Clone Sequence Records
BS07225.complete Sequence
2834 bp assembled on 2009-12-07
GenBank Submission: KX803449
> BS07225.complete
GAAGTTATCAGTCGACATGTTGCGCATCTATCAAAATACTTACCGGCGCA
CCGCGAGAAAAGCTGTTGTCTACTCCACCAAGGTCGCCTGCTGCAATCAT
TCCACGCTCTGTGGCATCACCAGCCATCCACGTCGGGCGCAGGATAGCGG
GAGCTCCAGTTCGAATGGCAGGCACCGTGGCCACGAGGAGTTCCTACTTG
CCGGCAATCCGGCGCGGGGCTGGCAAATGCCTCCGCCGTCGCGTGGTTAC
GGAATGCTGGTGGTGCGCATACTGCGGGGAGCCCTCAAGCTGCGATACAT
CGTCCTGGGCGGCGCCATCGGCGGGGGCGTGTCGCTGAGCAAAAAATACG
AGGAATGGAAGGATGGACTGCCGAATTTTAAGTGGCTGGAGGATGCCATG
CCGCAGGGCGAACGGTGGAGCCAGTTCTCGCGGAATCTCATTGAGGTGGG
CTCGCTGGTGAAGAACGCCATCGAAGTTGCCAAAGATGACTTAAAGGCCA
AAACAACGGTGGCCGCTTTAGGCATAACATCCGATGAGAGTCGTAAGAAG
TATGAGAAACTCCAGAGCCAGGTGGAGACGCTGCAGACGGAGATCATGAA
CGTCCAGATTAAGTACCAAAAGGAGCTGGAGAAGATGGAGAAGGAGAACC
GTGAACTACGCCAGCAATACCTCATCCTGAAAACAAACAAAAAGACCACG
GCAAAAAAAATCAAAAAATCCCTGATCGACATGTACTCTGAGGTCCTTGA
TGAGCTATCCGGCTACGATACGGGCTACACCATGGCCGATCACCTACCCC
GTGTTGTGGTAGTGGGAGATCAGAGCAGCGGCAAGACCTCTGTCCTGGAA
TCCATTGCTAAGGCTCGCATCTTTCCCCGTGGCAGTGGAGAGATGATGAC
GCGAGCCCCAGTCAAAGTTACTCTGGCTGAAGGACCATACCATGTGGCTC
AGTTCCGTGACTCTGACCGGGAATACGATCTCACCAAGGAGTCTGATCTG
CAGGACCTCCGTCGGGATGTGGAGTTCCGAATGAAGGCGTCGGTGAGAGG
TGGTAAAACCGTCAGCAATGAAGTCATTGCCATGACGGTCAAGGGTCCCG
GTCTGCAACGCATGGTTCTAGTCGATTTGCCAGGAATAATTTCGACCATG
ACTGTCGACATGGCCTCAGACACAAAAGATTCCATTCACCAGATGACCAA
GCATTATATGAGCAATCCGAACGCCATCATTCTCTGCATTCAGGATGGAT
CTGTGGACGCTGAGCGCAGTAATGTGACAGACTTGGTCATGCAGTGCGAT
CCCTTGGGTCGACGCACTATTTTTGTGCTCACAAAGGTGGATCTGGCCGA
GGAGCTCGCCGATCCTGATAGAATAAGGAAAATCCTTTCGGGCAAACTCT
TCCCCATGAAGGCTTTGGGCTACTATGCCGTCGTTACCGGTCGTGGACGA
AAGGATGACAGCATAGATGCTATTCGGCAGTATGAGGAAGACTTCTTTAA
GAACTCCAAGCTTTTCCATCGTCGAGGGGTTATCATGCCCCATCAGGTGA
CCAGCCGCAATCTGAGCTTGGCGGTGTCAGATCGTTTCTGGAAGATGGTG
AGGGAAACCATTGAGCAGCAGGCGGATGCATTTAAGGCGACTAGATTTAA
TCTGGAAACCGAATGGAAAAATAACTTCCCCAGATTGCGCGAGTCTGGTC
GAGATGAGCTGTTCGACAAGGCAAAGGGCGAGATACTGGACGAGGTGGTA
ACGCTCTCGCAAATCTCCGCTAAAAAGTGGGACGACGCTCTGAGCACCAA
GCTATGGGAAAAGCTCTCCAATTATGTGTTTGAAAGCATCTATCTGCCCG
CTGCACAGTCAGGTTCTCAAAATTCCTTCAACACGATGGTAGACATCAAG
TTGCGCCAGTGGGCCGAGCAGGCACTGCCCGCTAAGTCGGTGGAAGCTGG
CTGGGAAGCGTTGCAGCAGGAATTCATATCGCTGATGGAGCGTTCGAAGA
AGGCGCAGGATCACGACGGCATCTTCGATCAGTTGAAGTCTGCGGTGGTG
GATGAGGCTATACGTCGGCACAGCTGGGAGGACAAGGCCATCGACATGCT
TCGCGTTATCCAGCTGAATACGCTGGAGGATCGGTTCGTGCACGACAAGC
AGGAGTGGGATTCGGCGGTTAAGTTCCTGGAGAGTTCGGTGAATGCCAAG
CTCGTGCAGACGGAGGAGACTTTAGCACAAATGTTTGGTCCCGGCCAAAT
GCGACGAATTACCCACTGGCAGTACCTGACGCAGGATCAGCAGAAGAGGC
GAAGCGTTAAGAACGAACTCGACAAAATACTCAAAAACGATACGAAACAT
TTGCCCACCCTGACCCATGATGAACTGACTACGGTTCGCAAGAACCTTCA
GCGTGATAACGTGGATGTGGACACGGACTACATAAGGCAAACGTGGTTCC
CGGTCTACAGAAAACACTTTCTGCAGCAGGCGTTACAGAGGGCAAAGGAT
TGCCGCAAAGCATATTACCTCTACACGCAGCAGGGAGCCGAGTGTGAGAT
ATCCTGCAGCGACGTCGTGCTCTTCTGGCGCATCCAGCAGGTGATCAAGA
TAACAGGCAACGCACTGAGACAGCAAGTAATCAATCGGGAGGCGCGGCGG
CTGGACAAGGAGATCAAAGCGGTGCTGGACGAGTTCAGCGATGACGAGGA
GAAGAAGGGTTACCTGCTCACCGGCAAGCGCGTGCTACTAGCCGAGGAGC
TAATCAAAGTGCGGCAGATCCAAGAGAAGCTGGAGGAGTTCATCAATTCA
CTTAATCAGGAAAAGTAGAAGCTTTCTAGACCAT
BS07225.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Opa1-RB | 2802 | CG8479-PB | 1..2802 | 17..2818 | 14010 | 100 | Plus |
| Opa1-RD | 2793 | CG8479-PD | 1..2793 | 17..2818 | 13840 | 99.7 | Plus |
| Opa1-RA | 2919 | CG8479-PA | 581..2919 | 480..2818 | 11695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Opa1-RB | 3100 | CG8479-RB | 136..2937 | 17..2818 | 14010 | 100 | Plus |
| Opa1-RD | 3091 | CG8479-RD | 136..2928 | 17..2818 | 13840 | 99.7 | Plus |
| Opa1-RA | 3217 | CG8479-RA | 716..3054 | 480..2818 | 11695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14233617..14234207 | 1144..554 | 2955 | 100 | Minus |
| 2R | 25286936 | 2R | 14231492..14231964 | 2344..1872 | 2365 | 100 | Minus |
| 2R | 25286936 | 2R | 14233188..14233566 | 1518..1140 | 1880 | 99.7 | Minus |
| 2R | 25286936 | 2R | 14234890..14235188 | 343..45 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 14230895..14231101 | 2753..2547 | 1035 | 100 | Minus |
| 2R | 25286936 | 2R | 14232716..14232905 | 1871..1682 | 950 | 100 | Minus |
| 2R | 25286936 | 2R | 14232965..14233129 | 1683..1519 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 14234693..14234828 | 479..344 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 14231308..14231427 | 2463..2344 | 600 | 100 | Minus |
| 2R | 25286936 | 2R | 14231160..14231244 | 2548..2464 | 425 | 100 | Minus |
| 2R | 25286936 | 2R | 14234268..14234343 | 554..479 | 380 | 100 | Minus |
| 2R | 25286936 | 2R | 14230774..14230838 | 2818..2754 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:11:27 has no hits.
BS07225.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:43 Download gff for
BS07225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| opa1-like-RB | 140..2936 | 22..2818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:12 Download gff for
BS07225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| opa1-like-RB | 141..2937 | 22..2818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:25 Download gff for
BS07225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| opa1-like-RB | 140..2936 | 22..2818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:57 Download gff for
BS07225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Opa1-RB | 141..2937 | 22..2818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:57 Download gff for
BS07225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14232716..14232903 | 1684..1871 | 100 | <- | Minus |
| 2R | 14232965..14233129 | 1519..1683 | 100 | <- | Minus |
| 2R | 14230774..14230838 | 2754..2818 | 100 | <- | Minus |
| 2R | 14230895..14231099 | 2549..2753 | 100 | <- | Minus |
| 2R | 14231160..14231244 | 2464..2548 | 100 | <- | Minus |
| 2R | 14231308..14231426 | 2345..2463 | 100 | <- | Minus |
| 2R | 14231492..14231964 | 1872..2344 | 100 | <- | Minus |
| 2R | 14233188..14233561 | 1145..1518 | 100 | <- | Minus |
| 2R | 14233617..14234206 | 555..1144 | 100 | <- | Minus |
| 2R | 14234268..14234342 | 480..554 | 100 | <- | Minus |
| 2R | 14234693..14234828 | 344..479 | 100 | <- | Minus |
| 2R | 14234890..14235187 | 46..343 | 100 | <- | Minus |
| 2R | 14235286..14235309 | 22..45 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:12 Download gff for
BS07225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10118400..10118604 | 2549..2753 | 100 | <- | Minus |
| arm_2R | 10118665..10118749 | 2464..2548 | 100 | <- | Minus |
| arm_2R | 10118279..10118343 | 2754..2818 | 100 | <- | Minus |
| arm_2R | 10118813..10118931 | 2345..2463 | 100 | <- | Minus |
| arm_2R | 10118997..10119469 | 1872..2344 | 100 | <- | Minus |
| arm_2R | 10120221..10120408 | 1684..1871 | 100 | <- | Minus |
| arm_2R | 10120470..10120634 | 1519..1683 | 100 | <- | Minus |
| arm_2R | 10120693..10121066 | 1145..1518 | 100 | <- | Minus |
| arm_2R | 10121122..10121711 | 555..1144 | 100 | <- | Minus |
| arm_2R | 10121773..10121847 | 480..554 | 100 | <- | Minus |
| arm_2R | 10122198..10122333 | 344..479 | 100 | <- | Minus |
| arm_2R | 10122395..10122692 | 46..343 | 100 | <- | Minus |
| arm_2R | 10122791..10122814 | 22..45 | 100 | | Minus |
BS07225.3prime Sequence
948 bp (806 high quality bases) assembled on 2006-01-06
> BS07225.3prime
ATGGTCTAGAAAGCTTCTACTTTTCCTGATTAAGTGAATTGATGAACTCC
TCCAGCTTCTCTTGGATCTGCCGCACTTTGATTAGCTCCTCGGCTAGTAG
CACGCGCTTGCCGGTGAGCAGGTAACCCTTCTTCTCCTCGTCATCGCTGA
ACTCGTCCAGCACCGCTTTGATCTCCTTGTCCAGCCGCCGCGCCTCCCGA
TTGATTACTTGCTGTCTCAGTGCGTTGCCTGTTATCTTGATCACCTGCTG
GATGCGCCAGAAGAGCACGACGTCGCTGCAGGATATCTCACACTCGGCTC
CCTGCTGCGTGTAGAGGTAATATGCTTTGCGGCAATCCTTTGCCCTCTGT
AACGCCTGCTGCAGAAAGTGTTTTCTGTAGACCGGGAACCACGTTTGCCT
TATGTAGTCCGTGTCCACATCCACGTTATCACGCTGAAGGTTCTTGCGAA
CCGTAGTCAGTTCATCATGGGTCAGGGTGGGCAAATGTTTCGTATCGTTT
TTGAGTATTTTGTCGAGTTCGTTCTTAACGCTTCGCCTCTTCTGCTGATC
CTGCGTCAGGTACTGCCAGTGGGTAATTCGTCGCATTTGGCCGGGACCAA
ACATTTGTGCTAAAGTCTCCTCCGTCTGCACGAGCTTGGCATTCACCGAA
CTCTCCAGGAACTTAACCGCCGAATCCCACTCCTGCTTGTCGTGCACGAA
CCGATCCTCCAGCGTATTCAGCTGGATAACGCGAAGCATGTCGATGGCCT
TGTCCTCCCAGCTGTGCCGACGTATAGCCTCATCCACCACCGCAGACTTC
AACTGATCGAAGATGCCGTCGTGATCCTGCGCCTTCTTCGAACGCTCCAT
CAGCGATATGAATTCCTGCTGCAACGCTTCCCAGCCAGCTTCCACCGACT
TAGCGGGCAGTGCCTGCTCGGCCCACTGGCGCACTTGATGTCTACCAT
BS07225.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8479-PB | 2802 | CG8479-RB | 1886..2802 | 933..17 | 4585 | 100 | Minus |
| CG8479-PA | 2919 | CG8479-RA | 2003..2919 | 933..17 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Opa1-RE | 3851 | CG8479-RE | 2756..3688 | 948..17 | 4640 | 99.9 | Minus |
| Opa1-RD | 3091 | CG8479-RD | 1996..2928 | 948..17 | 4640 | 99.9 | Minus |
| Opa1-RC | 3208 | CG8479-RC | 2113..3045 | 948..17 | 4640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14231492..14231950 | 491..948 | 2245 | 99.8 | Plus |
| 2R | 25286936 | 2R | 14230895..14231101 | 82..288 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 14231308..14231427 | 372..491 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 14231160..14231244 | 287..371 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 14230774..14230838 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:01:47 has no hits.
BS07225.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:13 Download gff for
BS07225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8479-PB | 1870..2802 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:52 Download gff for
BS07225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8479-PA | 1987..2919 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:01:27 Download gff for
BS07225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| opa1-like-RC | 2113..3045 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:29 Download gff for
BS07225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Opa1-RC | 2113..3045 | 17..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:29 Download gff for
BS07225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14230774..14230838 | 17..81 | 100 | <- | Plus |
| 2R | 14230895..14231099 | 82..286 | 100 | <- | Plus |
| 2R | 14231160..14231244 | 287..371 | 100 | <- | Plus |
| 2R | 14231308..14231426 | 372..490 | 100 | <- | Plus |
| 2R | 14231492..14231950 | 491..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:01:27 Download gff for
BS07225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10118279..10118343 | 17..81 | 100 | <- | Plus |
| arm_2R | 10118400..10118604 | 82..286 | 100 | <- | Plus |
| arm_2R | 10118665..10118749 | 287..371 | 100 | <- | Plus |
| arm_2R | 10118813..10118931 | 372..490 | 100 | <- | Plus |
| arm_2R | 10118997..10119455 | 491..948 | 99 | | Plus |
BS07225.5prime Sequence
829 bp (815 high quality bases) assembled on 2006-01-06
> BS07225.5prime
GAAGTTATCAGTCGACATGTTGCGCATCTATCAAAATACTTACCGGCGCA
CCGCGAGAAAAGCTGTTGTCTACTCCACCAAGGTCGCCTGCTGCAATCAT
TCCACGCTCTGTGGCATCACCAGCCATCCACGTCGGGCGCAGGATAGCGG
GAGCTCCAGTTCGAATGGCAGGCACCGTGGCCACGAGGAGTTCCTACTTG
CCGGCAATCCGGCGCGGGGCTGGCAAATGCCTCCGCCGTCGCGTGGTTAC
GGAATGCTGGTGGTGCGCATACTGCGGGGAGCCCTCAAGCTGCGATACAT
CGTCCTGGGCGGCGCCATCGGCGGGGGCGTGTCGCTGAGCAAAAAATACG
AGGAATGGAAGGATGGACTGCCGAATTTTAAGTGGCTGGAGGATGCCATG
CCGCAGGGCGAACGGTGGAGCCAGTTCTCGCGGAATCTCATTGAGGTGGG
CTCGCTGGTGAAGAACGCCATCGAAGTTGCCAAAGATGACTTAAAGGCCA
AAACAACGGTGGCCGCTTTAGGCATAACATCCGATGAGAGTCGTAAGAAG
TATGAGAAACTCCAGAGCCAGGTGGAGACGCTGCAGACGGAGATCATGAA
CGTCCAGATTAAGTACCAAAAGGAGCTGGAGAAGATGGAGAAGGAGAACC
GTGAACTACGCCAGCAATACCTCATCCTGAAAACAAACAAAAAGACCACG
GCAAAAAAAATCAAAAAATCCCTGATCGACATGTACTCTGAGGTCCTTGA
TGAGCTATCCGGCTACGATACGGGCTACACCATGGCCGATCACCTACCCC
GTGTTGTGGTAGTGGGAGATCAGAGCAGC
BS07225.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8479-PB | 2802 | CG8479-RB | 1..813 | 17..829 | 4065 | 100 | Plus |
| CG8479-PA | 2919 | CG8479-RA | 1..463 | 17..479 | 2315 | 100 | Plus |
| CG8479-PA | 2919 | CG8479-RA | 581..930 | 480..829 | 1750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Opa1-RE | 3851 | CG8479-RE | 136..948 | 17..829 | 4065 | 100 | Plus |
| Opa1-RD | 3091 | CG8479-RD | 136..948 | 17..829 | 4065 | 100 | Plus |
| Opa1-RB | 3100 | CG8479-RB | 136..948 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14234890..14235188 | 343..45 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 14233932..14234207 | 829..554 | 1380 | 100 | Minus |
| 2R | 25286936 | 2R | 14234693..14234828 | 479..344 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 14234268..14234343 | 554..479 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:36:40 has no hits.
BS07225.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:14 Download gff for
BS07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8479-PB | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:53 Download gff for
BS07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8479-PB | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:36:01 Download gff for
BS07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| opa1-like-RB | 128..948 | 9..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:20:57 Download gff for
BS07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Opa1-RB | 128..948 | 9..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:20:57 Download gff for
BS07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14233932..14234206 | 555..829 | 100 | <- | Minus |
| 2R | 14234268..14234342 | 480..554 | 100 | <- | Minus |
| 2R | 14234693..14234828 | 344..479 | 100 | <- | Minus |
| 2R | 14234890..14235187 | 46..343 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:36:01 Download gff for
BS07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10121773..10121847 | 480..554 | 100 | <- | Minus |
| arm_2R | 10121437..10121711 | 555..829 | 100 | <- | Minus |
| arm_2R | 10122198..10122333 | 344..479 | 100 | <- | Minus |
| arm_2R | 10122395..10122692 | 46..343 | 100 | <- | Minus |
BS07225.pep Sequence
Translation from 16 to 2817
> BS07225.pep
MLRIYQNTYRRTARKAVVYSTKVACCNHSTLCGITSHPRRAQDSGSSSSN
GRHRGHEEFLLAGNPARGWQMPPPSRGYGMLVVRILRGALKLRYIVLGGA
IGGGVSLSKKYEEWKDGLPNFKWLEDAMPQGERWSQFSRNLIEVGSLVKN
AIEVAKDDLKAKTTVAALGITSDESRKKYEKLQSQVETLQTEIMNVQIKY
QKELEKMEKENRELRQQYLILKTNKKTTAKKIKKSLIDMYSEVLDELSGY
DTGYTMADHLPRVVVVGDQSSGKTSVLESIAKARIFPRGSGEMMTRAPVK
VTLAEGPYHVAQFRDSDREYDLTKESDLQDLRRDVEFRMKASVRGGKTVS
NEVIAMTVKGPGLQRMVLVDLPGIISTMTVDMASDTKDSIHQMTKHYMSN
PNAIILCIQDGSVDAERSNVTDLVMQCDPLGRRTIFVLTKVDLAEELADP
DRIRKILSGKLFPMKALGYYAVVTGRGRKDDSIDAIRQYEEDFFKNSKLF
HRRGVIMPHQVTSRNLSLAVSDRFWKMVRETIEQQADAFKATRFNLETEW
KNNFPRLRESGRDELFDKAKGEILDEVVTLSQISAKKWDDALSTKLWEKL
SNYVFESIYLPAAQSGSQNSFNTMVDIKLRQWAEQALPAKSVEAGWEALQ
QEFISLMERSKKAQDHDGIFDQLKSAVVDEAIRRHSWEDKAIDMLRVIQL
NTLEDRFVHDKQEWDSAVKFLESSVNAKLVQTEETLAQMFGPGQMRRITH
WQYLTQDQQKRRSVKNELDKILKNDTKHLPTLTHDELTTVRKNLQRDNVD
VDTDYIRQTWFPVYRKHFLQQALQRAKDCRKAYYLYTQQGAECEISCSDV
VLFWRIQQVIKITGNALRQQVINREARRLDKEIKAVLDEFSDDEEKKGYL
LTGKRVLLAEELIKVRQIQEKLEEFINSLNQEK*
BS07225.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Opa1-PB | 933 | CG8479-PB | 1..933 | 1..933 | 4786 | 100 | Plus |
| Opa1-PD | 930 | CG8479-PD | 1..930 | 1..933 | 4752 | 99.6 | Plus |
| Opa1-PA | 972 | CG8479-PA | 1..972 | 1..933 | 4732 | 95.9 | Plus |
| Opa1-PC | 969 | CG8479-PC | 1..969 | 1..933 | 4698 | 95.5 | Plus |
| Opa1-PE | 622 | CG8479-PE | 1..620 | 1..620 | 3166 | 99.7 | Plus |
