Clone BS07217 Report

Search the DGRC for BS07217

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptPglym78-RA
Protein status:BS07217.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07217.3prime Sequence

798 bp (797 high quality bases) assembled on 2006-01-06

> BS07217.3prime
ATGGTCTAGAAAGCTTTTACTTGGCCTTGCCCTGGGCGGCCACAGCCTCG
ATGGCCTTCTTCACGGTCTCCTCGTCGCCGAGGAACTGCATGGACACCAC
CGGCTTGAAGTTCTCGTCCAGCTCGTAGACGAACGGAATGCCCGTGGGCA
GATTTAGGGCCATGATGGCGTCCTCAGAAAGGTTGTCTAAATGCTTGACG
ATGCCACGGAGGCTGTTGCCGTGGGCAGCGATCAGGATGCGCTTGCCCTC
CTTCATCTGGGGAATGATGACGTCGTTCCAGTAGGGCAGTGTGCGTTCGA
TGGTCAGCTTGAGGGACTCGAACTGGGGGAACTCCTCGGGCTTGGGACCC
TCGGCGTAGCGGGGATCCTTGACGATGTTCTCGTAGTACGGATGGCCCGG
CTCCATCGGTGGTGGCGGGGTGTCGAAGCTGCGACGCCAGATCTGCACCT
GGGCCTCGCCGTACTTGGCGGCGGTCTCGGCCTTGTTCAGGCCAGTGAGT
CCACCGTAGTGGCGCTCGTTCAGGCGCCAAGTCTTCTGGATGGGGATCTC
CTTGTGGCCACTGGCCTTCAGGATGCTGGCCAGCGTCACCTGGGCGCGGG
TCAGCACCGAGGTGTGGGCCACATCGAACTCCAGGCCGGCATCCTTGACG
GCCTTGCCGGCGGCTAGGGCCTCCTCCTGACCCTTTTCGCTGAGGTTGGC
GTCGTACCAGCCGCAGAACTGATTCTTCTGGTTCCACTCGGACTCGCCGT
GGCGCACCATCACGATCTTGTACTTGCCGCCCATGTCGACTGATAACT

BS07217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1721-PA 768 Pglym78-RA 1..768 784..17 3840 100 Minus
CG1721-PB 768 Pglym78-RB 1..768 784..17 3840 100 Minus
CG1721-PC 768 Pglym78-RC 1..768 784..17 3840 100 Minus
CG17645-PA 879 Pglym87-RA 265..297 631..599 165 100 Minus
CG17645-PA 879 Pglym87-RA 553..629 343..267 160 88.3 Minus
CG17645-PA 879 Pglym87-RA 367..426 529..470 150 90 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym78-RC 1042 CG1721-RC 109..876 784..17 3840 100 Minus
Pglym78-RB 1022 CG1721-RB 89..856 784..17 3840 100 Minus
Pglym78-RA 1136 CG1721-RA 203..970 784..17 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29149008..29149506 682..184 2495 100 Minus
3R 32079331 3R 12231801..12232560 19..778 1220 77.4 Plus
3R 32079331 3R 29149569..29149735 183..17 835 100 Minus
3R 32079331 3R 29148450..29148554 784..680 525 100 Minus
Blast to na_te.dros performed on 2015-01-30 14:16:09 has no hits.

BS07217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:56 Download gff for BS07217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1721-PC 1..768 17..784 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:30 Download gff for BS07217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1721-PC 1..768 17..784 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:01:32 Download gff for BS07217.3prime
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 195..972 13..792 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:33:20 Download gff for BS07217.3prime
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 195..972 13..792 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:33:20 Download gff for BS07217.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29148442..29148552 682..792 96 -> Minus
3R 29149009..29149506 184..681 100 -> Minus
3R 29149569..29149737 13..183 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:01:32 Download gff for BS07217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24974164..24974274 682..792 96 -> Minus
arm_3R 24974731..24975228 184..681 100 -> Minus
arm_3R 24975291..24975459 13..183 98   Minus

BS07217.5prime Sequence

798 bp (797 high quality bases) assembled on 2006-01-06

> BS07217.5prime
GAAGTTATCAGTCGACATGGGCGGCAAGTACAAGATCGTGATGGTGCGCC
ACGGCGAGTCCGAGTGGAACCAGAAGAATCAGTTCTGCGGCTGGTACGAC
GCCAACCTCAGCGAAAAGGGTCAGGAGGAGGCCCTAGCCGCCGGCAAGGC
CGTCAAGGATGCCGGCCTGGAGTTCGATGTGGCCCACACCTCGGTGCTGA
CCCGCGCCCAGGTGACGCTGGCCAGCATCCTGAAGGCCAGTGGCCACAAG
GAGATCCCCATCCAGAAGACTTGGCGCCTGAACGAGCGCCACTACGGTGG
ACTCACTGGCCTGAACAAGGCCGAGACCGCCGCCAAGTACGGCGAGGCCC
AGGTGCAGATCTGGCGTCGCAGCTTCGACACCCCGCCACCACCGATGGAG
CCGGGCCATCCGTACTACGAGAACATCGTCAAGGATCCCCGCTACGCCGA
GGGTCCCAAGCCCGAGGAGTTCCCCCAGTTCGAGTCCCTCAAGCTGACCA
TCGAACGCACACTGCCCTACTGGAACGACGTCATCATTCCCCAGATGAAG
GAGGGCAAGCGCATCCTGATCGCTGCCCACGGCAACAGCCTCCGTGGCAT
CGTCAAGCATTTAGACAACCTTTCTGAGGACGCCATCATGGCCCTAAATC
TGCCCACGGGCATTCCGTTCGTCTACGAGCTGGACGAGAACTTCAAGCCG
GTGGTGTCCATGCAGTTCCTCGGCGACGAGGAGACCGTGAAGAAGGCCAT
CGAGGCTGTGGCCGCCCAGGGCAAGGCCAAGTAAAAGCTTTCTAGACC

BS07217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1721-PA 768 Pglym78-RA 1..768 17..784 3840 100 Plus
CG1721-PB 768 Pglym78-RB 1..768 17..784 3840 100 Plus
CG1721-PC 768 Pglym78-RC 1..768 17..784 3840 100 Plus
CG17645-PA 879 Pglym87-RA 265..297 170..202 165 100 Plus
CG17645-PA 879 Pglym87-RA 553..629 458..534 160 88.3 Plus
CG17645-PA 879 Pglym87-RA 367..426 272..331 150 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym78-RC 1042 CG1721-RC 109..876 17..784 3840 100 Plus
Pglym78-RB 1022 CG1721-RB 89..856 17..784 3840 100 Plus
Pglym78-RA 1136 CG1721-RA 203..970 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29149008..29149506 119..617 2495 100 Plus
3R 32079331 3R 12231801..12232560 782..23 1220 77.4 Minus
3R 32079331 3R 29149569..29149735 618..784 835 100 Plus
3R 32079331 3R 29148450..29148554 17..121 525 100 Plus
Blast to na_te.dros performed on 2015-02-02 10:43:59 has no hits.

BS07217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:57 Download gff for BS07217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1721-PC 1..768 17..784 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:31 Download gff for BS07217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1721-PC 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:32:24 Download gff for BS07217.5prime
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 195..972 9..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:34 Download gff for BS07217.5prime
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 195..972 9..788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:34 Download gff for BS07217.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29148442..29148552 9..119 96 -> Plus
3R 29149009..29149506 120..617 100 -> Plus
3R 29149569..29149737 618..788 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:32:24 Download gff for BS07217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24974164..24974274 9..119 96 -> Plus
arm_3R 24974731..24975228 120..617 100 -> Plus
arm_3R 24975291..24975459 618..788 98   Plus

BS07217.complete Sequence

800 bp (800 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635771

> BS07217.complete
GAAGTTATCAGTCGACATGGGCGGCAAGTACAAGATCGTGATGGTGCGCC
ACGGCGAGTCCGAGTGGAACCAGAAGAATCAGTTCTGCGGCTGGTACGAC
GCCAACCTCAGCGAAAAGGGTCAGGAGGAGGCCCTAGCCGCCGGCAAGGC
CGTCAAGGATGCCGGCCTGGAGTTCGATGTGGCCCACACCTCGGTGCTGA
CCCGCGCCCAGGTGACGCTGGCCAGCATCCTGAAGGCCAGTGGCCACAAG
GAGATCCCCATCCAGAAGACTTGGCGCCTGAACGAGCGCCACTACGGTGG
ACTCACTGGCCTGAACAAGGCCGAGACCGCCGCCAAGTACGGCGAGGCCC
AGGTGCAGATCTGGCGTCGCAGCTTCGACACCCCGCCACCACCGATGGAG
CCGGGCCATCCGTACTACGAGAACATCGTCAAGGATCCCCGCTACGCCGA
GGGTCCCAAGCCCGAGGAGTTCCCCCAGTTCGAGTCCCTCAAGCTGACCA
TCGAACGCACACTGCCCTACTGGAACGACGTCATCATTCCCCAGATGAAG
GAGGGCAAGCGCATCCTGATCGCTGCCCACGGCAACAGCCTCCGTGGCAT
CGTCAAGCATTTAGACAACCTTTCTGAGGACGCCATCATGGCCCTAAATC
TGCCCACGGGCATTCCGTTCGTCTACGAGCTGGACGAGAACTTCAAGCCG
GTGGTGTCCATGCAGTTCCTCGGCGACGAGGAGACCGTGAAGAAGGCCAT
CGAGGCTGTGGCCGCCCAGGGCAAGGCCAAGTAAAAGCTTTCTAGACCAT

BS07217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym78-RC 768 CG1721-PC 1..768 17..784 3840 100 Plus
Pglym78-RB 768 CG1721-PB 1..768 17..784 3840 100 Plus
Pglym78-RA 768 CG1721-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym78-RC 1042 CG1721-RC 109..876 17..784 3840 100 Plus
Pglym78-RB 1022 CG1721-RB 89..856 17..784 3840 100 Plus
Pglym78-RA 1136 CG1721-RA 203..970 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29149008..29149506 119..617 2495 100 Plus
3R 32079331 3R 12231801..12232560 782..23 1220 77.4 Minus
3R 32079331 3R 29149569..29149735 618..784 835 100 Plus
3R 32079331 3R 29148450..29148554 17..121 525 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:04:51 has no hits.

BS07217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:11 Download gff for BS07217.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RC 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:35 Download gff for BS07217.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RC 62..839 9..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:13:40 Download gff for BS07217.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 203..968 17..782 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:11 Download gff for BS07217.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RC 62..839 9..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:19 Download gff for BS07217.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 203..968 17..782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:19 Download gff for BS07217.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29149569..29149733 618..782 100   Plus
3R 29148450..29148552 17..119 100 -> Plus
3R 29149009..29149506 120..617 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:13:40 Download gff for BS07217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24974172..24974274 17..119 100 -> Plus
arm_3R 24974731..24975228 120..617 100 -> Plus
arm_3R 24975291..24975455 618..782 100   Plus

BS07217.pep Sequence

Translation from 16 to 783

> BS07217.pep
MGGKYKIVMVRHGESEWNQKNQFCGWYDANLSEKGQEEALAAGKAVKDAG
LEFDVAHTSVLTRAQVTLASILKASGHKEIPIQKTWRLNERHYGGLTGLN
KAETAAKYGEAQVQIWRRSFDTPPPPMEPGHPYYENIVKDPRYAEGPKPE
EFPQFESLKLTIERTLPYWNDVIIPQMKEGKRILIAAHGNSLRGIVKHLD
NLSEDAIMALNLPTGIPFVYELDENFKPVVSMQFLGDEETVKKAIEAVAA
QGKAK*

BS07217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym78-PC 255 CG1721-PC 1..255 1..255 1345 100 Plus
Pglym78-PB 255 CG1721-PB 1..255 1..255 1345 100 Plus
Pglym78-PA 255 CG1721-PA 1..255 1..255 1345 100 Plus
Pglym87-PA 292 CG17645-PA 40..292 3..255 1042 75.9 Plus
CG7059-PC 253 CG7059-PC 6..252 6..252 501 41.4 Plus