Clone BS07230 Report

Search the DGRC for BS07230

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptOdc1-RA
Protein status:BS07230.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07230.3prime Sequence

922 bp (841 high quality bases) assembled on 2006-01-06

> BS07230.3prime
ATGGTCTAGAAAGCTTTCATATAGCTTGGAAGTACAGGGTCTTGGGGACT
TCGAATCCATTGAATGCACTGGCAATGGGCATGGTGTAGGCGCCCATGTT
TCGGAATCCCAAAAGATCGCCTCGGTTTAGGTTGGGCAAGTGCAGGTCCT
CCGAAATCTTATCTAGGGCGTCACAACTTGGCCCCCAAATCAAGGACTTT
AGGTGTGGCAAAGATTCTGCATTGTCCAGATAATGCTCTGCAATCACCAC
TTGATGGTCGTACAGAATGCAGTTGAAGGACCCATAGACGCCGTCATTCA
GATAGTACATTACGGTGTCCAGTTTGCCAGCTTCGTTCCTGATCTCCCGC
TTGGCGTGGATCTTGCAAACCAAGGTGCAGGCTGCCGCCACAAAGAAGCG
TCCTGGTTCGGCGATTATGTGAACGCGTTCGTCGGGAAAATGACGCTGCA
CCGAGGTATTCACACTTTCGGCTATCTTCTCAAACTTTACGTCATCGCTG
CCAGGGAACCCACCGCCAATGTCCAGAAAGTCCATGTCATAGCCCAGTAG
TGCGCCGAACTTGAAGAGGTTCTTGGCCTTCTTGATGGCCCGATCGTAGG
CCTGCAGCTCGCTGCATCCGGAGCCGACGTGGAAACTGGTGCCGGTCACC
TTCAGCTCCAAGGATTTGGCCAGCAGCATTAGGGCCGCTGCATCCACATC
CGCATCACAGCCAAATTTGTCGCCCAGTGGGCACTGTGCCTCCTTGGCCT
CGCTCTTGAATCTCACGATCAGGTTGGAGTTGGGATAGTGCGTGTGCAGC
TTGTATACCTCGAACTCATTGTCCACCGTTCCGTTGGACACCTGGTGCTC
CTTGGCGTACTCCAGATGGCTGACAGGGCGGCAGGGATTGGCGAAGATGA
TACGCTCCGGCGAGACATCGAA

BS07230.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8721-PA 1185 Odc1-RA 280..1185 922..17 4530 100 Minus
CG8719-PA 1182 Odc2-RA 548..626 654..576 245 92.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
Odc1-RA 1253 CG8721-RA 307..1212 922..17 4530 100 Minus
Odc2-RA 1268 CG8719-RA 307..1179 913..38 1100 75.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8005624..8005926 778..476 1500 99.7 Minus
2R 25286936 2R 8005982..8006233 477..226 1260 100 Minus
2R 25286936 2R 8005425..8005573 922..774 745 100 Minus
2R 25286936 2R 8006489..8006631 159..17 715 100 Minus
2R 25286936 2R 8007993..8008218 778..553 530 82.3 Minus
2R 25286936 2R 8006362..8006431 227..158 350 100 Minus
2R 25286936 2R 8007806..8007945 913..774 280 80 Minus
2R 25286936 2R 8008418..8008535 411..294 245 80.5 Minus
2R 25286936 2R 8008862..8008973 149..38 215 79.5 Minus
Blast to na_te.dros performed 2015-02-03 12:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 579..633 92..39 110 71.4 Minus

BS07230.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:24 Download gff for BS07230.3prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-PA 282..1185 17..920 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:06 Download gff for BS07230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8721-PA 282..1185 17..920 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:38 Download gff for BS07230.3prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 307..1214 12..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:29 Download gff for BS07230.3prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 307..1214 12..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:29 Download gff for BS07230.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8005425..8005573 774..922 100 -> Minus
2R 8005629..8005926 476..773 100 -> Minus
2R 8005984..8006232 227..475 100 -> Minus
2R 8006363..8006431 158..226 100 -> Minus
2R 8006491..8006633 12..157 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:38 Download gff for BS07230.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3893489..3893737 227..475 100 -> Minus
arm_2R 3893868..3893936 158..226 100 -> Minus
arm_2R 3892930..3893078 774..922 100 -> Minus
arm_2R 3893134..3893431 476..773 100 -> Minus
arm_2R 3893996..3894138 12..157 97   Minus

BS07230.5prime Sequence

975 bp (746 high quality bases) assembled on 2006-01-06

> BS07230.5prime
GAAGTTATCAGTCGACATGGCGGCCGCTACCCCTGAAATCCAGTTCTACG
AACGCGAGCTCAACATCCGCCGGGTGATCGAGGAGTGCGACCTGCAGCGC
CTGGACCAGGCCCTCAACATCTGCGACCTGTCTAGCGTGGAGCGTAAGCT
GCGCCTCTGGCAGAAGCTCCTGCCCAGGATCAAGCCCTTCTACGCCGTCA
AGTGCAATGACGATCCAATGGTGGTCAGGCTGCTGGCCCAGCTGGGAGCC
GGATTCGACTGCGCCTCCAAAAACGAAGTCAAGCTGGTCTTGGGCTTCGA
TGTCTCGCCGGAGCGTATCATCTTCGCCAATCCCTGCCGCCCTGTCAGCC
ATCTGGAGTACGCCAAGGAGCACCAGGTGTCCAACGGAACGGTGGACAAT
GAGTTCGAGGTATACAAGCTGCACACGCACTATCCCAACTCCAACCTGAT
CGTGAGATTCAAGAGCGAGGCCAAGGAGGCACAGTGCCCACTGGGCGACA
AATTTGGCTGTGATGCGGATGTGGATGCAGCGGCCCTAATGCTGCTGGCC
AAATCCTTGGAGCTGAAGGTGACCGGCACCAGTTTCCACGTCGGCTCCGG
ATGCAGCGAGCTGCAGGCCTACGATCGGGCCATCAAGAAGGCCAAGAACC
TCTTCAAGTTCGGCGCACTACTGGGCTATGACATGGACTTTCTGGACATT
GGCGGTGGGTTCCCTGGCAGCGATGACGTANAGTTTGAGAAGATAGCCGA
AAGTGTGAATACCTCGGTGCAGCGTCATTTTCCCGACGAACGCGTTCACA
TAATCGCCGAACCAGGACGCTTCTTTGTGGCGGCAGCCTGCACCTTGGTT
TGCAAGATCCACGCCAAGCGGGAGATCAGGAACGAAGCTGGCAAACTGGA
CACCCGTATGTACTATCTGAATGACNGCGTCTATGGGTCTTCAACTGCAT
TCTGTACGACCATCAAGTGGTGATT

BS07230.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8721-PA 1185 Odc1-RA 1..888 17..904 4421 99.8 Plus
CG8719-PA 1182 Odc2-RA 548..626 564..642 245 92.4 Plus
CG8721-PA 1185 Odc1-RA 924..960 939..975 185 100 Plus
CG8719-PA 1182 Odc2-RA 85..164 101..180 150 87.5 Plus
CG8721-PA 1185 Odc1-RA 892..923 908..939 141 96.8 Plus
CG8719-PA 1182 Odc2-RA 235..261 251..277 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Odc1-RA 1253 CG8721-RA 24..987 13..975 4713 99.4 Plus
Odc2-RA 1268 CG8719-RA 58..926 56..924 1424 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8005624..8005926 440..742 1489 99.3 Plus
2R 25286936 2R 8004847..8005122 13..288 1365 99.6 Plus
2R 25286936 2R 8005982..8006217 741..975 1074 97.9 Plus
2R 25286936 2R 8005415..8005573 286..444 795 100 Plus
2R 25286936 2R 8007993..8008218 440..665 530 82.3 Plus
2R 25286936 2R 8007303..8007535 56..288 520 81.5 Plus
2R 25286936 2R 8007806..8007945 305..444 280 80 Plus
2R 25286936 2R 8008418..8008535 807..924 230 79.7 Plus
Blast to na_te.dros performed on 2015-02-11 09:19:41 has no hits.

BS07230.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:25 Download gff for BS07230.5prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-PA 1..960 17..975 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:07 Download gff for BS07230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8721-PA 1..960 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:06:48 Download gff for BS07230.5prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 17..987 7..975 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:44 Download gff for BS07230.5prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 17..987 7..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:44 Download gff for BS07230.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8005416..8005573 287..444 100 -> Plus
2R 8004840..8005120 7..286 98 -> Plus
2R 8005629..8005926 445..742 99 -> Plus
2R 8005984..8006217 743..975 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:06:48 Download gff for BS07230.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3892345..3892625 7..286 98 -> Plus
arm_2R 3892921..3893078 287..444 100 -> Plus
arm_2R 3893134..3893431 445..742 99 -> Plus
arm_2R 3893489..3893722 743..975 98   Plus

BS07230.complete Sequence

1217 bp (1217 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635777

> BS07230.complete
GAAGTTATCAGTCGACATGGCGGCCGCTACCCCTGAAATCCAGTTCTACG
AACGCGAGCTCAACATCCGCCGGGTGATCGAGGAGTGCGACCTGCAGCGC
CTGGACCAGGCCCTCAACATCTGCGACCTGTCTAGCGTGGAGCGTAAGCT
GCGCCTCTGGCAGAAGCTCCTGCCCAGGATCAAGCCCTTCTACGCCGTCA
AGTGCAATGACGATCCAATGGTGGTCAGGCTGCTGGCCCAGCTGGGAGCC
GGATTCGACTGCGCCTCCAAAAACGAAGTCAAGCTGGTCTTGGGCTTCGA
TGTCTCGCCGGAGCGTATCATCTTCGCCAATCCCTGCCGCCCTGTCAGCC
ATCTGGAGTACGCCAAGGAGCACCAGGTGTCCAACGGAACGGTGGACAAT
GAGTTCGAGGTATACAAGCTGCACACGCACTATCCCAACTCCAACCTGAT
CGTGAGATTCAAGAGCGAGGCCAAGGAGGCACAGTGCCCACTGGGCGACA
AATTTGGCTGTGATGCGGATGTGGATGCAGCGGCCCTAATGCTGCTGGCC
AAATCCTTGGAGCTGAAGGTGACCGGCACCAGTTTCCACGTCGGCTCCGG
ATGCAGCGAGCTGCAGGCCTACGATCGGGCCATCAAGAAGGCCAAGAACC
TCTTCAAGTTCGGCGCACTACTGGGCTATGACATGGACTTTCTGGACATT
GGCGGTGGGTTCCCTGGCAGCGATGACGTAAAGTTTGAGAAGATAGCCGA
AAGTGTGAATACCTCGGTGCAGCGTCATTTTCCCGACGAACGCGTTCACA
TAATCGCCGAACCAGGACGCTTCTTTGTGGCGGCAGCCTGCACCTTGGTT
TGCAAGATCCACGCCAAGCGGGAGATCAGGAACGAAGCTGGCAAACTGGA
CACCGTAATGTACTATCTGAATGACGGCGTCTATGGGTCCTTCAACTGCA
TTCTGTACGACCATCAAGTGGTGATTGCAGAGCATTATCTGGACAATGCA
GAATCTTTGCCACACCTAAAGTCCTTGATTTGGGGGCCAAGTTGTGACGC
CCTAGATAAGATTTCGGAGGACCTGCACTTGCCCAACCTAAACCGAGGCG
ATCTTTTGGGATTCCGAAACATGGGCGCCTACACCATGCCCATTGCCAGT
GCATTCAATGGATTCGAAGTCCCCAAGACCCTGTACTTCCAAGCTATATG
AAAGCTTTCTAGACCAT

BS07230.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Odc1-RA 1185 CG8721-PA 1..1185 17..1201 5925 100 Plus
Odc2-RA 1182 CG8719-PA 40..1161 56..1180 1570 76.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Odc1-RA 1253 CG8721-RA 24..1212 13..1201 5930 99.9 Plus
Odc2-RA 1268 CG8719-RA 58..1179 56..1180 1570 76.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8005624..8005926 440..742 1500 99.7 Plus
2R 25286936 2R 8004847..8005122 13..288 1365 99.6 Plus
2R 25286936 2R 8005982..8006233 741..992 1260 100 Plus
2R 25286936 2R 8005415..8005573 286..444 795 100 Plus
2R 25286936 2R 8006489..8006631 1059..1201 715 100 Plus
2R 25286936 2R 8007993..8008218 440..665 530 82.3 Plus
2R 25286936 2R 8007303..8007535 56..288 520 81.5 Plus
2R 25286936 2R 8006362..8006431 991..1060 350 100 Plus
2R 25286936 2R 8007806..8007945 305..444 280 80 Plus
2R 25286936 2R 8008418..8008535 807..924 245 80.5 Plus
2R 25286936 2R 8008862..8008973 1069..1180 215 79.5 Plus
Blast to na_te.dros performed 2014-11-27 14:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 579..633 1126..1179 110 71.4 Plus

BS07230.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:42 Download gff for BS07230.complete
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 1..1185 17..1201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:00 Download gff for BS07230.complete
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 38..1235 7..1206 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:12 Download gff for BS07230.complete
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 28..1211 17..1200 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:42 Download gff for BS07230.complete
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 38..1235 7..1206 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:31 Download gff for BS07230.complete
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 28..1211 17..1200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:31 Download gff for BS07230.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8005984..8006232 743..991 100 -> Plus
2R 8006363..8006431 992..1060 100 -> Plus
2R 8006491..8006630 1061..1200 100   Plus
2R 8005416..8005573 287..444 100 -> Plus
2R 8005629..8005926 445..742 100 -> Plus
2R 8004851..8005120 17..286 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:12 Download gff for BS07230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3892356..3892625 17..286 100 -> Plus
arm_2R 3892921..3893078 287..444 100 -> Plus
arm_2R 3893134..3893431 445..742 100 -> Plus
arm_2R 3893489..3893737 743..991 100 -> Plus
arm_2R 3893868..3893936 992..1060 100 -> Plus
arm_2R 3893996..3894135 1061..1200 100   Plus

BS07230.pep Sequence

Translation from 16 to 1200

> BS07230.pep
MAAATPEIQFYERELNIRRVIEECDLQRLDQALNICDLSSVERKLRLWQK
LLPRIKPFYAVKCNDDPMVVRLLAQLGAGFDCASKNEVKLVLGFDVSPER
IIFANPCRPVSHLEYAKEHQVSNGTVDNEFEVYKLHTHYPNSNLIVRFKS
EAKEAQCPLGDKFGCDADVDAAALMLLAKSLELKVTGTSFHVGSGCSELQ
AYDRAIKKAKNLFKFGALLGYDMDFLDIGGGFPGSDDVKFEKIAESVNTS
VQRHFPDERVHIIAEPGRFFVAAACTLVCKIHAKREIRNEAGKLDTVMYY
LNDGVYGSFNCILYDHQVVIAEHYLDNAESLPHLKSLIWGPSCDALDKIS
EDLHLPNLNRGDLLGFRNMGAYTMPIASAFNGFEVPKTLYFQAI*

BS07230.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Odc1-PA 394 CG8721-PA 1..394 1..394 2073 100 Plus
Odc2-PA 393 CG8719-PA 8..392 8..393 1545 74.1 Plus