Clone BS07228 Report

Search the DGRC for BS07228

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG13630-RA
Protein status:BS07228.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07228.3prime Sequence

914 bp (805 high quality bases) assembled on 2006-01-06

> BS07228.3prime
ATGGTCTAGAAAGCTTTCACATCTTGTCCATGAACCACGGCTGTCCGTTG
TTCTCGCGACGCTTGGTGAGAATCTCGCATCCGGTTTCGTTGACCAGCAG
TGTCTGCTCAAACTGGGCGGAGTACAGGCCATCGGCGGTCACAGCAGTCC
AGTCATCTGGCCAGGTTTCAGCCTTCTGGACGCCAACGGAGATCATGGGC
TCGATGGTGAAGCAGTGGCCAGGGGCCATTACTCCTACGGCAGAGTTTTT
GGCATAGTGAGGCACATTGGGAGCTGTGTGGAAAACACGGTGAATGCCAT
GACCGCAATAGCTGCGCACCACGCTGAATCCATGTGGTGCCACATACTTT
TGGATCACGTTGCCAATATCGCGATACTTTTCACCCGGACGCACGAACTC
AATGGCCTTGCTGAGCGCCTCGTGGGTGACCTGCACCAGTTTCTTGTGCT
TCTCCGAGACATTGCCCACAAAGAAGGTCTCGTTGAGATCACCATGGAAG
CCGCGATGATAGACGGTCACATCGATGTTACATAGATCTCCATCCTGTAG
AGGACGCTGATCGGGGATGCCGTGGCAAATCACCTCGTTGACCGATGTGC
AACAGGACTTGGGGAAGTTGTAGTAGTTGAGGGGCGACGGATAGCACTCC
CGTTCGATGGCGGCCTCGTGGACCAAACGATCCAGTTCGTCGGTGGTGAT
GCCCACCTCCACGGCTTTGGCACCCTCATCCAAGCATTCTCGACCCAATC
TGCCGGCCACTCGCATGCCCTCGATCTCCTCGTCGTCCAGCACCTTAATC
TTGGTGCCCCGCAGTGCTTCCTCCGAGAGTGAACGTCCTGCTGGATGATC
GGCGTAATCTGGACGTTGTATGGCGTTCGGAACTGTTCGCTTGGGAGTCT
GTGGGAAACGGCGG

BS07228.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13630-PA 1125 CG13630-RA 235..1125 907..17 4455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13630-RA 1301 CG13630-RA 311..1208 914..17 4460 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24718321..24718985 250..914 3295 99.7 Plus
3R 32079331 3R 24718030..24718275 17..262 1170 98.4 Plus
Blast to na_te.dros performed on 2015-02-12 04:01:02 has no hits.

BS07228.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:20 Download gff for BS07228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13630-PA 228..1125 17..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:00 Download gff for BS07228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13630-PA 228..1125 17..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:14 Download gff for BS07228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 311..1208 17..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:13 Download gff for BS07228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 311..1208 17..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:13 Download gff for BS07228.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24718030..24718262 17..249 100 <- Plus
3R 24718321..24718985 250..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:14 Download gff for BS07228.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20543752..20543984 17..249 100 <- Plus
arm_3R 20544043..20544707 250..914 99   Plus

BS07228.5prime Sequence

892 bp (891 high quality bases) assembled on 2006-01-06

> BS07228.5prime
GAAGTTATCAGTCGACATGACTCAAAAGTGCGAGACAACCAACTGCGGCA
AGGATGCGACCCTGCAGTGTCCCACCTGCCTAAAGTTGGGCATCAAGGGC
TCATTTTTCTGCTCGCAGCCGTGCTTCAAAGGATTCTGGAAGGAGCACAA
GGCGATTCATGCTTTAGCAGCCGGTGCCTCGAACTCTGCCGAACAGGATG
GAGCCTACAATCCATGGCCACATTTCCGCTTCACCGGCAAGCTCCGCCCG
TTCCCACAGACTCCCAAGCGAACAGTTCCGAACGCCATACAACGTCCAGA
TTACGCCGATCATCCAGCAGGACGTTCACTCTCGGAGGAAGCACTGCGGG
GCACCAAGATTAAGGTGCTGGACGACGAGGAGATCGAGGGCATGCGAGTG
GCCGGCAGATTGGGTCGAGAATGCTTGGATGAGGGTGCCAAAGCCGTGGA
GGTGGGCATCACCACCGACGAACTGGATCGTTTGGTCCACGAGGCCGCCA
TCGAACGGGAGTGCTATCCGTCGCCCCTCAACTACTACAACTTCCCCAAG
TCCTGTTGCACATCGGTCAACGAGGTGATTTGCCACGGCATCCCCGATCA
GCGTCCTCTACAGGATGGAGATCTATGTAACATCGATGTGACCGTCTATC
ATCGCGGCTTCCATGGTGATCTCAACGAGACCTTCTTTGTGGGCAATGTC
TCGGAGAAGCACAAGAAACTGGTGCAGGTCACCCACGAGGCGCTCAGCAA
GGCCATTGAGTTCGTGCGTCCGGGTGAAAAGTATCGCGATATTGGCAACG
TGATCCAAAAGTATGTGGCACCACATGGATTCAGCGTGGTGCGCAGCTAT
TGCGGTCATGGCATTCACCCGTGTTTCCACACAGCTCCCAAT

BS07228.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13630-PA 1125 CG13630-RA 1..853 17..869 4265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13630-RA 1301 CG13630-RA 84..959 17..892 4335 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24718337..24719061 892..168 3565 99.4 Minus
3R 32079331 3R 24719128..24719281 170..17 770 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:19:56 has no hits.

BS07228.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:21 Download gff for BS07228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13630-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:02 Download gff for BS07228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13630-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:58:14 Download gff for BS07228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 82..959 14..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:16 Download gff for BS07228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 82..959 14..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:16 Download gff for BS07228.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24718337..24719058 171..892 99 <- Minus
3R 24719128..24719283 14..170 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:58:14 Download gff for BS07228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20544059..20544780 171..892 99 <- Minus
arm_3R 20544850..20545005 14..170 99   Minus

BS07228.complete Sequence

1157 bp (1157 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635775

> BS07228.complete
GAAGTTATCAGTCGACATGACTCAAAAGTGCGAGACAACCAACTGCGGCA
AGGATGCGACCCTGCAGTGTCCCACCTGCCTAAAGTTGGGCATCAAGGGC
TCATTTTTCTGCTCGCAGCCGTGCTTCAAAGGATTCTGGAAGGAGCACAA
GGCGATTCATGCTTTAGCAGCCGGTGCCTCGAACTCTGCCGAACAGGATG
GAGCCTACAATCCATGGCCACATTTCCGCTTCACCGGCAAGCTCCGCCCG
TTCCCACAGACTCCCAAGCGAACAGTTCCGAACGCCATACAACGTCCAGA
TTACGCCGATCATCCAGCAGGACGTTCACTCTCGGAGGAAGCACTGCGGG
GCACCAAGATTAAGGTGCTGGACGACGAGGAGATCGAGGGCATGCGAGTG
GCCGGCAGATTGGGTCGAGAATGCTTGGATGAGGGTGCCAAAGCCGTGGA
GGTGGGCATCACCACCGACGAACTGGATCGTTTGGTCCACGAGGCCGCCA
TCGAACGGGAGTGCTATCCGTCGCCCCTCAACTACTACAACTTCCCCAAG
TCCTGTTGCACATCGGTCAACGAGGTGATTTGCCACGGCATCCCCGATCA
GCGTCCTCTACAGGATGGAGATCTATGTAACATCGATGTGACCGTCTATC
ATCGCGGCTTCCATGGTGATCTCAACGAGACCTTCTTTGTGGGCAATGTC
TCGGAGAAGCACAAGAAACTGGTGCAGGTCACCCACGAGGCGCTCAGCAA
GGCCATTGAGTTCGTGCGTCCGGGTGAAAAGTATCGCGATATTGGCAACG
TGATCCAAAAGTATGTGGCACCACATGGATTCAGCGTGGTGCGCAGCTAT
TGCGGTCATGGCATTCACCGTGTTTTCCACACAGCTCCCAATGTGCCTCA
CTATGCCAAAAACTCTGCCGTAGGAGTAATGGCCCCTGGCCACTGCTTCA
CCATCGAGCCCATGATCTCCGTTGGCGTCCAGAAGGCTGAAACCTGGCCA
GATGACTGGACTGCTGTGACCGCCGATGGCCTGTACTCCGCCCAGTTTGA
GCAGACACTGCTGGTCAACGAAACCGGATGCGAGATTCTCACCAAGCGTC
GCGAGAACAACGGACAGCCGTGGTTCATGGACAAGATGTGAAAGCTTTCT
AGACCAT

BS07228.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13630-RA 1125 CG13630-PA 1..1125 17..1141 5625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13630-RA 1301 CG13630-RA 84..1208 17..1141 5625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24718321..24719061 908..168 3705 100 Minus
3R 32079331 3R 24718030..24718275 1141..896 1170 98.4 Minus
3R 32079331 3R 24719128..24719281 170..17 770 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:02:47 has no hits.

BS07228.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:00 Download gff for BS07228.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 1..1125 17..1141 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:23 Download gff for BS07228.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 80..1206 14..1141 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:32 Download gff for BS07228.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 84..1207 17..1140 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:00 Download gff for BS07228.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 80..1206 14..1141 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:34 Download gff for BS07228.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 84..1207 17..1140 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:34 Download gff for BS07228.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24718031..24718262 909..1140 100 <- Minus
3R 24718321..24719058 171..908 100 <- Minus
3R 24719128..24719281 17..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:32 Download gff for BS07228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20544850..20545003 17..170 100   Minus
arm_3R 20543753..20543984 909..1140 100 <- Minus
arm_3R 20544043..20544780 171..908 100 <- Minus

BS07228.pep Sequence

Translation from 16 to 1140

> BS07228.pep
MTQKCETTNCGKDATLQCPTCLKLGIKGSFFCSQPCFKGFWKEHKAIHAL
AAGASNSAEQDGAYNPWPHFRFTGKLRPFPQTPKRTVPNAIQRPDYADHP
AGRSLSEEALRGTKIKVLDDEEIEGMRVAGRLGRECLDEGAKAVEVGITT
DELDRLVHEAAIERECYPSPLNYYNFPKSCCTSVNEVICHGIPDQRPLQD
GDLCNIDVTVYHRGFHGDLNETFFVGNVSEKHKKLVQVTHEALSKAIEFV
RPGEKYRDIGNVIQKYVAPHGFSVVRSYCGHGIHRVFHTAPNVPHYAKNS
AVGVMAPGHCFTIEPMISVGVQKAETWPDDWTAVTADGLYSAQFEQTLLV
NETGCEILTKRRENNGQPWFMDKM*

BS07228.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13630-PA 374 CG13630-PA 1..374 1..374 2048 100 Plus
CG5188-PA 317 CG5188-PA 30..315 73..360 628 43.5 Plus