGTGTGAAACACTGGCC
CCTCTGGGAAAGTCTGGAGTGCACGGAGCACGAGAGAAGGCAGCTCCTGA
TAGCCAGGCTGCCCAACGTGGAGATGCTCAACGGAGGCGGCAAGATCAGT
AGCGATGAGCGCGTCGACTCGGAGCGAGCTTTTGTCAGATACTATATGGA
CAAGCCGGAGGAGGAACGGCCTGCGCGCTACCAAGAGCTTCTGCAGATCC
ACGGCAAGCTGGATCCCTTGGTCAATGTGAGCCTGAAACCAGACAAGCGG
GTCAAGGTCCTGTTCACCTACAACGATGTGAGCGAGAGCCGGTTCGTGGA
CATCTATCTGACCGTCAACGATTTGAAGGTGAAGCTGGAGAAGCTGGTGG
GTCTGGCGCCCAACAAGATGCGCCTCTACTATCTGGATCAGGACTACAAG
GAATTCGGGCCGGAGGAGATGAGGTACCCCAACAAGCAGTTGTACAGCTA
CAACATCCAGTCGGGCGACGAGATCATCATCGATGCCAAGAAGTGAAAGC
TTTCTAGACCAT
BS07211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mlt-RC | 1380 | CG12214-PC | 1..1380 | 17..1396 | 6900 | 100 | Plus |
| mlt-RA | 1380 | CG12214-PA | 1..1380 | 17..1396 | 6900 | 100 | Plus |
| mlt-RB | 1380 | CG12214-PB | 1..1380 | 17..1396 | 6900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mlt-RC | 2669 | CG12214-RC | 536..1915 | 17..1396 | 6900 | 100 | Plus |
| mlt-RA | 2195 | CG12214-RA | 536..1915 | 17..1396 | 6900 | 100 | Plus |
| mlt-RB | 2542 | CG12214-RB | 883..2262 | 17..1396 | 6900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10156670..10158049 | 1396..17 | 6900 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 2799..2853 | 484..538 | 113 | 67.3 | Plus |
BS07211.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:52 Download gff for
BS07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-RA | 1..1380 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:02 Download gff for
BS07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-RA | 513..1900 | 12..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:02 Download gff for
BS07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 883..2261 | 17..1395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:52 Download gff for
BS07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-RA | 513..1900 | 12..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:58 Download gff for
BS07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 883..2261 | 17..1395 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:58 Download gff for
BS07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10156671..10158049 | 17..1395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:02 Download gff for
BS07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6044176..6045554 | 17..1395 | 100 | | Minus |
BS07211.pep Sequence
Translation from 16 to 1395
> BS07211.pep
MPSLLEALERKYFAECEFENAHQPELHKRSDLPNDFTVTKCGGRMEFSIF
IPRLSPLTSVPALLVLNDCDIDSAGDFDSIREKCQRVRELDLAQNKLSDW
SEVFSILEHMPRIEFLNLSKNQLASPIGTLPTAPTINLKSLVLNGTYLDW
ACVDTLLKNLPVLQELHLSLNNYRQVLIDAEEAEQRLQETETPEETERRI
TKAHPALKTLHFTGNPVEHWQEICRLGRLFPNLEALVLADCPIKSLQAEE
SSETHRYFPSLRLLNLSSAQLDSWAAIDELAKFSELRNLRVKHWPLWESL
ECTEHERRQLLIARLPNVEMLNGGGKISSDERVDSERAFVRYYMDKPEEE
RPARYQELLQIHGKLDPLVNVSLKPDKRVKVLFTYNDVSESRFVDIYLTV
NDLKVKLEKLVGLAPNKMRLYYLDQDYKEFGPEEMRYPNKQLYSYNIQSG
DEIIIDAKK*
BS07211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mlt-PC | 459 | CG12214-PC | 1..459 | 1..459 | 2390 | 100 | Plus |
| mlt-PA | 459 | CG12214-PA | 1..459 | 1..459 | 2390 | 100 | Plus |
| mlt-PB | 459 | CG12214-PB | 1..459 | 1..459 | 2390 | 100 | Plus |
