Clone BS07212 Report

Search the DGRC for BS07212

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG4995-RA
Protein status:BS07212.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07212.3prime Sequence

925 bp (772 high quality bases) assembled on 2006-01-06

> BS07212.3prime
ATGGTCTAGAAAGCTTTTATTTTAAATTACAATCGGATGCTAAACGTGCT
TTAGATTCTTTGGGAATGTTGATTGTGCTACTCGTGTAATGGCTGTGAAC
GACATCCTTTGGCGTGGACACATACTGATGGGACATGGCATTGTCCGTGA
TTATTTTGCGCACCACTTCCTCAACCGTTGGCGCCGTCGCCTCCAAGTCC
GCTTGGCTCTTGTTGTCTAGGTTGACGAGAGTCAGTGGCTGATCGGAATG
CATTACGGAATCCATGCCGCCCTTGGCATTGCAGATGTCCAGTACCCAGG
ACACCACAAAGAAGCAGGCGGCGTTCATCGGAAAAGCCCGGATCAAGGTG
GAGTTTAGACCGCGAAAGAAGTACTGCGGTCCCTCGTTCCTAAAGCCCTT
CATGGCACAGTCGATGAAGCCATTGTATTTGGCATTCGCGCCCAGGGCAT
CGGCCTGCATGTGGGTCTTCACCACGTCGATGGGGTAGCACGCCAACCAG
GACGACATGCCAGCACATCCGCCGGCCATTAGAGTGTACGCAACGCCGGG
TGTCTCCACTTGACGCATAAGGTACTCGAAGGACACAAAGTAGCTGGCAA
AGCCTGGAATATCCCTTAGAATGGTGGCTGTTAATCCCTTGAAGGCACCT
CTGATACCCTCCGTTTTTACTATGTACTTGAGGCAGTGAATGGGTCCAGT
GAACTTGATGCCGCTATCAACCTGCGTGGACAATTGGAGTCGCGTTTTGG
CCAACTCCATGGGCGCACACACGAAACCCTGGGCGACACCAGCGATGGAG
CCAGCGAAGAAGTGTGACGTCAGCGAATTGGGGTCATTGGACAAGCGTTG
CACGTTTCCGTAGACCCCGAAAACGATGGCGTTCACCAATCCGATTCCTC
CCATGGGACTGCTGATACCACGATA

BS07212.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4995-PA 1200 CG4995-RA 292..1200 925..17 4545 100 Minus
CG4995-PC 1083 CG4995-RC 175..1083 925..17 4545 100 Minus
CG4995-PB 1200 CG4995-RB 292..1200 925..17 4545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4995-RD 1246 CG4995-RD 313..1222 925..16 4550 100 Minus
CG4995-RB 1431 CG4995-RB 498..1407 925..16 4550 100 Minus
CG4995-RC 1205 CG4995-RC 272..1181 925..16 4550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10324375..10324966 607..16 2960 100 Minus
2L 23513712 2L 10323988..10324310 925..603 1615 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:19:28 has no hits.

BS07212.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:48 Download gff for BS07212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4995-PC 176..1083 17..924 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:18 Download gff for BS07212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4995-PB 293..1200 17..924 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:54:07 Download gff for BS07212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4995-RC 273..1181 16..924 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:43:29 Download gff for BS07212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4995-RC 273..1181 16..924 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:43:29 Download gff for BS07212.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10323989..10324309 604..924 100 -> Minus
2L 10324379..10324966 16..603 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:07 Download gff for BS07212.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10323989..10324309 604..924 100 -> Minus
arm_2L 10324379..10324966 16..603 100   Minus

BS07212.5prime Sequence

948 bp (867 high quality bases) assembled on 2006-01-06

> BS07212.5prime
GAAGTTATCAGTCGACATGTATCCAATAACGTTTATATATCGTGTCAACA
ATGATAAGGATCCCTACCGGAAGAGAGGTTCAGAGATCGGCGACATTCAA
CTAAAGGCCACCTCTGAAACTTTTTCTCCAAAAATGGTTGTGGATTTCGT
AGCCGGACTCCTGGGCGGAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCG
ATACCGTGAAGGTCCACCTGCAAACCGATGATCCTCGCAATCCCAAGTAC
AAAGGCACATTCCACTGCTTCCGGACGATAGTGCAAAGAGACAAATTCAT
AGGATTATATCGTGGTATCAGCAGTCCCATGGGAGGAATCGGATTGGTGA
ACGCCATCGTTTTCGGGGTCTACGGAAACGTGCAACGCTTGTCCAATGAC
CCCAATTCGCTGACGTCACACTTCTTCGCTGGCTCCATCGCTGGTGTCGC
CCAGGGTTTCGTGTGTGCGCCCATGGAGTTGGCCAAAACGCGACTCCAAT
TGTCCACGCAGGTTGATAGCGGCATCAAGTTCACTGGACCCATTCACTGC
CTCAAGTACATAGTAAAAACGGAGGGTATCAGAGGTGCCTTCAAGGGATT
AACAGCCACCATTCTAAGGGATATTCCAGGCTTTGCCAGCTACTTTGTGT
CCTTCGAGTACCTTATGCGTCAAGTGGAGACACCCGGCGTTGCGTACACT
CTAATGGCCGGCGGATGTGCTGGCATGTCGTCCTGGTTGGCGTGCTACCC
CATCGACGTGGTGAAGACCCACATGCAGGCCGATGCCCTGGGCGCGAATG
CCAAATACAATGGCTTCATCGACTGTGCCATGAAGGGCTTTAGGAACGAG
GGACCGCAGTACTTCTTTCGCGGTCTAAACTCCACCTTGATCCGGGCTTT
TTCCGATGAACGCCGCCTGCTTCTTTGTGGTGTCCTGGGTACTGGACA

BS07212.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4995-PA 1200 CG4995-RA 1..885 17..901 4425 100 Plus
CG4995-PB 1200 CG4995-RB 1..885 17..901 4425 100 Plus
CG4995-PC 1083 CG4995-RC 1..768 134..901 3840 100 Plus
CG4995-PA 1200 CG4995-RA 882..931 899..948 250 100 Plus
CG4995-PB 1200 CG4995-RB 882..931 899..948 250 100 Plus
CG4995-PC 1083 CG4995-RC 765..814 899..948 250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4995-RB 1431 CG4995-RB 207..1137 17..948 4635 99.9 Plus
CG4995-RA 1417 CG4995-RA 193..1123 17..948 4635 99.9 Plus
CG4995-RD 1246 CG4995-RD 64..952 59..948 4425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10323847..10324310 167..630 2320 100 Plus
2L 23513712 2L 10324375..10324696 626..948 1565 99.7 Plus
2L 23513712 2L 10323669..10323780 57..168 560 100 Plus
2L 23513712 2L 10322793..10322835 17..59 215 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:26:49 has no hits.

BS07212.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:49 Download gff for BS07212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4995-PB 1..930 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:19 Download gff for BS07212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4995-PB 1..930 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:10 Download gff for BS07212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4995-RA 184..1122 7..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:52 Download gff for BS07212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4995-RA 184..1122 7..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:52 Download gff for BS07212.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10322784..10322834 7..58 92 -> Plus
2L 10323671..10323779 59..167 100 -> Plus
2L 10323848..10324309 168..629 100 -> Plus
2L 10324379..10324695 630..947 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:10 Download gff for BS07212.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10322784..10322834 7..58 92 -> Plus
arm_2L 10323671..10323779 59..167 100 -> Plus
arm_2L 10323848..10324309 168..629 100 -> Plus
arm_2L 10324379..10324695 630..947 99   Plus

BS07212.complete Sequence

1232 bp (1232 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635769

> BS07212.complete
GAAGTTATCAGTCGACATGTATCCAATAACGTTTATATATCGTGTCAACA
ATGATAAGGATCCCTACCGGAAGAGAGGTTCAGAGATCGGCGACATTCAA
CTAAAGGCCACCTCTGAAACTTTTTCTCCAAAAATGGTTGTGGATTTCGT
AGCCGGACTCCTGGGCGGAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCG
ATACCGTGAAGGTCCACCTGCAAACCGATGATCCTCGCAATCCCAAGTAC
AAAGGCACATTCCACTGCTTCCGGACGATAGTGCAAAGAGACAAATTCAT
AGGATTATATCGTGGTATCAGCAGTCCCATGGGAGGAATCGGATTGGTGA
ACGCCATCGTTTTCGGGGTCTACGGAAACGTGCAACGCTTGTCCAATGAC
CCCAATTCGCTGACGTCACACTTCTTCGCTGGCTCCATCGCTGGTGTCGC
CCAGGGTTTCGTGTGTGCGCCCATGGAGTTGGCCAAAACGCGACTCCAAT
TGTCCACGCAGGTTGATAGCGGCATCAAGTTCACTGGACCCATTCACTGC
CTCAAGTACATAGTAAAAACGGAGGGTATCAGAGGTGCCTTCAAGGGATT
AACAGCCACCATTCTAAGGGATATTCCAGGCTTTGCCAGCTACTTTGTGT
CCTTCGAGTACCTTATGCGTCAAGTGGAGACACCCGGCGTTGCGTACACT
CTAATGGCCGGCGGATGTGCTGGCATGTCGTCCTGGTTGGCGTGCTACCC
CATCGACGTGGTGAAGACCCACATGCAGGCCGATGCCCTGGGCGCGAATG
CCAAATACAATGGCTTCATCGACTGTGCCATGAAGGGCTTTAGGAACGAG
GGACCGCAGTACTTCTTTCGCGGTCTAAACTCCACCTTGATCCGGGCTTT
TCCGATGAACGCCGCCTGCTTCTTTGTGGTGTCCTGGGTACTGGACATCT
GCAATGCCAAGGGCGGCATGGATTCCGTAATGCATTCCGATCAGCCACTG
ACTCTCGTCAACCTAGACAACAAGAGCCAAGCGGACTTGGAGGCGACGGC
GCCAACGGTTGAGGAAGTGGTGCGCAAAATAATCACGGACAATGCCATGT
CCCATCAGTATGTGTCCACGCCAAAGGATGTCGTTCACAGCCATTACACG
AGTAGCACAATCAACATTCCCAAAGAATCTAAAGCACGTTTAGCATCCGA
TTGTAATTTAAAATAAAAGCTTTCTAGACCAT

BS07212.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4995-RB 1200 CG4995-PB 1..1200 17..1216 6000 100 Plus
CG4995-RA 1200 CG4995-PA 1..1200 17..1216 6000 100 Plus
CG4995-RD 1083 CG4995-PD 1..1083 134..1216 5415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4995-RB 1431 CG4995-RB 207..1407 17..1217 6005 100 Plus
CG4995-RA 1417 CG4995-RA 193..1393 17..1217 6005 100 Plus
CG4995-RD 1246 CG4995-RD 64..1222 59..1217 5795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10324375..10324966 626..1217 2960 100 Plus
2L 23513712 2L 10323847..10324310 167..630 2320 100 Plus
2L 23513712 2L 10323669..10323780 57..168 560 100 Plus
2L 23513712 2L 10322793..10322835 17..59 215 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:51:41 has no hits.

BS07212.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:08 Download gff for BS07212.complete
Subject Subject Range Query Range Percent Splice Strand
CG4995-RB 1..1200 17..1216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:31 Download gff for BS07212.complete
Subject Subject Range Query Range Percent Splice Strand
CG4995-RB 198..1407 7..1217 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:38 Download gff for BS07212.complete
Subject Subject Range Query Range Percent Splice Strand
CG4995-RA 193..1390 17..1214 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:08 Download gff for BS07212.complete
Subject Subject Range Query Range Percent Splice Strand
CG4995-RB 198..1407 7..1217 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:10 Download gff for BS07212.complete
Subject Subject Range Query Range Percent Splice Strand
CG4995-RA 193..1390 17..1214 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:10 Download gff for BS07212.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10322793..10322834 17..58 100 -> Plus
2L 10323671..10323779 59..167 100 -> Plus
2L 10323848..10324309 168..629 100 -> Plus
2L 10324379..10324963 630..1214 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:38 Download gff for BS07212.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10323848..10324309 168..629 100 -> Plus
arm_2L 10322793..10322834 17..58 100 -> Plus
arm_2L 10323671..10323779 59..167 100 -> Plus
arm_2L 10324379..10324963 630..1214 100   Plus

BS07212.pep Sequence

Translation from 16 to 1215

> BS07212.pep
MYPITFIYRVNNDKDPYRKRGSEIGDIQLKATSETFSPKMVVDFVAGLLG
GAAGVLVGHPFDTVKVHLQTDDPRNPKYKGTFHCFRTIVQRDKFIGLYRG
ISSPMGGIGLVNAIVFGVYGNVQRLSNDPNSLTSHFFAGSIAGVAQGFVC
APMELAKTRLQLSTQVDSGIKFTGPIHCLKYIVKTEGIRGAFKGLTATIL
RDIPGFASYFVSFEYLMRQVETPGVAYTLMAGGCAGMSSWLACYPIDVVK
THMQADALGANAKYNGFIDCAMKGFRNEGPQYFFRGLNSTLIRAFPMNAA
CFFVVSWVLDICNAKGGMDSVMHSDQPLTLVNLDNKSQADLEATAPTVEE
VVRKIITDNAMSHQYVSTPKDVVHSHYTSSTINIPKESKARLASDCNLK*

BS07212.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4995-PB 399 CG4995-PB 1..399 1..399 2095 100 Plus
CG4995-PA 399 CG4995-PA 1..399 1..399 2095 100 Plus
CG4995-PD 360 CG4995-PD 1..360 40..399 1889 100 Plus
CG4995-PC 360 CG4995-PC 1..360 40..399 1889 100 Plus
CG3476-PA 299 CG3476-PA 15..299 41..314 403 37.4 Plus