Clone Sequence Records
BS07229.3prime Sequence
948 bp (832 high quality bases) assembled on 2006-01-06
> BS07229.3prime
ATGGTCTAGAAAGCTTCTATTTCTTCTCCTGCTCCTCGAGAAACTGCTGC
AGCAGTGCGCCATCAATGGGAATGGTTAGCTGTTCGGAGCCATCAACGCT
CCGTTTCGATTTGACCAGCTTGTGGTCGAGGAACTCGGTGAGCTGGGCAC
GCAGTGCCAGATCTGAGCTGACCAAAAATGCTTCGCGACAACTCGAATAG
AGATCCCTGAACGGCATGCCCTGGTATGTGGCATTGCCCTTGTTCTTCAA
TTGATACTTAACAATCAGCATGTAAATGCCACGCGAATTGGTCGTTAGCG
ATGAGAAGACACTGCGCATCGAGGAGAGGGCCAATTCGCCGGAATTCTGC
ACCAGCAGCGAGTTCTCGAACGCAGTTTCGTTCGTATATGGCAGCATTGT
TGTGCAGTCCCACCACGAGAAGTTGAAGCTGCACAGCTTTCCCTGGTCCC
ACAAAAGTGGGGTATTTATGTGATCAATGGAGGCCAGTAGATGAATGTTC
GGTATGCGCGCCAGGCGCGAAAGAATCGCCTGTGCCTTCACATTGCGAAG
CATGGCTCCATCCAGATTATGGACGATTAAGAACAAATGTGTTTCCGGTA
TCAGTGCGAACTCCTCCTCGATCATATCCACTGCTTCATGTGGATTAGCC
GGACTAATGCCCGCATCTAATATGTCGCTTGTGATGCTATCCAGCATATC
CTTGATGGTCAGACTGGGAAAGAAGCCATTCACCACCAATACCGTTTGCT
TATGCAAAACTTCCCGATGGAATGACTGCAGCAGCTGGTGCTTGGAGCCC
AATCCATATAGAAGTATATTGAAGCCTTCGTTCAGAATACACATCCACTT
GGGAAAGTACGATCGATACTCCTCCATAATGGCATTAATAGAACCCTCAT
GCTCCGCCGATGTCTTGATTTCCGACAGCAAACTGAAAACACGATCGG
BS07229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3041-PA | 1857 | Orc2-RA | 926..1857 | 948..17 | 4635 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc2-RA | 1995 | CG3041-RA | 991..1922 | 948..17 | 4645 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13966001..13966493 | 948..456 | 2465 | 100 | Minus |
| 3R | 32079331 | 3R | 13966566..13967002 | 453..17 | 2185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 12:13:09 has no hits.
BS07229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:22 Download gff for
BS07229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-PA | 926..1857 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:03 Download gff for
BS07229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3041-PA | 926..1857 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:40 Download gff for
BS07229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 991..1928 | 9..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:31 Download gff for
BS07229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 991..1928 | 9..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:31 Download gff for
BS07229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13966001..13966495 | 454..948 | 99 | -> | Minus |
| 3R | 13966566..13967008 | 9..453 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:40 Download gff for
BS07229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9791723..9792217 | 454..948 | 99 | -> | Minus |
| arm_3R | 9792288..9792730 | 9..453 | 99 | | Minus |
BS07229.5prime Sequence
907 bp (827 high quality bases) assembled on 2006-01-06
> BS07229.5prime
GAAGTTATCAGTCGACATGAGTGCCAGCAACAAAGGCGGTTACAAGACGC
CGCGGAAGGAGAACCTCATGTCCATTGAGAACCTCACCAATTCGGAGGAG
GAATCCGAGGACTTGAACACGGCAATGGTTGGGAATGCAGTGGAATCTCA
GCCCAAGGTCACCAGTCGGCGTTCCACCCGACGTCCAAGTCCCACCAAGA
AATACCAGGCGTACCAGAAGGAAAGCAATGGAAAAGGCCAGGAAGAGCGA
ATTGTTGTGAACTATGTGGAAATGTCCGATGAACGGAGCAGCGATGCGGA
GGATCAGGAAGAAGAAGAAAGCATCGAGGAGTCGGAAAATGCTGCCCGTC
CCGCTGCCAAGGATCTGCATCTCATCCAATCCGAGTACAATGTGGCCGGC
ACCAGCATGTTTGGCTTCAATACGCCCAAGAAACGCGATGCCATGGCACT
GGCCGCCCTAAATGCCACGCCCTGCACGCCCAAGACCCCAAAAACGCCGC
GTTTGGGTGTCAAGACGCCGGATACGAAGCGCAAGAAGTCCATGGATCAG
CCAAAGACTCCCGCCCATGTGCGCACCCGCGTCAAGAAGCAGATTGCCAA
AATAGTGGCCGACTCAGATGAGGATTTTTCTGGAGATGAAAGCGATTTCC
GGCCCAGTGACGAGGAATCCTCCTCCAGCAGCAGTAGCAGCGATGCTGGC
AACTCCTCTGACAACGACGCCGCCGATGATGAGCCCAAAACGCCCAGTAG
AGCCCGCCGTGCCATTGTAGTCCCCGTTCTGCCGAAAACTCCATCGGCAG
CCCGCCTGCGACAATCGGCGAGGGCGAAAAATCGAATGAGTTTGTGCCCG
AGAGCGATGGTTACTTTCACTCGCATGCCAGCAGCAAGATCCTCACTTCG
GATCACA
BS07229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3041-PA | 1857 | Orc2-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
| CG3041-PA | 1857 | Orc2-RA | 812..892 | 827..907 | 405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc2-RA | 1995 | CG3041-RA | 65..957 | 16..907 | 4440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13965007..13965581 | 16..590 | 2875 | 100 | Plus |
| 3R | 32079331 | 3R | 13965650..13965967 | 591..907 | 1540 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:14:27 has no hits.
BS07229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:23 Download gff for
BS07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:05 Download gff for
BS07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3041-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:57:12 Download gff for
BS07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 60..956 | 10..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:03:30 Download gff for
BS07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 60..956 | 10..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:03:30 Download gff for
BS07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13965002..13965581 | 10..590 | 99 | -> | Plus |
| 3R | 13965650..13965966 | 591..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:57:12 Download gff for
BS07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9790724..9791303 | 10..590 | 99 | -> | Plus |
| arm_3R | 9791372..9791688 | 591..906 | 99 | | Plus |
BS07229.complete Sequence
1889 bp assembled on 2008-01-02
GenBank Submission: FJ635776
> BS07229.complete
GAAGTTATCAGTCGACATGAGTGCCAGCAACAAAGGCGGTTACAAGACGC
CGCGGAAGGAGAACCTCATGTCCATTGAGAACCTCACCAATTCGGAGGAG
GAATCCGAGGACTTGAACACGGCAATGGTTGGGAATGCAGTGGAATCTCA
GCCCAAGGTCACCAGTCGGCGTTCCACCCGACGTCCAAGTCCCACCAAGA
AATACCAGGCGTACCAGAAGGAAAGCAATGGAAAAGGCCAGGAAGAGCGA
ATTGTTGTGAACTATGTGGAAATGTCCGATGAACGGAGCAGCGATGCGGA
GGATCAGGAAGAAGAAGAAAGCATCGAGGAGTCGGAAAATGCTGCCCGTC
CCGCTGCCAAGGATCTGCATCTCATCCAATCCGAGTACAATGTGGCCGGC
ACCAGCATGTTTGGCTTCAATACGCCCAAGAAACGCGATGCCATGGCACT
GGCCGCCCTAAATGCCACGCCCTGCACGCCCAAGACCCCAAAAACGCCGC
GTTTGGGTGTCAAGACGCCGGATACGAAGCGCAAGAAGTCCATGGATCAG
CCAAAGACTCCCGCCCATGTGCGCACCCGCGTCAAGAAGCAGATTGCCAA
AATAGTGGCCGACTCAGATGAGGATTTTTCTGGAGATGAAAGCGATTTCC
GGCCCAGTGACGAGGAATCCTCCTCCAGCAGCAGTAGCAGCGATGCTGGC
AACTCCTCTGACAACGACGCCGCCGATGATGAGCCCAAAACGCCCAGTAG
AGCCCGCCGTGCCATTGTAGTCCCCGTTCTGCCGAAAACTCCATCGGCAG
CCCGCCTGCGACAATCGGCGAGGGCGAAAAAATCGAATGAGTTTGTGCCC
GAGAGCGATGGTTACTTTCACTCGCATGCCAGCAGCAAGATCCTCACTTC
GGATCACACCTTGGATCGCCTAAAGAATCCTCGCCTGGCCGCCGATCGTG
TTTTCAGTTTGCTGTCGGAAATCAAGACATCGGCGGAGCATGAGGGTTCT
ATTAATGCCATTATGGAGGAGTATCGATCGTACTTTCCCAAGTGGATGTG
TATTCTGAACGAAGGCTTCAATATACTTCTATATGGATTGGGCTCCAAGC
ACCAGCTGCTGCAGTCATTCCATCGGGAAGTTTTGCATAAGCAAACGGTA
TTGGTGGTGAATGGCTTCTTTCCCAGTCTGACCATCAAGGATATGCTGGA
TAGCATCACAAGCGACATATTAGATGCGGGCATTAGTCCGGCTAATCCAC
ATGAAGCAGTGGATATGATCGAGGAGGAGTTCGCACTGATACCGGAAACA
CATTTGTTCTTAATCGTCCATAATCTGGATGGAGCCATGCTTCGCAATGT
GAAGGCACAGGCGATTCTTTCGCGCCTGGCGCGCATACCGAACATTCATC
TACTGGCCTCCATTGATCACATAAATACCCCACTTTTGTGGGACCAGGGA
AAGCTGTGCAGCTTCAACTTCTCGTGGTGGGACTGCACAACAATGCTGCC
ATATACGAACGAAACTGCGTTCGAGAACTCGCTGCTGGTGCAGAATTCCG
GCGAATTGGCCCTCTCCTCGATGCGCAGTGTCTTCTCATCGCTAACGACC
AATTCGCGTGGCATTTACATGCTGATTGTTAAGTATCAATTGAAGAACAA
GGGCAATGCCACATACCAGGGCATGCCGTTCAGGGATCTCTATTCGAGTT
GTCGCGAAGCATTTTTGGTCAGCTCAGATCTGGCACTGCGTGCCCAGCTC
ACCGAGTTCCTCGACCACAAGCTGGTCAAATCGAAACGGAGCGTTGATGG
CTCCGAACAGCTAACCATTCCCATTGATGGCGCACTGCTGCAGCAGTTTC
TCGAGGAGCAGGAGAAGAAATAGAAGCTTTCTAGACCAT
BS07229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc2-RA | 1857 | CG3041-PA | 1..1857 | 17..1873 | 9270 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc2-RA | 1995 | CG3041-RA | 65..1922 | 16..1873 | 9275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13965650..13966493 | 591..1434 | 4220 | 100 | Plus |
| 3R | 32079331 | 3R | 13965007..13965581 | 16..590 | 2875 | 100 | Plus |
| 3R | 32079331 | 3R | 13966566..13967002 | 1437..1873 | 2185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:57 has no hits.
BS07229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:00 Download gff for
BS07229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 1..1857 | 17..1873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:17 Download gff for
BS07229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 34..1884 | 17..1867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:14 Download gff for
BS07229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 66..1916 | 17..1867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:00 Download gff for
BS07229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 28..1896 | 10..1881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:39 Download gff for
BS07229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 66..1916 | 17..1867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:39 Download gff for
BS07229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13965008..13965581 | 17..590 | 100 | -> | Plus |
| 3R | 13965650..13966495 | 591..1436 | 99 | -> | Plus |
| 3R | 13966566..13966996 | 1437..1867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:14 Download gff for
BS07229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9790730..9791303 | 17..590 | 100 | -> | Plus |
| arm_3R | 9791372..9792217 | 591..1436 | 99 | -> | Plus |
| arm_3R | 9792288..9792718 | 1437..1867 | 100 | | Plus |
BS07229.pep Sequence
Translation from 16 to 1872
> BS07229.pep
MSASNKGGYKTPRKENLMSIENLTNSEEESEDLNTAMVGNAVESQPKVTS
RRSTRRPSPTKKYQAYQKESNGKGQEERIVVNYVEMSDERSSDAEDQEEE
ESIEESENAARPAAKDLHLIQSEYNVAGTSMFGFNTPKKRDAMALAALNA
TPCTPKTPKTPRLGVKTPDTKRKKSMDQPKTPAHVRTRVKKQIAKIVADS
DEDFSGDESDFRPSDEESSSSSSSSDAGNSSDNDAADDEPKTPSRARRAI
VVPVLPKTPSAARLRQSARAKKSNEFVPESDGYFHSHASSKILTSDHTLD
RLKNPRLAADRVFSLLSEIKTSAEHEGSINAIMEEYRSYFPKWMCILNEG
FNILLYGLGSKHQLLQSFHREVLHKQTVLVVNGFFPSLTIKDMLDSITSD
ILDAGISPANPHEAVDMIEEEFALIPETHLFLIVHNLDGAMLRNVKAQAI
LSRLARIPNIHLLASIDHINTPLLWDQGKLCSFNFSWWDCTTMLPYTNET
AFENSLLVQNSGELALSSMRSVFSSLTTNSRGIYMLIVKYQLKNKGNATY
QGMPFRDLYSSCREAFLVSSDLALRAQLTEFLDHKLVKSKRSVDGSEQLT
IPIDGALLQQFLEEQEKK*
BS07229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc2-PA | 618 | CG3041-PA | 1..618 | 1..618 | 3150 | 100 | Plus |
