Clone Sequence Records
BS07228.3prime Sequence
914 bp (805 high quality bases) assembled on 2006-01-06
> BS07228.3prime
ATGGTCTAGAAAGCTTTCACATCTTGTCCATGAACCACGGCTGTCCGTTG
TTCTCGCGACGCTTGGTGAGAATCTCGCATCCGGTTTCGTTGACCAGCAG
TGTCTGCTCAAACTGGGCGGAGTACAGGCCATCGGCGGTCACAGCAGTCC
AGTCATCTGGCCAGGTTTCAGCCTTCTGGACGCCAACGGAGATCATGGGC
TCGATGGTGAAGCAGTGGCCAGGGGCCATTACTCCTACGGCAGAGTTTTT
GGCATAGTGAGGCACATTGGGAGCTGTGTGGAAAACACGGTGAATGCCAT
GACCGCAATAGCTGCGCACCACGCTGAATCCATGTGGTGCCACATACTTT
TGGATCACGTTGCCAATATCGCGATACTTTTCACCCGGACGCACGAACTC
AATGGCCTTGCTGAGCGCCTCGTGGGTGACCTGCACCAGTTTCTTGTGCT
TCTCCGAGACATTGCCCACAAAGAAGGTCTCGTTGAGATCACCATGGAAG
CCGCGATGATAGACGGTCACATCGATGTTACATAGATCTCCATCCTGTAG
AGGACGCTGATCGGGGATGCCGTGGCAAATCACCTCGTTGACCGATGTGC
AACAGGACTTGGGGAAGTTGTAGTAGTTGAGGGGCGACGGATAGCACTCC
CGTTCGATGGCGGCCTCGTGGACCAAACGATCCAGTTCGTCGGTGGTGAT
GCCCACCTCCACGGCTTTGGCACCCTCATCCAAGCATTCTCGACCCAATC
TGCCGGCCACTCGCATGCCCTCGATCTCCTCGTCGTCCAGCACCTTAATC
TTGGTGCCCCGCAGTGCTTCCTCCGAGAGTGAACGTCCTGCTGGATGATC
GGCGTAATCTGGACGTTGTATGGCGTTCGGAACTGTTCGCTTGGGAGTCT
GTGGGAAACGGCGG
BS07228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13630-PA | 1125 | CG13630-RA | 235..1125 | 907..17 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13630-RA | 1301 | CG13630-RA | 311..1208 | 914..17 | 4460 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24718321..24718985 | 250..914 | 3295 | 99.7 | Plus |
3R | 32079331 | 3R | 24718030..24718275 | 17..262 | 1170 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:01:02 has no hits.
BS07228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:20 Download gff for
BS07228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-PA | 228..1125 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:00 Download gff for
BS07228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-PA | 228..1125 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:14 Download gff for
BS07228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-RA | 311..1208 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:13 Download gff for
BS07228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-RA | 311..1208 | 17..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:13 Download gff for
BS07228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24718030..24718262 | 17..249 | 100 | <- | Plus |
3R | 24718321..24718985 | 250..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:14 Download gff for
BS07228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20543752..20543984 | 17..249 | 100 | <- | Plus |
arm_3R | 20544043..20544707 | 250..914 | 99 | | Plus |
BS07228.5prime Sequence
892 bp (891 high quality bases) assembled on 2006-01-06
> BS07228.5prime
GAAGTTATCAGTCGACATGACTCAAAAGTGCGAGACAACCAACTGCGGCA
AGGATGCGACCCTGCAGTGTCCCACCTGCCTAAAGTTGGGCATCAAGGGC
TCATTTTTCTGCTCGCAGCCGTGCTTCAAAGGATTCTGGAAGGAGCACAA
GGCGATTCATGCTTTAGCAGCCGGTGCCTCGAACTCTGCCGAACAGGATG
GAGCCTACAATCCATGGCCACATTTCCGCTTCACCGGCAAGCTCCGCCCG
TTCCCACAGACTCCCAAGCGAACAGTTCCGAACGCCATACAACGTCCAGA
TTACGCCGATCATCCAGCAGGACGTTCACTCTCGGAGGAAGCACTGCGGG
GCACCAAGATTAAGGTGCTGGACGACGAGGAGATCGAGGGCATGCGAGTG
GCCGGCAGATTGGGTCGAGAATGCTTGGATGAGGGTGCCAAAGCCGTGGA
GGTGGGCATCACCACCGACGAACTGGATCGTTTGGTCCACGAGGCCGCCA
TCGAACGGGAGTGCTATCCGTCGCCCCTCAACTACTACAACTTCCCCAAG
TCCTGTTGCACATCGGTCAACGAGGTGATTTGCCACGGCATCCCCGATCA
GCGTCCTCTACAGGATGGAGATCTATGTAACATCGATGTGACCGTCTATC
ATCGCGGCTTCCATGGTGATCTCAACGAGACCTTCTTTGTGGGCAATGTC
TCGGAGAAGCACAAGAAACTGGTGCAGGTCACCCACGAGGCGCTCAGCAA
GGCCATTGAGTTCGTGCGTCCGGGTGAAAAGTATCGCGATATTGGCAACG
TGATCCAAAAGTATGTGGCACCACATGGATTCAGCGTGGTGCGCAGCTAT
TGCGGTCATGGCATTCACCCGTGTTTCCACACAGCTCCCAAT
BS07228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13630-PA | 1125 | CG13630-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13630-RA | 1301 | CG13630-RA | 84..959 | 17..892 | 4335 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24718337..24719061 | 892..168 | 3565 | 99.4 | Minus |
3R | 32079331 | 3R | 24719128..24719281 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:19:56 has no hits.
BS07228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:21 Download gff for
BS07228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:02 Download gff for
BS07228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:58:14 Download gff for
BS07228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-RA | 82..959 | 14..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:16 Download gff for
BS07228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-RA | 82..959 | 14..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:16 Download gff for
BS07228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24718337..24719058 | 171..892 | 99 | <- | Minus |
3R | 24719128..24719283 | 14..170 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:58:14 Download gff for
BS07228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20544059..20544780 | 171..892 | 99 | <- | Minus |
arm_3R | 20544850..20545005 | 14..170 | 99 | | Minus |
BS07228.complete Sequence
1157 bp (1157 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635775
> BS07228.complete
GAAGTTATCAGTCGACATGACTCAAAAGTGCGAGACAACCAACTGCGGCA
AGGATGCGACCCTGCAGTGTCCCACCTGCCTAAAGTTGGGCATCAAGGGC
TCATTTTTCTGCTCGCAGCCGTGCTTCAAAGGATTCTGGAAGGAGCACAA
GGCGATTCATGCTTTAGCAGCCGGTGCCTCGAACTCTGCCGAACAGGATG
GAGCCTACAATCCATGGCCACATTTCCGCTTCACCGGCAAGCTCCGCCCG
TTCCCACAGACTCCCAAGCGAACAGTTCCGAACGCCATACAACGTCCAGA
TTACGCCGATCATCCAGCAGGACGTTCACTCTCGGAGGAAGCACTGCGGG
GCACCAAGATTAAGGTGCTGGACGACGAGGAGATCGAGGGCATGCGAGTG
GCCGGCAGATTGGGTCGAGAATGCTTGGATGAGGGTGCCAAAGCCGTGGA
GGTGGGCATCACCACCGACGAACTGGATCGTTTGGTCCACGAGGCCGCCA
TCGAACGGGAGTGCTATCCGTCGCCCCTCAACTACTACAACTTCCCCAAG
TCCTGTTGCACATCGGTCAACGAGGTGATTTGCCACGGCATCCCCGATCA
GCGTCCTCTACAGGATGGAGATCTATGTAACATCGATGTGACCGTCTATC
ATCGCGGCTTCCATGGTGATCTCAACGAGACCTTCTTTGTGGGCAATGTC
TCGGAGAAGCACAAGAAACTGGTGCAGGTCACCCACGAGGCGCTCAGCAA
GGCCATTGAGTTCGTGCGTCCGGGTGAAAAGTATCGCGATATTGGCAACG
TGATCCAAAAGTATGTGGCACCACATGGATTCAGCGTGGTGCGCAGCTAT
TGCGGTCATGGCATTCACCGTGTTTTCCACACAGCTCCCAATGTGCCTCA
CTATGCCAAAAACTCTGCCGTAGGAGTAATGGCCCCTGGCCACTGCTTCA
CCATCGAGCCCATGATCTCCGTTGGCGTCCAGAAGGCTGAAACCTGGCCA
GATGACTGGACTGCTGTGACCGCCGATGGCCTGTACTCCGCCCAGTTTGA
GCAGACACTGCTGGTCAACGAAACCGGATGCGAGATTCTCACCAAGCGTC
GCGAGAACAACGGACAGCCGTGGTTCATGGACAAGATGTGAAAGCTTTCT
AGACCAT
BS07228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13630-RA | 1125 | CG13630-PA | 1..1125 | 17..1141 | 5625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13630-RA | 1301 | CG13630-RA | 84..1208 | 17..1141 | 5625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24718321..24719061 | 908..168 | 3705 | 100 | Minus |
3R | 32079331 | 3R | 24718030..24718275 | 1141..896 | 1170 | 98.4 | Minus |
3R | 32079331 | 3R | 24719128..24719281 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:47 has no hits.
BS07228.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:00 Download gff for
BS07228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-RA | 1..1125 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:23 Download gff for
BS07228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-RA | 80..1206 | 14..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:32 Download gff for
BS07228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-RA | 84..1207 | 17..1140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:00 Download gff for
BS07228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-RA | 80..1206 | 14..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:34 Download gff for
BS07228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13630-RA | 84..1207 | 17..1140 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:34 Download gff for
BS07228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24718031..24718262 | 909..1140 | 100 | <- | Minus |
3R | 24718321..24719058 | 171..908 | 100 | <- | Minus |
3R | 24719128..24719281 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:32 Download gff for
BS07228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20544850..20545003 | 17..170 | 100 | | Minus |
arm_3R | 20543753..20543984 | 909..1140 | 100 | <- | Minus |
arm_3R | 20544043..20544780 | 171..908 | 100 | <- | Minus |
BS07228.pep Sequence
Translation from 16 to 1140
> BS07228.pep
MTQKCETTNCGKDATLQCPTCLKLGIKGSFFCSQPCFKGFWKEHKAIHAL
AAGASNSAEQDGAYNPWPHFRFTGKLRPFPQTPKRTVPNAIQRPDYADHP
AGRSLSEEALRGTKIKVLDDEEIEGMRVAGRLGRECLDEGAKAVEVGITT
DELDRLVHEAAIERECYPSPLNYYNFPKSCCTSVNEVICHGIPDQRPLQD
GDLCNIDVTVYHRGFHGDLNETFFVGNVSEKHKKLVQVTHEALSKAIEFV
RPGEKYRDIGNVIQKYVAPHGFSVVRSYCGHGIHRVFHTAPNVPHYAKNS
AVGVMAPGHCFTIEPMISVGVQKAETWPDDWTAVTADGLYSAQFEQTLLV
NETGCEILTKRRENNGQPWFMDKM*
BS07228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13630-PA | 374 | CG13630-PA | 1..374 | 1..374 | 2048 | 100 | Plus |
CG5188-PA | 317 | CG5188-PA | 30..315 | 73..360 | 628 | 43.5 | Plus |