Clone Sequence Records
BS07223.3prime Sequence
886 bp (863 high quality bases) assembled on 2006-01-06
> BS07223.3prime
ATGGTCTAGAAAGCTTCTAGCCCTTGAGGCTCGTCATGCCCGCACGCATC
ACCTCGTCGACGAGAAGCAGGTTGCTGGCAATGATCGAACAGGAGTTGAG
GATCTGCTTCTTAACGATGTAGTTGTCGTAGACGCCCAGATCCACGGGCT
TCATGGGCTCCCCGGTGGCCAGATCCAGGCCGACCAGTTCGGGACTCAGG
CGATCCTCAACAGTCAGCTTGACGATTGTGTCCTGGGCATCGTAGCCGCT
GTTCACGGCCAGCGTCTTGGGAATGACCAGCAGGGCATCGGCAAAGGCCT
GCACTGCCAGGCGGGACTTGCCCTTGATGGTGTCCTTGAAGGCGACCAGC
TCGTTGTACGCGCGCACCTCGAATGCTCCAGCTCCGGGCACCAGAGCCTT
ATCGGCAATGGTGTTGTTGATGGCACGCAGACCGTCCCTGATGGCGTCCT
TGATCTGGGTGATCGTGTGCTTGTTGGGACCCTTGATCAGGATCGTGACG
GACAGCGGGTTCTTGCAGTCCTCAACGAAAGTGTACTTGTTCTCGCCCAG
AACATGCTCGTACACCACACCGGCGTATCCCAAGTGCTCCTCCTGCAGAT
CGTCAAAGGAGTTCATTGCAGTGCCACCGCAGGCCAAAGACAGACGCTCC
ATGTTGCGGCGCTTGGCGCGACGCAAGGCCAGGATGCCCTCCTTGGCCAG
GGCGTCCAGCGAGATGGGGTCGATGCCCTTCTGGTTGATCAGGACGAAGG
TTTTGTCGGTGCCATCGCACACGGAGCGCTTCAATTCGATCACCTTCTTC
ACACGCTGGTCGATGAATTCGCGCTCGGCGCGCACAAAGGCCTCACGCTC
CTCGGCGGTCTTGTAGAAGAAGCCAGAGTTGACCTC
BS07223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8231-PA | 1602 | l(1)G0022-RA | 733..1602 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tcp-1zeta-RA | 1924 | CG8231-RA | 856..1725 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15747903..15748772 | 886..17 | 4350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:08:27 has no hits.
BS07223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:08 Download gff for
BS07223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8231-PA | 733..1602 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:47 Download gff for
BS07223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8231-PA | 733..1602 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:13 Download gff for
BS07223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 856..1725 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:35 Download gff for
BS07223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 856..1725 | 17..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:35 Download gff for
BS07223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15747903..15748772 | 17..886 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:13 Download gff for
BS07223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15641936..15642805 | 17..886 | 100 | | Minus |
BS07223.5prime Sequence
900 bp (835 high quality bases) assembled on 2006-01-06
> BS07223.5prime
GAAGTTATCAGTCGACATGGCTTCGATTAGCTTGCTGAACCCCAAGGCCG
AGTTTGCCCGCGCCGCCCAGGCTCTGGCCATCAATATCAGTGCCGCCAAG
GGACTGCAGGATGTGATGCGCACCAATTTGGGACCCAAGGGCACCGTTAA
GATGTTGGTTTCTGGCGCCGGCGACATCAAGATCACCAAGGATGGCAATG
TCCTGCTGCACGAAATGCAGATCCAACATCCGACTGCCTCTATGATTGCC
AGGGCCAGCACGGCCCAGGATGATTCCACCGGCGATGGAACCACCACCAC
TGTGATGCTTATTGGCGAGCTCCTGAAGCAGGCCGATATCTATCTGTCCG
AGGGACTGCATCCTCGCATCATGACCGATGGATTCGAGAAGGCACGCGAC
AAGGCATTGGAGGTGCTCGACCAGGTCAAGGTGCCCGTGGAGATCAACAA
GAAGAACCTGGTGGAGGTGGCCAACACAAGTCTGAAGACCAAGGTGCATC
CCGCCCTTGCCGATCTGCTTACGGACGTCTGCGTGAATGCCGTGCTGACC
ATTGCCAGTGCCGATAAGACCAAGCCCGTGGACCTCCACATGGTGGAGCT
GATGGAGATGCAGCACAAATCCGATACCGATACACAGCTGGTGCGTGGAC
TAGTCATGGACCATGGTGCTCGCCACCCGGACATGCCGAAGCGTTTGGAG
AATGCCTACATCCTTACGGCCAATGTCTCGCTGGAGTACGAGAAGGCCGA
GGTCAACTCTGGCTTCTTCTACAAGACCGCCGAGGAGCGTGAGGCCTTTG
TGCGCGCCGAGCGCGAATTCATCGACCAGCGTGTGAAGAAGGTGATCGAA
TTGAAGCGCTCCGTGTGCGATGGCACCGACAAAACCTTCGTCCTGATCAA
BS07223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8231-PA | 1602 | l(1)G0022-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tcp-1zeta-RA | 1924 | CG8231-RA | 124..1007 | 17..900 | 4420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15747308..15748054 | 154..900 | 3735 | 100 | Plus |
| X | 23542271 | X | 15746771..15746909 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:21:53 has no hits.
BS07223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:09 Download gff for
BS07223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8231-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:48 Download gff for
BS07223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8231-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:07 Download gff for
BS07223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 120..1005 | 13..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:44 Download gff for
BS07223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 120..1005 | 13..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:44 Download gff for
BS07223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15746767..15746907 | 13..153 | 98 | -> | Plus |
| X | 15747308..15748052 | 154..898 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:07 Download gff for
BS07223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15640800..15640940 | 13..153 | 98 | -> | Plus |
| arm_X | 15641341..15642085 | 154..898 | 100 | | Plus |
BS07223.complete Sequence
1634 bp (1634 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635773
> BS07223.complete
GAAGTTATCAGTCGACATGGCTTCGATTAGCTTGCTGAACCCCAAGGCCG
AGTTTGCCCGCGCCGCCCAGGCTCTGGCCATCAATATCAGTGCCGCCAAG
GGACTGCAGGATGTGATGCGCACCAATTTGGGACCCAAGGGCACCGTTAA
GATGTTGGTTTCTGGCGCCGGCGACATCAAGATCACCAAGGATGGCAATG
TCCTGCTGCACGAAATGCAGATCCAACATCCGACTGCCTCTATGATTGCC
AGGGCCAGCACGGCCCAGGATGATTCCACCGGCGATGGAACCACCACCAC
TGTGATGCTTATTGGCGAGCTCCTGAAGCAGGCCGATATCTATCTGTCCG
AGGGACTGCATCCTCGCATCATGACCGATGGATTCGAGAAGGCACGCGAC
AAGGCATTGGAGGTGCTCGACCAGGTCAAGGTGCCCGTGGAGATCAACAA
GAAGAACCTGGTGGAGGTGGCCAACACAAGTCTGAAGACCAAGGTGCATC
CCGCCCTTGCCGATCTGCTTACGGACGTCTGCGTGAATGCCGTGCTGACC
ATTGCCAGTGCCGATAAGACCAAGCCCGTGGACCTCCACATGGTGGAGCT
GATGGAGATGCAGCACAAATCCGATACCGATACACAGCTGGTGCGTGGAC
TAGTCATGGACCATGGTGCTCGCCACCCGGACATGCCGAAGCGTTTGGAG
AATGCCTACATCCTTACGGCCAATGTCTCGCTGGAGTACGAGAAGGCCGA
GGTCAACTCTGGCTTCTTCTACAAGACCGCCGAGGAGCGTGAGGCCTTTG
TGCGCGCCGAGCGCGAATTCATCGACCAGCGTGTGAAGAAGGTGATCGAA
TTGAAGCGCTCCGTGTGCGATGGCACCGACAAAACCTTCGTCCTGATCAA
CCAGAAGGGCATCGACCCCATCTCGCTGGACGCCCTGGCCAAGGAGGGCA
TCCTGGCCTTGCGTCGCGCCAAGCGCCGCAACATGGAGCGTCTGTCTTTG
GCCTGCGGTGGCACTGCAATGAACTCCTTTGACGATCTGCAGGAGGAGCA
CTTGGGATACGCCGGTGTGGTGTACGAGCATGTTCTGGGCGAGAACAAGT
ACACTTTCGTTGAGGACTGCAAGAACCCGCTGTCCGTCACGATCCTGATC
AAGGGTCCCAACAAGCACACGATCACCCAGATCAAGGACGCCATCAGGGA
CGGTCTGCGTGCCATCAACAACACCATTGCCGATAAGGCTCTGGTGCCCG
GAGCTGGAGCATTCGAGGTGCGCGCGTACAACGAGCTGGTCGCCTTCAAG
GACACCATCAAGGGCAAGTCCCGCCTGGCAGTGCAGGCCTTTGCCGATGC
CCTGCTGGTCATTCCCAAGACGCTGGCCGTGAACAGCGGCTACGATGCCC
AGGACACAATCGTCAAGCTGACTGTTGAGGATCGCCTGAGTCCCGAACTG
GTCGGCCTGGATCTGGCCACCGGGGAGCCCATGAAGCCCGTGGATCTGGG
CGTCTACGACAACTACATCGTTAAGAAGCAGATCCTCAACTCCTGTTCGA
TCATTGCCAGCAACCTGCTTCTCGTCGACGAGGTGATGCGTGCGGGCATG
ACGAGCCTCAAGGGCTAGAAGCTTTCTAGACCAT
BS07223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tcp-1zeta-RA | 1602 | CG8231-PA | 1..1602 | 17..1618 | 8010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tcp-1zeta-RA | 1924 | CG8231-RA | 124..1725 | 17..1618 | 8010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15747308..15748772 | 154..1618 | 7325 | 100 | Plus |
| X | 23542271 | X | 15746771..15746909 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:07:33 has no hits.
BS07223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:58 Download gff for
BS07223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 1..1602 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:21 Download gff for
BS07223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 142..1747 | 13..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:48 Download gff for
BS07223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 124..1725 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:58 Download gff for
BS07223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 142..1747 | 13..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:41 Download gff for
BS07223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 124..1725 | 17..1618 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:41 Download gff for
BS07223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15746771..15746907 | 17..153 | 100 | -> | Plus |
| X | 15747308..15748772 | 154..1618 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:48 Download gff for
BS07223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15640804..15640940 | 17..153 | 100 | -> | Plus |
| arm_X | 15641341..15642805 | 154..1618 | 100 | | Plus |
BS07223.pep Sequence
Translation from 16 to 1617
> BS07223.pep
MASISLLNPKAEFARAAQALAINISAAKGLQDVMRTNLGPKGTVKMLVSG
AGDIKITKDGNVLLHEMQIQHPTASMIARASTAQDDSTGDGTTTTVMLIG
ELLKQADIYLSEGLHPRIMTDGFEKARDKALEVLDQVKVPVEINKKNLVE
VANTSLKTKVHPALADLLTDVCVNAVLTIASADKTKPVDLHMVELMEMQH
KSDTDTQLVRGLVMDHGARHPDMPKRLENAYILTANVSLEYEKAEVNSGF
FYKTAEEREAFVRAEREFIDQRVKKVIELKRSVCDGTDKTFVLINQKGID
PISLDALAKEGILALRRAKRRNMERLSLACGGTAMNSFDDLQEEHLGYAG
VVYEHVLGENKYTFVEDCKNPLSVTILIKGPNKHTITQIKDAIRDGLRAI
NNTIADKALVPGAGAFEVRAYNELVAFKDTIKGKSRLAVQAFADALLVIP
KTLAVNSGYDAQDTIVKLTVEDRLSPELVGLDLATGEPMKPVDLGVYDNY
IVKKQILNSCSIIASNLLLVDEVMRAGMTSLKG*
BS07223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tcp-1zeta-PA | 533 | CG8231-PA | 1..533 | 1..533 | 2665 | 100 | Plus |
| CG5525-PA | 533 | CG5525-PA | 30..529 | 23..524 | 591 | 29.5 | Plus |
| Cct5-PA | 542 | CG8439-PA | 34..534 | 19..523 | 587 | 30.6 | Plus |
| Cct5-PB | 512 | CG8439-PB | 8..504 | 23..523 | 583 | 30.6 | Plus |
| Cctgamma-PD | 544 | CG8977-PD | 14..522 | 8..524 | 557 | 27.8 | Plus |
