Clone BS07219 Report

Search the DGRC for BS07219

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptEla-RA
Protein status:BS07219.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07219.3prime Sequence

882 bp (792 high quality bases) assembled on 2006-01-06

> BS07219.3prime
ATGGTCTAGAAAGCTTTCAGTAGGCCGGCGAGTTGAAGGCACCGTTGTAT
CCGCCCCCATATCCACTGCCATAGCCAAAGGCATTGTGATTGTTCAGCAC
TCCAAATGGTCCCTTGTGGACGCCATCCTCCTTGTACTCGGTGTTCATCG
AGAAATGATGGTCCCAATGGCTCGGATCAGCGGGATTGTGAGCCGGATAG
CGATGATAGTTCATGCCGCTGGTGGCAGGAGCCTGACCAGCTGCTCCGGG
CACTCCTGCCACTCCAGGTGCTCCCGGAACTCCAGCTACTCCAGGAACTC
CTGGTTGAGCCACAGCTCCGGGTAGCACTCCATAGGCGGGGAACTGGGCT
GGTTGAGGGTACGCTGGGTACTGTGGCAAGTATACTCCGGGGTAGGGATA
GCCAGGATAGGCACCAGTTCCCGGGAAGTAACCAGGTGCTCCTGCACCCA
CTGGCTGCTGGGGAGGAACTCCCACCGGATACTGAGCAGGAACTGCTCCA
GCAACAGGATAGCCAGGAGGAGAAACAGCACCTGCACTTTGGTAACCACC
GGATGATGAGGATCCTCCTGAAGAGCCTCCTGCAGCTGGGTACGGAACTG
GAGCCTGTTGTCCAGGAAAACCCGGAGGCGGATAAGCGGGAATCTGGTGA
CCTCCTGTAATTGTGAGTGCCGGATTTGGTGACTGGTTGCCAGGAAAAAC
AACGGAGTTCGTACTGGCCACTCGTACGCCAGAGCCACCCTGCTCATGGC
CATGGGCATCGTCGATGGATCCAGTTGCGCCCGCATAACCCGATCCCAGC
TGACCAAGGCCAGGATAAAGTTGCGAATTGAGATTGGCCCGCTGGCGATG
GCGACTGCTGGTAATGCCTCCCGTCAAAGTGG

BS07219.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7021-PA 990 Ela-RA 125..990 882..17 4305 99.8 Minus
CG7021-PB 930 Ela-RB 293..930 654..17 3190 100 Minus
CG7021-PB 930 Ela-RB 125..293 882..714 820 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ela-RC 2135 CG7021-RC 145..1011 882..16 4320 99.9 Minus
Ela-RA 1187 CG7021-RA 145..1011 882..16 4320 99.9 Minus
Ela-RB 1127 CG7021-RB 313..951 654..16 3195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24866010..24866527 533..16 2590 100 Minus
3R 32079331 3R 24865494..24865846 882..530 1750 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 21:22:52 has no hits.

BS07219.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:00 Download gff for BS07219.3prime
Subject Subject Range Query Range Percent Splice Strand
Ela-PA 125..990 17..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:35 Download gff for BS07219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7021-PA 125..990 17..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:25 Download gff for BS07219.3prime
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 145..1021 4..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:33 Download gff for BS07219.3prime
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 145..1021 4..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:33 Download gff for BS07219.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24865494..24865844 532..882 99 -> Minus
3R 24866012..24866537 4..531 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:25 Download gff for BS07219.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20691216..20691566 532..882 99 -> Minus
arm_3R 20691734..20692259 4..531 99   Minus

BS07219.5prime Sequence

939 bp (844 high quality bases) assembled on 2006-01-06

> BS07219.5prime
GAAGTTATCAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTC
TGGCCCTCATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGAC
GAAAGTCAGGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGAC
GGGAGGCATTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGC
AACTTTATCCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACT
GGATCCATCGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACG
AGTGGCCAGTACGAACTCCGTTGTTTTTCCTGGCAACCAGTCACCAAATC
CGGCACTCACAATTACAGGAGGTCACCAGATTCCCGCTTATCCGCCTCCG
GGTTTTCCTGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTC
TTCAGGAGGATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTT
CTCCTCCTGGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTG
GGAGTTCCTCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCC
GGGAACTGGTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCAC
AGTACCCAGCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTA
CCCGGAGCTGTGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGG
AGCACCTGGAGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCA
CCAGCGGCATGAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCG
AGCCATTGGGACCATCATTTCTCGATGAACACCGAGTACAAGGAGGATGG
CGTCCACAAGGGACATTTGGAGTGCTGAACAATCACAAT

BS07219.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7021-PA 990 Ela-RA 1..898 17..914 4490 100 Plus
CG7021-PB 930 Ela-RB 293..838 369..914 2730 100 Plus
CG7021-PB 930 Ela-RB 1..293 17..309 1465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ela-RC 2135 CG7021-RC 20..944 16..939 4600 99.9 Plus
Ela-RA 1187 CG7021-RA 20..944 16..939 4600 99.9 Plus
Ela-RB 1127 CG7021-RB 313..884 369..939 2835 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24865369..24865846 16..493 2390 100 Plus
3R 32079331 3R 24866010..24866460 490..939 2205 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 06:30:07 has no hits.

BS07219.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:01 Download gff for BS07219.5prime
Subject Subject Range Query Range Percent Splice Strand
Ela-PA 1..924 17..939 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:37 Download gff for BS07219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7021-PA 1..924 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:29 Download gff for BS07219.5prime
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 14..944 10..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:27 Download gff for BS07219.5prime
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 14..944 10..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:27 Download gff for BS07219.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24865363..24865844 10..491 99 -> Plus
3R 24866012..24866460 492..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:29 Download gff for BS07219.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20691085..20691566 10..491 99 -> Plus
arm_3R 20691734..20692182 492..939 99   Plus

BS07219.complete Sequence

1022 bp (1022 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635772

> BS07219.complete
GAAGTTATCAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTC
TGGCCCTCATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGAC
GAAAGTCAGGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGAC
GGGAGGCATTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGC
AACTTTATCCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACT
GGATCCATCGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACG
AGTGGCCAGTACGAACTCCGTTGTTTTTCCTGGCAACCAGTCACCAAATC
CGGCACTCACAATTACAGGAGGTCACCAGATTCCCGCTTATCCGCCTCCG
GGTTTTCCTGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTC
TTCAGGAGGATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTT
CTCCTCCTGGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTG
GGAGTTCCTCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCC
GGGAACTGGTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCAC
AGTACCCAGCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTA
CCCGGAGCTGTGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGG
AGCACCTGGAGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCA
CCAGCGGCATGAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCG
AGCCATTGGGACCATCATTTCTCGATGAACACCGAGTACAAGGAGGATGG
CGTCCACAAGGGACCATTTGGAGTGCTGAACAATCACAATGCCTTTGGCT
ATGGCAGTGGATATGGGGGCGGATACAACGGTGCCTTCAACTCGCCGGCC
TACTGAAAGCTTTCTAGACCAT

BS07219.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ela-RC 990 CG7021-PC 1..990 17..1006 4950 100 Plus
Ela-RA 990 CG7021-PA 1..990 17..1006 4950 100 Plus
Ela-RB 930 CG7021-PB 293..930 369..1006 3190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Ela-RC 2135 CG7021-RC 20..1011 16..1007 4960 100 Plus
Ela-RA 1187 CG7021-RA 20..1011 16..1007 4960 100 Plus
Ela-RB 1127 CG7021-RB 313..951 369..1007 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24866010..24866527 490..1007 2590 100 Plus
3R 32079331 3R 24865369..24865846 16..493 2390 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:46:39 has no hits.

BS07219.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:13 Download gff for BS07219.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 1..990 17..1006 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:36 Download gff for BS07219.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 13..1020 10..1019 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:15 Download gff for BS07219.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 26..1009 22..1005 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:13 Download gff for BS07219.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 13..1020 10..1019 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:26 Download gff for BS07219.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 26..1009 22..1005 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:26 Download gff for BS07219.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24865375..24865844 22..491 100 -> Plus
3R 24866012..24866525 492..1005 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:15 Download gff for BS07219.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20691097..20691566 22..491 100 -> Plus
arm_3R 20691734..20692247 492..1005 100   Plus

BS07219.pep Sequence

Translation from 16 to 1005

> BS07219.pep
MLSRRVIAFAALALIQIASGQASQFSRDESQEDQKTEFNLASTLTGGITS
SRHRQRANLNSQLYPGLGQLGSGYAGATGSIDDAHGHEQGGSGVRVASTN
SVVFPGNQSPNPALTITGGHQIPAYPPPGFPGQQAPVPYPAAGGSSGGSS
SSGGYQSAGAVSPPGYPVAGAVPAQYPVGVPPQQPVGAGAPGYFPGTGAY
PGYPYPGVYLPQYPAYPQPAQFPAYGVLPGAVAQPGVPGVAGVPGAPGVA
GVPGAAGQAPATSGMNYHRYPAHNPADPSHWDHHFSMNTEYKEDGVHKGP
FGVLNNHNAFGYGSGYGGGYNGAFNSPAY*

BS07219.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ela-PC 329 CG7021-PC 1..329 1..329 1788 100 Plus
Ela-PA 329 CG7021-PA 1..329 1..329 1788 100 Plus
Ela-PB 309 CG7021-PB 1..309 1..329 1647 93.6 Plus
Cpr47Ef-PD 601 CG13214-PD 336..548 65..270 160 33.5 Plus
Sec24CD-PA 1193 CG10882-PA 150..360 79..278 158 31.4 Plus