Clone Sequence Records
BS07217.3prime Sequence
798 bp (797 high quality bases) assembled on 2006-01-06
> BS07217.3prime
ATGGTCTAGAAAGCTTTTACTTGGCCTTGCCCTGGGCGGCCACAGCCTCG
ATGGCCTTCTTCACGGTCTCCTCGTCGCCGAGGAACTGCATGGACACCAC
CGGCTTGAAGTTCTCGTCCAGCTCGTAGACGAACGGAATGCCCGTGGGCA
GATTTAGGGCCATGATGGCGTCCTCAGAAAGGTTGTCTAAATGCTTGACG
ATGCCACGGAGGCTGTTGCCGTGGGCAGCGATCAGGATGCGCTTGCCCTC
CTTCATCTGGGGAATGATGACGTCGTTCCAGTAGGGCAGTGTGCGTTCGA
TGGTCAGCTTGAGGGACTCGAACTGGGGGAACTCCTCGGGCTTGGGACCC
TCGGCGTAGCGGGGATCCTTGACGATGTTCTCGTAGTACGGATGGCCCGG
CTCCATCGGTGGTGGCGGGGTGTCGAAGCTGCGACGCCAGATCTGCACCT
GGGCCTCGCCGTACTTGGCGGCGGTCTCGGCCTTGTTCAGGCCAGTGAGT
CCACCGTAGTGGCGCTCGTTCAGGCGCCAAGTCTTCTGGATGGGGATCTC
CTTGTGGCCACTGGCCTTCAGGATGCTGGCCAGCGTCACCTGGGCGCGGG
TCAGCACCGAGGTGTGGGCCACATCGAACTCCAGGCCGGCATCCTTGACG
GCCTTGCCGGCGGCTAGGGCCTCCTCCTGACCCTTTTCGCTGAGGTTGGC
GTCGTACCAGCCGCAGAACTGATTCTTCTGGTTCCACTCGGACTCGCCGT
GGCGCACCATCACGATCTTGTACTTGCCGCCCATGTCGACTGATAACT
BS07217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1721-PA | 768 | Pglym78-RA | 1..768 | 784..17 | 3840 | 100 | Minus |
CG1721-PB | 768 | Pglym78-RB | 1..768 | 784..17 | 3840 | 100 | Minus |
CG1721-PC | 768 | Pglym78-RC | 1..768 | 784..17 | 3840 | 100 | Minus |
CG17645-PA | 879 | Pglym87-RA | 265..297 | 631..599 | 165 | 100 | Minus |
CG17645-PA | 879 | Pglym87-RA | 553..629 | 343..267 | 160 | 88.3 | Minus |
CG17645-PA | 879 | Pglym87-RA | 367..426 | 529..470 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym78-RC | 1042 | CG1721-RC | 109..876 | 784..17 | 3840 | 100 | Minus |
Pglym78-RB | 1022 | CG1721-RB | 89..856 | 784..17 | 3840 | 100 | Minus |
Pglym78-RA | 1136 | CG1721-RA | 203..970 | 784..17 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29149008..29149506 | 682..184 | 2495 | 100 | Minus |
3R | 32079331 | 3R | 12231801..12232560 | 19..778 | 1220 | 77.4 | Plus |
3R | 32079331 | 3R | 29149569..29149735 | 183..17 | 835 | 100 | Minus |
3R | 32079331 | 3R | 29148450..29148554 | 784..680 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 14:16:09 has no hits.
BS07217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:56 Download gff for
BS07217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1721-PC | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:30 Download gff for
BS07217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1721-PC | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:01:32 Download gff for
BS07217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 195..972 | 13..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:33:20 Download gff for
BS07217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 195..972 | 13..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:33:20 Download gff for
BS07217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29148442..29148552 | 682..792 | 96 | -> | Minus |
3R | 29149009..29149506 | 184..681 | 100 | -> | Minus |
3R | 29149569..29149737 | 13..183 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:01:32 Download gff for
BS07217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24974164..24974274 | 682..792 | 96 | -> | Minus |
arm_3R | 24974731..24975228 | 184..681 | 100 | -> | Minus |
arm_3R | 24975291..24975459 | 13..183 | 98 | | Minus |
BS07217.5prime Sequence
798 bp (797 high quality bases) assembled on 2006-01-06
> BS07217.5prime
GAAGTTATCAGTCGACATGGGCGGCAAGTACAAGATCGTGATGGTGCGCC
ACGGCGAGTCCGAGTGGAACCAGAAGAATCAGTTCTGCGGCTGGTACGAC
GCCAACCTCAGCGAAAAGGGTCAGGAGGAGGCCCTAGCCGCCGGCAAGGC
CGTCAAGGATGCCGGCCTGGAGTTCGATGTGGCCCACACCTCGGTGCTGA
CCCGCGCCCAGGTGACGCTGGCCAGCATCCTGAAGGCCAGTGGCCACAAG
GAGATCCCCATCCAGAAGACTTGGCGCCTGAACGAGCGCCACTACGGTGG
ACTCACTGGCCTGAACAAGGCCGAGACCGCCGCCAAGTACGGCGAGGCCC
AGGTGCAGATCTGGCGTCGCAGCTTCGACACCCCGCCACCACCGATGGAG
CCGGGCCATCCGTACTACGAGAACATCGTCAAGGATCCCCGCTACGCCGA
GGGTCCCAAGCCCGAGGAGTTCCCCCAGTTCGAGTCCCTCAAGCTGACCA
TCGAACGCACACTGCCCTACTGGAACGACGTCATCATTCCCCAGATGAAG
GAGGGCAAGCGCATCCTGATCGCTGCCCACGGCAACAGCCTCCGTGGCAT
CGTCAAGCATTTAGACAACCTTTCTGAGGACGCCATCATGGCCCTAAATC
TGCCCACGGGCATTCCGTTCGTCTACGAGCTGGACGAGAACTTCAAGCCG
GTGGTGTCCATGCAGTTCCTCGGCGACGAGGAGACCGTGAAGAAGGCCAT
CGAGGCTGTGGCCGCCCAGGGCAAGGCCAAGTAAAAGCTTTCTAGACC
BS07217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1721-PA | 768 | Pglym78-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG1721-PB | 768 | Pglym78-RB | 1..768 | 17..784 | 3840 | 100 | Plus |
CG1721-PC | 768 | Pglym78-RC | 1..768 | 17..784 | 3840 | 100 | Plus |
CG17645-PA | 879 | Pglym87-RA | 265..297 | 170..202 | 165 | 100 | Plus |
CG17645-PA | 879 | Pglym87-RA | 553..629 | 458..534 | 160 | 88.3 | Plus |
CG17645-PA | 879 | Pglym87-RA | 367..426 | 272..331 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym78-RC | 1042 | CG1721-RC | 109..876 | 17..784 | 3840 | 100 | Plus |
Pglym78-RB | 1022 | CG1721-RB | 89..856 | 17..784 | 3840 | 100 | Plus |
Pglym78-RA | 1136 | CG1721-RA | 203..970 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29149008..29149506 | 119..617 | 2495 | 100 | Plus |
3R | 32079331 | 3R | 12231801..12232560 | 782..23 | 1220 | 77.4 | Minus |
3R | 32079331 | 3R | 29149569..29149735 | 618..784 | 835 | 100 | Plus |
3R | 32079331 | 3R | 29148450..29148554 | 17..121 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:43:59 has no hits.
BS07217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:57 Download gff for
BS07217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1721-PC | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:31 Download gff for
BS07217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1721-PC | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:32:24 Download gff for
BS07217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 195..972 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:34 Download gff for
BS07217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 195..972 | 9..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:34 Download gff for
BS07217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29148442..29148552 | 9..119 | 96 | -> | Plus |
3R | 29149009..29149506 | 120..617 | 100 | -> | Plus |
3R | 29149569..29149737 | 618..788 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:32:24 Download gff for
BS07217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24974164..24974274 | 9..119 | 96 | -> | Plus |
arm_3R | 24974731..24975228 | 120..617 | 100 | -> | Plus |
arm_3R | 24975291..24975459 | 618..788 | 98 | | Plus |
BS07217.complete Sequence
800 bp (800 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635771
> BS07217.complete
GAAGTTATCAGTCGACATGGGCGGCAAGTACAAGATCGTGATGGTGCGCC
ACGGCGAGTCCGAGTGGAACCAGAAGAATCAGTTCTGCGGCTGGTACGAC
GCCAACCTCAGCGAAAAGGGTCAGGAGGAGGCCCTAGCCGCCGGCAAGGC
CGTCAAGGATGCCGGCCTGGAGTTCGATGTGGCCCACACCTCGGTGCTGA
CCCGCGCCCAGGTGACGCTGGCCAGCATCCTGAAGGCCAGTGGCCACAAG
GAGATCCCCATCCAGAAGACTTGGCGCCTGAACGAGCGCCACTACGGTGG
ACTCACTGGCCTGAACAAGGCCGAGACCGCCGCCAAGTACGGCGAGGCCC
AGGTGCAGATCTGGCGTCGCAGCTTCGACACCCCGCCACCACCGATGGAG
CCGGGCCATCCGTACTACGAGAACATCGTCAAGGATCCCCGCTACGCCGA
GGGTCCCAAGCCCGAGGAGTTCCCCCAGTTCGAGTCCCTCAAGCTGACCA
TCGAACGCACACTGCCCTACTGGAACGACGTCATCATTCCCCAGATGAAG
GAGGGCAAGCGCATCCTGATCGCTGCCCACGGCAACAGCCTCCGTGGCAT
CGTCAAGCATTTAGACAACCTTTCTGAGGACGCCATCATGGCCCTAAATC
TGCCCACGGGCATTCCGTTCGTCTACGAGCTGGACGAGAACTTCAAGCCG
GTGGTGTCCATGCAGTTCCTCGGCGACGAGGAGACCGTGAAGAAGGCCAT
CGAGGCTGTGGCCGCCCAGGGCAAGGCCAAGTAAAAGCTTTCTAGACCAT
BS07217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym78-RC | 768 | CG1721-PC | 1..768 | 17..784 | 3840 | 100 | Plus |
Pglym78-RB | 768 | CG1721-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
Pglym78-RA | 768 | CG1721-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym78-RC | 1042 | CG1721-RC | 109..876 | 17..784 | 3840 | 100 | Plus |
Pglym78-RB | 1022 | CG1721-RB | 89..856 | 17..784 | 3840 | 100 | Plus |
Pglym78-RA | 1136 | CG1721-RA | 203..970 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29149008..29149506 | 119..617 | 2495 | 100 | Plus |
3R | 32079331 | 3R | 12231801..12232560 | 782..23 | 1220 | 77.4 | Minus |
3R | 32079331 | 3R | 29149569..29149735 | 618..784 | 835 | 100 | Plus |
3R | 32079331 | 3R | 29148450..29148554 | 17..121 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:04:51 has no hits.
BS07217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:11 Download gff for
BS07217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RC | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:35 Download gff for
BS07217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RC | 62..839 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:13:40 Download gff for
BS07217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 203..968 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:11 Download gff for
BS07217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RC | 62..839 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:19 Download gff for
BS07217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 203..968 | 17..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:19 Download gff for
BS07217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29149569..29149733 | 618..782 | 100 | | Plus |
3R | 29148450..29148552 | 17..119 | 100 | -> | Plus |
3R | 29149009..29149506 | 120..617 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:13:40 Download gff for
BS07217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24974172..24974274 | 17..119 | 100 | -> | Plus |
arm_3R | 24974731..24975228 | 120..617 | 100 | -> | Plus |
arm_3R | 24975291..24975455 | 618..782 | 100 | | Plus |
BS07217.pep Sequence
Translation from 16 to 783
> BS07217.pep
MGGKYKIVMVRHGESEWNQKNQFCGWYDANLSEKGQEEALAAGKAVKDAG
LEFDVAHTSVLTRAQVTLASILKASGHKEIPIQKTWRLNERHYGGLTGLN
KAETAAKYGEAQVQIWRRSFDTPPPPMEPGHPYYENIVKDPRYAEGPKPE
EFPQFESLKLTIERTLPYWNDVIIPQMKEGKRILIAAHGNSLRGIVKHLD
NLSEDAIMALNLPTGIPFVYELDENFKPVVSMQFLGDEETVKKAIEAVAA
QGKAK*
BS07217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym78-PC | 255 | CG1721-PC | 1..255 | 1..255 | 1345 | 100 | Plus |
Pglym78-PB | 255 | CG1721-PB | 1..255 | 1..255 | 1345 | 100 | Plus |
Pglym78-PA | 255 | CG1721-PA | 1..255 | 1..255 | 1345 | 100 | Plus |
Pglym87-PA | 292 | CG17645-PA | 40..292 | 3..255 | 1042 | 75.9 | Plus |
CG7059-PC | 253 | CG7059-PC | 6..252 | 6..252 | 501 | 41.4 | Plus |