Clone Sequence Records
BS07212.3prime Sequence
925 bp (772 high quality bases) assembled on 2006-01-06
> BS07212.3prime
ATGGTCTAGAAAGCTTTTATTTTAAATTACAATCGGATGCTAAACGTGCT
TTAGATTCTTTGGGAATGTTGATTGTGCTACTCGTGTAATGGCTGTGAAC
GACATCCTTTGGCGTGGACACATACTGATGGGACATGGCATTGTCCGTGA
TTATTTTGCGCACCACTTCCTCAACCGTTGGCGCCGTCGCCTCCAAGTCC
GCTTGGCTCTTGTTGTCTAGGTTGACGAGAGTCAGTGGCTGATCGGAATG
CATTACGGAATCCATGCCGCCCTTGGCATTGCAGATGTCCAGTACCCAGG
ACACCACAAAGAAGCAGGCGGCGTTCATCGGAAAAGCCCGGATCAAGGTG
GAGTTTAGACCGCGAAAGAAGTACTGCGGTCCCTCGTTCCTAAAGCCCTT
CATGGCACAGTCGATGAAGCCATTGTATTTGGCATTCGCGCCCAGGGCAT
CGGCCTGCATGTGGGTCTTCACCACGTCGATGGGGTAGCACGCCAACCAG
GACGACATGCCAGCACATCCGCCGGCCATTAGAGTGTACGCAACGCCGGG
TGTCTCCACTTGACGCATAAGGTACTCGAAGGACACAAAGTAGCTGGCAA
AGCCTGGAATATCCCTTAGAATGGTGGCTGTTAATCCCTTGAAGGCACCT
CTGATACCCTCCGTTTTTACTATGTACTTGAGGCAGTGAATGGGTCCAGT
GAACTTGATGCCGCTATCAACCTGCGTGGACAATTGGAGTCGCGTTTTGG
CCAACTCCATGGGCGCACACACGAAACCCTGGGCGACACCAGCGATGGAG
CCAGCGAAGAAGTGTGACGTCAGCGAATTGGGGTCATTGGACAAGCGTTG
CACGTTTCCGTAGACCCCGAAAACGATGGCGTTCACCAATCCGATTCCTC
CCATGGGACTGCTGATACCACGATA
BS07212.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-PA | 1200 | CG4995-RA | 292..1200 | 925..17 | 4545 | 100 | Minus |
CG4995-PC | 1083 | CG4995-RC | 175..1083 | 925..17 | 4545 | 100 | Minus |
CG4995-PB | 1200 | CG4995-RB | 292..1200 | 925..17 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RD | 1246 | CG4995-RD | 313..1222 | 925..16 | 4550 | 100 | Minus |
CG4995-RB | 1431 | CG4995-RB | 498..1407 | 925..16 | 4550 | 100 | Minus |
CG4995-RC | 1205 | CG4995-RC | 272..1181 | 925..16 | 4550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10324375..10324966 | 607..16 | 2960 | 100 | Minus |
2L | 23513712 | 2L | 10323988..10324310 | 925..603 | 1615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:19:28 has no hits.
BS07212.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:48 Download gff for
BS07212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PC | 176..1083 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:18 Download gff for
BS07212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PB | 293..1200 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:54:07 Download gff for
BS07212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 273..1181 | 16..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:43:29 Download gff for
BS07212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 273..1181 | 16..924 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:43:29 Download gff for
BS07212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10323989..10324309 | 604..924 | 100 | -> | Minus |
2L | 10324379..10324966 | 16..603 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:07 Download gff for
BS07212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10323989..10324309 | 604..924 | 100 | -> | Minus |
arm_2L | 10324379..10324966 | 16..603 | 100 | | Minus |
BS07212.5prime Sequence
948 bp (867 high quality bases) assembled on 2006-01-06
> BS07212.5prime
GAAGTTATCAGTCGACATGTATCCAATAACGTTTATATATCGTGTCAACA
ATGATAAGGATCCCTACCGGAAGAGAGGTTCAGAGATCGGCGACATTCAA
CTAAAGGCCACCTCTGAAACTTTTTCTCCAAAAATGGTTGTGGATTTCGT
AGCCGGACTCCTGGGCGGAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCG
ATACCGTGAAGGTCCACCTGCAAACCGATGATCCTCGCAATCCCAAGTAC
AAAGGCACATTCCACTGCTTCCGGACGATAGTGCAAAGAGACAAATTCAT
AGGATTATATCGTGGTATCAGCAGTCCCATGGGAGGAATCGGATTGGTGA
ACGCCATCGTTTTCGGGGTCTACGGAAACGTGCAACGCTTGTCCAATGAC
CCCAATTCGCTGACGTCACACTTCTTCGCTGGCTCCATCGCTGGTGTCGC
CCAGGGTTTCGTGTGTGCGCCCATGGAGTTGGCCAAAACGCGACTCCAAT
TGTCCACGCAGGTTGATAGCGGCATCAAGTTCACTGGACCCATTCACTGC
CTCAAGTACATAGTAAAAACGGAGGGTATCAGAGGTGCCTTCAAGGGATT
AACAGCCACCATTCTAAGGGATATTCCAGGCTTTGCCAGCTACTTTGTGT
CCTTCGAGTACCTTATGCGTCAAGTGGAGACACCCGGCGTTGCGTACACT
CTAATGGCCGGCGGATGTGCTGGCATGTCGTCCTGGTTGGCGTGCTACCC
CATCGACGTGGTGAAGACCCACATGCAGGCCGATGCCCTGGGCGCGAATG
CCAAATACAATGGCTTCATCGACTGTGCCATGAAGGGCTTTAGGAACGAG
GGACCGCAGTACTTCTTTCGCGGTCTAAACTCCACCTTGATCCGGGCTTT
TTCCGATGAACGCCGCCTGCTTCTTTGTGGTGTCCTGGGTACTGGACA
BS07212.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-PA | 1200 | CG4995-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
CG4995-PB | 1200 | CG4995-RB | 1..885 | 17..901 | 4425 | 100 | Plus |
CG4995-PC | 1083 | CG4995-RC | 1..768 | 134..901 | 3840 | 100 | Plus |
CG4995-PA | 1200 | CG4995-RA | 882..931 | 899..948 | 250 | 100 | Plus |
CG4995-PB | 1200 | CG4995-RB | 882..931 | 899..948 | 250 | 100 | Plus |
CG4995-PC | 1083 | CG4995-RC | 765..814 | 899..948 | 250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RB | 1431 | CG4995-RB | 207..1137 | 17..948 | 4635 | 99.9 | Plus |
CG4995-RA | 1417 | CG4995-RA | 193..1123 | 17..948 | 4635 | 99.9 | Plus |
CG4995-RD | 1246 | CG4995-RD | 64..952 | 59..948 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10323847..10324310 | 167..630 | 2320 | 100 | Plus |
2L | 23513712 | 2L | 10324375..10324696 | 626..948 | 1565 | 99.7 | Plus |
2L | 23513712 | 2L | 10323669..10323780 | 57..168 | 560 | 100 | Plus |
2L | 23513712 | 2L | 10322793..10322835 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:26:49 has no hits.
BS07212.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:49 Download gff for
BS07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PB | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:19 Download gff for
BS07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PB | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:10 Download gff for
BS07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RA | 184..1122 | 7..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:52 Download gff for
BS07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RA | 184..1122 | 7..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:52 Download gff for
BS07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10322784..10322834 | 7..58 | 92 | -> | Plus |
2L | 10323671..10323779 | 59..167 | 100 | -> | Plus |
2L | 10323848..10324309 | 168..629 | 100 | -> | Plus |
2L | 10324379..10324695 | 630..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:10 Download gff for
BS07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10322784..10322834 | 7..58 | 92 | -> | Plus |
arm_2L | 10323671..10323779 | 59..167 | 100 | -> | Plus |
arm_2L | 10323848..10324309 | 168..629 | 100 | -> | Plus |
arm_2L | 10324379..10324695 | 630..947 | 99 | | Plus |
BS07212.complete Sequence
1232 bp (1232 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635769
> BS07212.complete
GAAGTTATCAGTCGACATGTATCCAATAACGTTTATATATCGTGTCAACA
ATGATAAGGATCCCTACCGGAAGAGAGGTTCAGAGATCGGCGACATTCAA
CTAAAGGCCACCTCTGAAACTTTTTCTCCAAAAATGGTTGTGGATTTCGT
AGCCGGACTCCTGGGCGGAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCG
ATACCGTGAAGGTCCACCTGCAAACCGATGATCCTCGCAATCCCAAGTAC
AAAGGCACATTCCACTGCTTCCGGACGATAGTGCAAAGAGACAAATTCAT
AGGATTATATCGTGGTATCAGCAGTCCCATGGGAGGAATCGGATTGGTGA
ACGCCATCGTTTTCGGGGTCTACGGAAACGTGCAACGCTTGTCCAATGAC
CCCAATTCGCTGACGTCACACTTCTTCGCTGGCTCCATCGCTGGTGTCGC
CCAGGGTTTCGTGTGTGCGCCCATGGAGTTGGCCAAAACGCGACTCCAAT
TGTCCACGCAGGTTGATAGCGGCATCAAGTTCACTGGACCCATTCACTGC
CTCAAGTACATAGTAAAAACGGAGGGTATCAGAGGTGCCTTCAAGGGATT
AACAGCCACCATTCTAAGGGATATTCCAGGCTTTGCCAGCTACTTTGTGT
CCTTCGAGTACCTTATGCGTCAAGTGGAGACACCCGGCGTTGCGTACACT
CTAATGGCCGGCGGATGTGCTGGCATGTCGTCCTGGTTGGCGTGCTACCC
CATCGACGTGGTGAAGACCCACATGCAGGCCGATGCCCTGGGCGCGAATG
CCAAATACAATGGCTTCATCGACTGTGCCATGAAGGGCTTTAGGAACGAG
GGACCGCAGTACTTCTTTCGCGGTCTAAACTCCACCTTGATCCGGGCTTT
TCCGATGAACGCCGCCTGCTTCTTTGTGGTGTCCTGGGTACTGGACATCT
GCAATGCCAAGGGCGGCATGGATTCCGTAATGCATTCCGATCAGCCACTG
ACTCTCGTCAACCTAGACAACAAGAGCCAAGCGGACTTGGAGGCGACGGC
GCCAACGGTTGAGGAAGTGGTGCGCAAAATAATCACGGACAATGCCATGT
CCCATCAGTATGTGTCCACGCCAAAGGATGTCGTTCACAGCCATTACACG
AGTAGCACAATCAACATTCCCAAAGAATCTAAAGCACGTTTAGCATCCGA
TTGTAATTTAAAATAAAAGCTTTCTAGACCAT
BS07212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RB | 1200 | CG4995-PB | 1..1200 | 17..1216 | 6000 | 100 | Plus |
CG4995-RA | 1200 | CG4995-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
CG4995-RD | 1083 | CG4995-PD | 1..1083 | 134..1216 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RB | 1431 | CG4995-RB | 207..1407 | 17..1217 | 6005 | 100 | Plus |
CG4995-RA | 1417 | CG4995-RA | 193..1393 | 17..1217 | 6005 | 100 | Plus |
CG4995-RD | 1246 | CG4995-RD | 64..1222 | 59..1217 | 5795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10324375..10324966 | 626..1217 | 2960 | 100 | Plus |
2L | 23513712 | 2L | 10323847..10324310 | 167..630 | 2320 | 100 | Plus |
2L | 23513712 | 2L | 10323669..10323780 | 57..168 | 560 | 100 | Plus |
2L | 23513712 | 2L | 10322793..10322835 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:51:41 has no hits.
BS07212.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:08 Download gff for
BS07212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RB | 1..1200 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:31 Download gff for
BS07212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RB | 198..1407 | 7..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:38 Download gff for
BS07212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RA | 193..1390 | 17..1214 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:08 Download gff for
BS07212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RB | 198..1407 | 7..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:10 Download gff for
BS07212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RA | 193..1390 | 17..1214 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:10 Download gff for
BS07212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10322793..10322834 | 17..58 | 100 | -> | Plus |
2L | 10323671..10323779 | 59..167 | 100 | -> | Plus |
2L | 10323848..10324309 | 168..629 | 100 | -> | Plus |
2L | 10324379..10324963 | 630..1214 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:38 Download gff for
BS07212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10323848..10324309 | 168..629 | 100 | -> | Plus |
arm_2L | 10322793..10322834 | 17..58 | 100 | -> | Plus |
arm_2L | 10323671..10323779 | 59..167 | 100 | -> | Plus |
arm_2L | 10324379..10324963 | 630..1214 | 100 | | Plus |
BS07212.pep Sequence
Translation from 16 to 1215
> BS07212.pep
MYPITFIYRVNNDKDPYRKRGSEIGDIQLKATSETFSPKMVVDFVAGLLG
GAAGVLVGHPFDTVKVHLQTDDPRNPKYKGTFHCFRTIVQRDKFIGLYRG
ISSPMGGIGLVNAIVFGVYGNVQRLSNDPNSLTSHFFAGSIAGVAQGFVC
APMELAKTRLQLSTQVDSGIKFTGPIHCLKYIVKTEGIRGAFKGLTATIL
RDIPGFASYFVSFEYLMRQVETPGVAYTLMAGGCAGMSSWLACYPIDVVK
THMQADALGANAKYNGFIDCAMKGFRNEGPQYFFRGLNSTLIRAFPMNAA
CFFVVSWVLDICNAKGGMDSVMHSDQPLTLVNLDNKSQADLEATAPTVEE
VVRKIITDNAMSHQYVSTPKDVVHSHYTSSTINIPKESKARLASDCNLK*
BS07212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-PB | 399 | CG4995-PB | 1..399 | 1..399 | 2095 | 100 | Plus |
CG4995-PA | 399 | CG4995-PA | 1..399 | 1..399 | 2095 | 100 | Plus |
CG4995-PD | 360 | CG4995-PD | 1..360 | 40..399 | 1889 | 100 | Plus |
CG4995-PC | 360 | CG4995-PC | 1..360 | 40..399 | 1889 | 100 | Plus |
CG3476-PA | 299 | CG3476-PA | 15..299 | 41..314 | 403 | 37.4 | Plus |