Clone Sequence Records
BS07219.3prime Sequence
882 bp (792 high quality bases) assembled on 2006-01-06
> BS07219.3prime
ATGGTCTAGAAAGCTTTCAGTAGGCCGGCGAGTTGAAGGCACCGTTGTAT
CCGCCCCCATATCCACTGCCATAGCCAAAGGCATTGTGATTGTTCAGCAC
TCCAAATGGTCCCTTGTGGACGCCATCCTCCTTGTACTCGGTGTTCATCG
AGAAATGATGGTCCCAATGGCTCGGATCAGCGGGATTGTGAGCCGGATAG
CGATGATAGTTCATGCCGCTGGTGGCAGGAGCCTGACCAGCTGCTCCGGG
CACTCCTGCCACTCCAGGTGCTCCCGGAACTCCAGCTACTCCAGGAACTC
CTGGTTGAGCCACAGCTCCGGGTAGCACTCCATAGGCGGGGAACTGGGCT
GGTTGAGGGTACGCTGGGTACTGTGGCAAGTATACTCCGGGGTAGGGATA
GCCAGGATAGGCACCAGTTCCCGGGAAGTAACCAGGTGCTCCTGCACCCA
CTGGCTGCTGGGGAGGAACTCCCACCGGATACTGAGCAGGAACTGCTCCA
GCAACAGGATAGCCAGGAGGAGAAACAGCACCTGCACTTTGGTAACCACC
GGATGATGAGGATCCTCCTGAAGAGCCTCCTGCAGCTGGGTACGGAACTG
GAGCCTGTTGTCCAGGAAAACCCGGAGGCGGATAAGCGGGAATCTGGTGA
CCTCCTGTAATTGTGAGTGCCGGATTTGGTGACTGGTTGCCAGGAAAAAC
AACGGAGTTCGTACTGGCCACTCGTACGCCAGAGCCACCCTGCTCATGGC
CATGGGCATCGTCGATGGATCCAGTTGCGCCCGCATAACCCGATCCCAGC
TGACCAAGGCCAGGATAAAGTTGCGAATTGAGATTGGCCCGCTGGCGATG
GCGACTGCTGGTAATGCCTCCCGTCAAAGTGG
BS07219.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7021-PA | 990 | Ela-RA | 125..990 | 882..17 | 4305 | 99.8 | Minus |
CG7021-PB | 930 | Ela-RB | 293..930 | 654..17 | 3190 | 100 | Minus |
CG7021-PB | 930 | Ela-RB | 125..293 | 882..714 | 820 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ela-RC | 2135 | CG7021-RC | 145..1011 | 882..16 | 4320 | 99.9 | Minus |
Ela-RA | 1187 | CG7021-RA | 145..1011 | 882..16 | 4320 | 99.9 | Minus |
Ela-RB | 1127 | CG7021-RB | 313..951 | 654..16 | 3195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24866010..24866527 | 533..16 | 2590 | 100 | Minus |
3R | 32079331 | 3R | 24865494..24865846 | 882..530 | 1750 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:22:52 has no hits.
BS07219.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:00 Download gff for
BS07219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-PA | 125..990 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:35 Download gff for
BS07219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7021-PA | 125..990 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:25 Download gff for
BS07219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 145..1021 | 4..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:33 Download gff for
BS07219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 145..1021 | 4..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:33 Download gff for
BS07219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24865494..24865844 | 532..882 | 99 | -> | Minus |
3R | 24866012..24866537 | 4..531 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:25 Download gff for
BS07219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20691216..20691566 | 532..882 | 99 | -> | Minus |
arm_3R | 20691734..20692259 | 4..531 | 99 | | Minus |
BS07219.5prime Sequence
939 bp (844 high quality bases) assembled on 2006-01-06
> BS07219.5prime
GAAGTTATCAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTC
TGGCCCTCATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGAC
GAAAGTCAGGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGAC
GGGAGGCATTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGC
AACTTTATCCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACT
GGATCCATCGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACG
AGTGGCCAGTACGAACTCCGTTGTTTTTCCTGGCAACCAGTCACCAAATC
CGGCACTCACAATTACAGGAGGTCACCAGATTCCCGCTTATCCGCCTCCG
GGTTTTCCTGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTC
TTCAGGAGGATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTT
CTCCTCCTGGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTG
GGAGTTCCTCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCC
GGGAACTGGTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCAC
AGTACCCAGCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTA
CCCGGAGCTGTGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGG
AGCACCTGGAGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCA
CCAGCGGCATGAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCG
AGCCATTGGGACCATCATTTCTCGATGAACACCGAGTACAAGGAGGATGG
CGTCCACAAGGGACATTTGGAGTGCTGAACAATCACAAT
BS07219.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7021-PA | 990 | Ela-RA | 1..898 | 17..914 | 4490 | 100 | Plus |
CG7021-PB | 930 | Ela-RB | 293..838 | 369..914 | 2730 | 100 | Plus |
CG7021-PB | 930 | Ela-RB | 1..293 | 17..309 | 1465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ela-RC | 2135 | CG7021-RC | 20..944 | 16..939 | 4600 | 99.9 | Plus |
Ela-RA | 1187 | CG7021-RA | 20..944 | 16..939 | 4600 | 99.9 | Plus |
Ela-RB | 1127 | CG7021-RB | 313..884 | 369..939 | 2835 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24865369..24865846 | 16..493 | 2390 | 100 | Plus |
3R | 32079331 | 3R | 24866010..24866460 | 490..939 | 2205 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:30:07 has no hits.
BS07219.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:01 Download gff for
BS07219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-PA | 1..924 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:37 Download gff for
BS07219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7021-PA | 1..924 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:29 Download gff for
BS07219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 14..944 | 10..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:27 Download gff for
BS07219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 14..944 | 10..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:27 Download gff for
BS07219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24865363..24865844 | 10..491 | 99 | -> | Plus |
3R | 24866012..24866460 | 492..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:29 Download gff for
BS07219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20691085..20691566 | 10..491 | 99 | -> | Plus |
arm_3R | 20691734..20692182 | 492..939 | 99 | | Plus |
BS07219.complete Sequence
1022 bp (1022 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635772
> BS07219.complete
GAAGTTATCAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTC
TGGCCCTCATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGAC
GAAAGTCAGGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGAC
GGGAGGCATTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGC
AACTTTATCCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACT
GGATCCATCGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACG
AGTGGCCAGTACGAACTCCGTTGTTTTTCCTGGCAACCAGTCACCAAATC
CGGCACTCACAATTACAGGAGGTCACCAGATTCCCGCTTATCCGCCTCCG
GGTTTTCCTGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTC
TTCAGGAGGATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTT
CTCCTCCTGGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTG
GGAGTTCCTCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCC
GGGAACTGGTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCAC
AGTACCCAGCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTA
CCCGGAGCTGTGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGG
AGCACCTGGAGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCA
CCAGCGGCATGAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCG
AGCCATTGGGACCATCATTTCTCGATGAACACCGAGTACAAGGAGGATGG
CGTCCACAAGGGACCATTTGGAGTGCTGAACAATCACAATGCCTTTGGCT
ATGGCAGTGGATATGGGGGCGGATACAACGGTGCCTTCAACTCGCCGGCC
TACTGAAAGCTTTCTAGACCAT
BS07219.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ela-RC | 990 | CG7021-PC | 1..990 | 17..1006 | 4950 | 100 | Plus |
Ela-RA | 990 | CG7021-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Ela-RB | 930 | CG7021-PB | 293..930 | 369..1006 | 3190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ela-RC | 2135 | CG7021-RC | 20..1011 | 16..1007 | 4960 | 100 | Plus |
Ela-RA | 1187 | CG7021-RA | 20..1011 | 16..1007 | 4960 | 100 | Plus |
Ela-RB | 1127 | CG7021-RB | 313..951 | 369..1007 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24866010..24866527 | 490..1007 | 2590 | 100 | Plus |
3R | 32079331 | 3R | 24865369..24865846 | 16..493 | 2390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:46:39 has no hits.
BS07219.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:13 Download gff for
BS07219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 1..990 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:36 Download gff for
BS07219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 13..1020 | 10..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:15 Download gff for
BS07219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 26..1009 | 22..1005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:13 Download gff for
BS07219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 13..1020 | 10..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:26 Download gff for
BS07219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 26..1009 | 22..1005 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:26 Download gff for
BS07219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24865375..24865844 | 22..491 | 100 | -> | Plus |
3R | 24866012..24866525 | 492..1005 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:15 Download gff for
BS07219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20691097..20691566 | 22..491 | 100 | -> | Plus |
arm_3R | 20691734..20692247 | 492..1005 | 100 | | Plus |
BS07219.pep Sequence
Translation from 16 to 1005
> BS07219.pep
MLSRRVIAFAALALIQIASGQASQFSRDESQEDQKTEFNLASTLTGGITS
SRHRQRANLNSQLYPGLGQLGSGYAGATGSIDDAHGHEQGGSGVRVASTN
SVVFPGNQSPNPALTITGGHQIPAYPPPGFPGQQAPVPYPAAGGSSGGSS
SSGGYQSAGAVSPPGYPVAGAVPAQYPVGVPPQQPVGAGAPGYFPGTGAY
PGYPYPGVYLPQYPAYPQPAQFPAYGVLPGAVAQPGVPGVAGVPGAPGVA
GVPGAAGQAPATSGMNYHRYPAHNPADPSHWDHHFSMNTEYKEDGVHKGP
FGVLNNHNAFGYGSGYGGGYNGAFNSPAY*
BS07219.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ela-PC | 329 | CG7021-PC | 1..329 | 1..329 | 1788 | 100 | Plus |
Ela-PA | 329 | CG7021-PA | 1..329 | 1..329 | 1788 | 100 | Plus |
Ela-PB | 309 | CG7021-PB | 1..309 | 1..329 | 1647 | 93.6 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 336..548 | 65..270 | 160 | 33.5 | Plus |
Sec24CD-PA | 1193 | CG10882-PA | 150..360 | 79..278 | 158 | 31.4 | Plus |