Clone Sequence Records
BS07226.3prime Sequence
860 bp (831 high quality bases) assembled on 2006-01-06
> BS07226.3prime
ATGGTCTAGAAAGCTTTCAGGACATTGTTTCGCGGCGCTCCTTCTTCTTC
GATTTGCTCCGCTTGGCTGGCTGCGGCTTCTGCTCCTTCACTTCCTTCGC
AGACGTCTCTTCGAGAATCCGCTGGAAGAGCAGCGCACTGGTTTGCCCGT
CCAATTGACGGCTCTCGCCGAGTCCCGCAGGACTGTTGGAGCTGTTGGGG
CTGGTGGCAAAACTCTCGGCCAAGTAATTCCAGCCACGTTGCGCGGTGGG
GACGCTCAGCTTATCGAGCAGCCGGTTGGCCAGCTGGGGAATTATGGGCT
GCAACACAATGCCGCTGAGCCGCAACGCGTCCATTGTCATGGCGATTATG
GTCTCCAAACGGGCCTGGTTGCCATCCGGTGCTCCCGCCTTTAGCGTCCA
GGGCTTGGAGCTCTCGAAGAAGTTGTTGGCCGCATGCAGAGCCGCCATCG
TTGTGTCGGCCACCAAGTGGAAGTGATTGCACTCATAATGCGACTCGCAT
CGCTCTGACAGCTGCAGAAGCGAATCCTGCAGGCGTTTTGCCACATCCAG
GCTCCGGAGGAGATCCGCCAAGTGCTCCGCGCTGGGTGATGGATAGATTT
GGCCGGGATTCAGCGACTTGGCACTGGCACGCGATAGCAGATTGCCCAGG
GTGTCCGCCAGCTCCGAGTTGAGGATGCGCTGCGCCTTTACGTGGCTGTA
GTTGCCATCGCTGTGGGCCACGCCCTCCCGCAGAAGGAAGTATCGCAGGC
CCTCCATGGTGTACTGCTGCGCTGCCTGGAGGGGATCCACCACGTTGTGC
TTGCTCTTTGACATCTTCTGCCCATCGACGGTCCAATGCGAGTGAACGTA
CAGCTGTCCA
BS07226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31322-PA | 1749 | Aats-met-RA | 906..1749 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-met-RC | 4314 | CG31322-RC | 990..1834 | 860..16 | 4225 | 100 | Minus |
| Aats-met-RB | 2337 | CG31322-RB | 990..1834 | 860..16 | 4225 | 100 | Minus |
| Aats-met-RA | 1862 | CG31322-RA | 990..1834 | 860..16 | 4225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14251523..14252014 | 16..507 | 2460 | 100 | Plus |
| 3R | 32079331 | 3R | 14252631..14252828 | 505..702 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 14258631..14258788 | 703..860 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 15:15:20 has no hits.
BS07226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:15 Download gff for
BS07226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31322-PA | 907..1749 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:55 Download gff for
BS07226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31322-PA | 907..1749 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:04:03 Download gff for
BS07226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 991..1834 | 16..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:43:03 Download gff for
BS07226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 991..1834 | 16..859 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:43:03 Download gff for
BS07226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14251523..14252011 | 16..504 | 100 | <- | Plus |
| 3R | 14252631..14252828 | 505..702 | 100 | <- | Plus |
| 3R | 14258631..14258787 | 703..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:04:03 Download gff for
BS07226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10077245..10077733 | 16..504 | 100 | <- | Plus |
| arm_3R | 10078353..10078550 | 505..702 | 100 | <- | Plus |
| arm_3R | 10084353..10084509 | 703..859 | 100 | | Plus |
BS07226.5prime Sequence
958 bp (812 high quality bases) assembled on 2006-01-06
> BS07226.5prime
GAAGTTATCAGTCGACATGCTTATTAGAAGAATTAAGTGCCTCAGATATT
TGGGAACTCGCTACAACAGTTCGCACTATGTGACAACTCCAATTTTCTAT
GTAAATGCAGCTCCTCACATTGGACACCTGTACTCAGCGGTCATAGCCGA
TGCCCACTGTCGCTACCAGAGGCTAAGGTATCCAGAGCAGGATGTACGAC
TCTGCACGGGAACGGATGAGCACGGCACAAAGATCCAGCAGGCGGCATCT
CTTCACGGGGTGCCCGTTGCCAAATACTGTGATGATATATCGCAGCGATA
TCGAGAGGTCTTCCGCAGTGCCAGCATCCAGCAGGATGACTTTATTCGCA
CCACGGAGGATCGCCACAAGCGGGCAGTGGCCAATTTCTGGCGCACACTT
CACACACGCGGCCACATATATTCGGCCGCCTACAGTGGTTGGTATTGCGT
GTCTGACGAAACCTTCCTCACCGACTCCCAGCTGAGATTGGACGAGGCCA
CTGGTACCCGATACTCCCTGGAATCTGGACATCCCGTCGAGTGGACCGAG
GAAACGAACTATATGTTTCGACTGTCACAATTCCAGGACGATGTGCGCCA
TTGGGTGAAAACGGAGGCGCGCGTACGTCCGGCCAAGTTCGAAAAGATTC
TGCTGGATACGCTCAGCGAACCACTGCCGGATGTATCGGTATCACGTCCT
TCCAACCGCGTACACTGGGCCATTCCCGTTCCCGATGATGACTCGCAGAC
TGTCTACGTCTGGTTAGATGCTTTAGTCAACTATCTCAGCTCTGTGGGAT
ATCCAGATGAAAAGTTTTCTGCCCACTGGCCACCGGCGCAGCAAGTGATA
GGGAAGGACATCCTCAAGTTCCATGGCATTTACTGGACAGCTTTCCTCCT
GCCTGCGGCTTGGAACCTCCTGGACAGCTGTACGTTCACTCGCATTGAAC
CGTCGAAG
BS07226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31322-PA | 1749 | Aats-met-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
| CG31322-PA | 1749 | Aats-met-RA | 891..941 | 906..956 | 230 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-met-RC | 4314 | CG31322-RC | 85..1025 | 17..956 | 4650 | 99.7 | Plus |
| Aats-met-RB | 2337 | CG31322-RB | 85..1025 | 17..956 | 4650 | 99.7 | Plus |
| Aats-met-RA | 1862 | CG31322-RA | 85..1025 | 17..956 | 4650 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14258963..14259386 | 814..391 | 2120 | 100 | Minus |
| 3R | 32079331 | 3R | 14259467..14259749 | 391..109 | 1415 | 100 | Minus |
| 3R | 32079331 | 3R | 14258753..14258897 | 956..813 | 645 | 97.9 | Minus |
| 3R | 32079331 | 3R | 14259814..14259907 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:45:04 has no hits.
BS07226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:16 Download gff for
BS07226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31322-PA | 1..943 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:56 Download gff for
BS07226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31322-PA | 1..943 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:32:35 Download gff for
BS07226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 77..1027 | 5..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:42 Download gff for
BS07226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 77..1027 | 5..958 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:42 Download gff for
BS07226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14258751..14258895 | 815..958 | 97 | <- | Minus |
| 3R | 14258963..14259385 | 392..814 | 100 | <- | Minus |
| 3R | 14259467..14259747 | 111..391 | 100 | <- | Minus |
| 3R | 14259814..14259909 | 17..110 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:32:35 Download gff for
BS07226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10084473..10084617 | 815..958 | 97 | <- | Minus |
| arm_3R | 10084685..10085107 | 392..814 | 100 | <- | Minus |
| arm_3R | 10085189..10085469 | 111..391 | 100 | <- | Minus |
| arm_3R | 10085536..10085631 | 17..110 | 97 | <- | Minus |
BS07226.complete Sequence
1781 bp assembled on 2007-10-31
GenBank Submission: FJ635774
> BS07226.complete
GAAGTTATCAGTCGACATGCTTATTAGAAGAATTAAGTGCCTCAGATATT
TGGGAACTCGCTACAACAGTTCGCACTATGTGACAACTCCAATTTTCTAT
GTAAATGCAGCTCCTCACATTGGACACCTGTACTCAGCGGTCATAGCCGA
TGCCCACTGTCGCTACCAGAGGCTAAGGTATCCAGAGCAGGATGTACGAC
TCTGCACGGGAACGGATGAGCACGGCACAAAGATCCAGCAGGCGGCATCT
CTTCACGGGGTGCCCGTTGCCAAATACTGTGATGATATATCGCAGCGATA
TCGAGAGGTCTTCCGCAGTGCCAGCATCCAGCAGGATGACTTTATTCGCA
CCACGGAGGATCGCCACAAGCGGGCAGTGGCCAATTTCTGGCGCACACTT
CACACACGCGGCCACATATATTCGGCCGCCTACAGTGGTTGGTATTGCGT
GTCTGACGAAACCTTCCTCACCGACTCCCAGCTGAGATTGGACGAGGCCA
CTGGTACCCGATACTCCCTGGAATCTGGACATCCCGTCGAGTGGACCGAG
GAAACGAACTATATGTTTCGACTGTCACAATTCCAGGACGATGTGCGCCA
TTGGGTGAAAACGGAGGCGCGCGTACGTCCGGCCAAGTTCGAAAAGATTC
TGCTGGATACGCTCAGCGAACCACTGCCGGATGTATCGGTATCACGTCCT
TCCAACCGCGTACACTGGGCCATTCCCGTTCCCGATGATGACTCGCAGAC
TGTCTACGTCTGGTTAGATGCTTTAGTCAACTATCTCAGCTCTGTGGGAT
ATCCAGATGAAAAGTTTTCTGCCCACTGGCCACCGGCGCAGCAAGTGATA
GGGAAGGACATCCTCAAGTTCCATGGCATTTACTGGACAGCTTTCCTCCT
GGCTGCGGGCTTGGAACCTCCTGGACAGCTGTACGTTCACTCGCATTGGA
CCGTCGATGGGCAGAAGATGTCAAAGAGCAAGCACAACGTGGTGGATCCC
CTCCAGGCAGCGCAGCAGTACACCATGGAGGGCCTGCGATACTTCCTTCT
GCGGGAGGGCGTGGCCCACAGCGATGGCAACTACAGCCACGTAAAGGCGC
AGCGCATCCTCAACTCGGAGCTGGCGGACACCCTGGGCAATCTGCTATCG
CGTGCCAGTGCCAAGTCGCTGAATCCCGGCCAAATCTATCCATCACCCAG
CGCGGAGCACTTGGCGGATCTCCTCCGGAGCCTGGATGTGGCAAAACGCC
TGCAGGATTCGCTTCTGCAGCTGTCAGAGCGATGCGAGTCGCATTATGAG
TGCAATCACTTCCACTTGGTGGCCGACACAACGATGGCGGCTCTGCATGC
GGCCAACAACTTCTTCGAGAGCTCCAAGCCCTGGACGCTAAAGGCGGGAG
CACCGGATGGCAACCAGGCCCGTTTGGAGACCATAATCGCCATGACAATG
GACGCGTTGCGGCTCAGCGGCATTGTGTTGCAGCCCATAATTCCCCAGCT
GGCCAACCGGCTGCTCGATAAGCTGAGCGTCCCCACCGCGCAACGTGGCT
GGAATTACTTGGCCGAGAGTTTTGCCACCAGCCCCAACAGCTCCAACAGT
CCTGCGGGACTCGGCGAGAGCCGTCAATTGGACGGGCAAACCAGTGCGCT
GCTCTTCCAGCGGATTCTCGAAGAGACGTCTGCGAAGGAAGTGAAGGAGC
AGAAGCCGCAGCCAGCCAAGCGGAGCAAATCGAAGAAGAAGGAGCGCCGC
GAAACAATGTCCTGAAAGCTTTCTAGACCAT
BS07226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-met-RC | 1749 | CG31322-PC | 1..1749 | 17..1765 | 8730 | 99.9 | Plus |
| Aats-met-RB | 1749 | CG31322-PB | 1..1749 | 17..1765 | 8730 | 99.9 | Plus |
| Aats-met-RA | 1749 | CG31322-PA | 1..1749 | 17..1765 | 8730 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-met-RC | 4314 | CG31322-RC | 85..1834 | 17..1766 | 8735 | 99.9 | Plus |
| Aats-met-RB | 2337 | CG31322-RB | 85..1834 | 17..1766 | 8735 | 99.9 | Plus |
| Aats-met-RA | 1862 | CG31322-RA | 85..1834 | 17..1766 | 8735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14251523..14252014 | 1766..1275 | 2460 | 100 | Minus |
| 3R | 32079331 | 3R | 14258963..14259386 | 814..391 | 2120 | 100 | Minus |
| 3R | 32079331 | 3R | 14259467..14259749 | 391..109 | 1415 | 100 | Minus |
| 3R | 32079331 | 3R | 14258631..14258897 | 1079..813 | 1320 | 99.6 | Minus |
| 3R | 32079331 | 3R | 14252631..14252828 | 1277..1080 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 14259814..14259907 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:09:39 has no hits.
BS07226.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:59 Download gff for
BS07226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 1..1749 | 17..1765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:36:21 Download gff for
BS07226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 72..1829 | 5..1766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:14 Download gff for
BS07226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 85..1832 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:59 Download gff for
BS07226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 80..1827 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:44 Download gff for
BS07226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 85..1832 | 17..1764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:44 Download gff for
BS07226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14258631..14258895 | 815..1079 | 99 | <- | Minus |
| 3R | 14258963..14259385 | 392..814 | 100 | <- | Minus |
| 3R | 14259467..14259747 | 111..391 | 100 | <- | Minus |
| 3R | 14259814..14259907 | 17..110 | 100 | | Minus |
| 3R | 14251525..14252011 | 1278..1764 | 100 | <- | Minus |
| 3R | 14252631..14252828 | 1080..1277 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:14 Download gff for
BS07226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10084353..10084617 | 815..1079 | 99 | <- | Minus |
| arm_3R | 10077247..10077733 | 1278..1764 | 100 | <- | Minus |
| arm_3R | 10078353..10078550 | 1080..1277 | 100 | <- | Minus |
| arm_3R | 10084685..10085107 | 392..814 | 100 | <- | Minus |
| arm_3R | 10085189..10085469 | 111..391 | 100 | <- | Minus |
| arm_3R | 10085536..10085629 | 17..110 | 100 | | Minus |
BS07226.pep Sequence
Translation from 16 to 1764
> BS07226.pep
MLIRRIKCLRYLGTRYNSSHYVTTPIFYVNAAPHIGHLYSAVIADAHCRY
QRLRYPEQDVRLCTGTDEHGTKIQQAASLHGVPVAKYCDDISQRYREVFR
SASIQQDDFIRTTEDRHKRAVANFWRTLHTRGHIYSAAYSGWYCVSDETF
LTDSQLRLDEATGTRYSLESGHPVEWTEETNYMFRLSQFQDDVRHWVKTE
ARVRPAKFEKILLDTLSEPLPDVSVSRPSNRVHWAIPVPDDDSQTVYVWL
DALVNYLSSVGYPDEKFSAHWPPAQQVIGKDILKFHGIYWTAFLLAAGLE
PPGQLYVHSHWTVDGQKMSKSKHNVVDPLQAAQQYTMEGLRYFLLREGVA
HSDGNYSHVKAQRILNSELADTLGNLLSRASAKSLNPGQIYPSPSAEHLA
DLLRSLDVAKRLQDSLLQLSERCESHYECNHFHLVADTTMAALHAANNFF
ESSKPWTLKAGAPDGNQARLETIIAMTMDALRLSGIVLQPIIPQLANRLL
DKLSVPTAQRGWNYLAESFATSPNSSNSPAGLGESRQLDGQTSALLFQRI
LEETSAKEVKEQKPQPAKRSKSKKKERRETMS*
BS07226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-met-PC | 582 | CG31322-PC | 1..582 | 1..582 | 3061 | 100 | Plus |
| Aats-met-PB | 582 | CG31322-PB | 1..582 | 1..582 | 3061 | 100 | Plus |
| Aats-met-PA | 582 | CG31322-PA | 1..582 | 1..582 | 3061 | 100 | Plus |
| CG15100-PA | 1022 | CG15100-PA | 258..764 | 22..504 | 274 | 23.5 | Plus |
