Clone Sequence Records
BS07230.3prime Sequence
922 bp (841 high quality bases) assembled on 2006-01-06
> BS07230.3prime
ATGGTCTAGAAAGCTTTCATATAGCTTGGAAGTACAGGGTCTTGGGGACT
TCGAATCCATTGAATGCACTGGCAATGGGCATGGTGTAGGCGCCCATGTT
TCGGAATCCCAAAAGATCGCCTCGGTTTAGGTTGGGCAAGTGCAGGTCCT
CCGAAATCTTATCTAGGGCGTCACAACTTGGCCCCCAAATCAAGGACTTT
AGGTGTGGCAAAGATTCTGCATTGTCCAGATAATGCTCTGCAATCACCAC
TTGATGGTCGTACAGAATGCAGTTGAAGGACCCATAGACGCCGTCATTCA
GATAGTACATTACGGTGTCCAGTTTGCCAGCTTCGTTCCTGATCTCCCGC
TTGGCGTGGATCTTGCAAACCAAGGTGCAGGCTGCCGCCACAAAGAAGCG
TCCTGGTTCGGCGATTATGTGAACGCGTTCGTCGGGAAAATGACGCTGCA
CCGAGGTATTCACACTTTCGGCTATCTTCTCAAACTTTACGTCATCGCTG
CCAGGGAACCCACCGCCAATGTCCAGAAAGTCCATGTCATAGCCCAGTAG
TGCGCCGAACTTGAAGAGGTTCTTGGCCTTCTTGATGGCCCGATCGTAGG
CCTGCAGCTCGCTGCATCCGGAGCCGACGTGGAAACTGGTGCCGGTCACC
TTCAGCTCCAAGGATTTGGCCAGCAGCATTAGGGCCGCTGCATCCACATC
CGCATCACAGCCAAATTTGTCGCCCAGTGGGCACTGTGCCTCCTTGGCCT
CGCTCTTGAATCTCACGATCAGGTTGGAGTTGGGATAGTGCGTGTGCAGC
TTGTATACCTCGAACTCATTGTCCACCGTTCCGTTGGACACCTGGTGCTC
CTTGGCGTACTCCAGATGGCTGACAGGGCGGCAGGGATTGGCGAAGATGA
TACGCTCCGGCGAGACATCGAA
BS07230.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8721-PA | 1185 | Odc1-RA | 280..1185 | 922..17 | 4530 | 100 | Minus |
CG8719-PA | 1182 | Odc2-RA | 548..626 | 654..576 | 245 | 92.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Odc1-RA | 1253 | CG8721-RA | 307..1212 | 922..17 | 4530 | 100 | Minus |
Odc2-RA | 1268 | CG8719-RA | 307..1179 | 913..38 | 1100 | 75.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8005624..8005926 | 778..476 | 1500 | 99.7 | Minus |
2R | 25286936 | 2R | 8005982..8006233 | 477..226 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 8005425..8005573 | 922..774 | 745 | 100 | Minus |
2R | 25286936 | 2R | 8006489..8006631 | 159..17 | 715 | 100 | Minus |
2R | 25286936 | 2R | 8007993..8008218 | 778..553 | 530 | 82.3 | Minus |
2R | 25286936 | 2R | 8006362..8006431 | 227..158 | 350 | 100 | Minus |
2R | 25286936 | 2R | 8007806..8007945 | 913..774 | 280 | 80 | Minus |
2R | 25286936 | 2R | 8008418..8008535 | 411..294 | 245 | 80.5 | Minus |
2R | 25286936 | 2R | 8008862..8008973 | 149..38 | 215 | 79.5 | Minus |
Blast to na_te.dros performed 2015-02-03 12:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 579..633 | 92..39 | 110 | 71.4 | Minus |
BS07230.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:24 Download gff for
BS07230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-PA | 282..1185 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:06 Download gff for
BS07230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8721-PA | 282..1185 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:38 Download gff for
BS07230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-RA | 307..1214 | 12..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:29 Download gff for
BS07230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-RA | 307..1214 | 12..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:29 Download gff for
BS07230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8005425..8005573 | 774..922 | 100 | -> | Minus |
2R | 8005629..8005926 | 476..773 | 100 | -> | Minus |
2R | 8005984..8006232 | 227..475 | 100 | -> | Minus |
2R | 8006363..8006431 | 158..226 | 100 | -> | Minus |
2R | 8006491..8006633 | 12..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:38 Download gff for
BS07230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3893489..3893737 | 227..475 | 100 | -> | Minus |
arm_2R | 3893868..3893936 | 158..226 | 100 | -> | Minus |
arm_2R | 3892930..3893078 | 774..922 | 100 | -> | Minus |
arm_2R | 3893134..3893431 | 476..773 | 100 | -> | Minus |
arm_2R | 3893996..3894138 | 12..157 | 97 | | Minus |
BS07230.5prime Sequence
975 bp (746 high quality bases) assembled on 2006-01-06
> BS07230.5prime
GAAGTTATCAGTCGACATGGCGGCCGCTACCCCTGAAATCCAGTTCTACG
AACGCGAGCTCAACATCCGCCGGGTGATCGAGGAGTGCGACCTGCAGCGC
CTGGACCAGGCCCTCAACATCTGCGACCTGTCTAGCGTGGAGCGTAAGCT
GCGCCTCTGGCAGAAGCTCCTGCCCAGGATCAAGCCCTTCTACGCCGTCA
AGTGCAATGACGATCCAATGGTGGTCAGGCTGCTGGCCCAGCTGGGAGCC
GGATTCGACTGCGCCTCCAAAAACGAAGTCAAGCTGGTCTTGGGCTTCGA
TGTCTCGCCGGAGCGTATCATCTTCGCCAATCCCTGCCGCCCTGTCAGCC
ATCTGGAGTACGCCAAGGAGCACCAGGTGTCCAACGGAACGGTGGACAAT
GAGTTCGAGGTATACAAGCTGCACACGCACTATCCCAACTCCAACCTGAT
CGTGAGATTCAAGAGCGAGGCCAAGGAGGCACAGTGCCCACTGGGCGACA
AATTTGGCTGTGATGCGGATGTGGATGCAGCGGCCCTAATGCTGCTGGCC
AAATCCTTGGAGCTGAAGGTGACCGGCACCAGTTTCCACGTCGGCTCCGG
ATGCAGCGAGCTGCAGGCCTACGATCGGGCCATCAAGAAGGCCAAGAACC
TCTTCAAGTTCGGCGCACTACTGGGCTATGACATGGACTTTCTGGACATT
GGCGGTGGGTTCCCTGGCAGCGATGACGTANAGTTTGAGAAGATAGCCGA
AAGTGTGAATACCTCGGTGCAGCGTCATTTTCCCGACGAACGCGTTCACA
TAATCGCCGAACCAGGACGCTTCTTTGTGGCGGCAGCCTGCACCTTGGTT
TGCAAGATCCACGCCAAGCGGGAGATCAGGAACGAAGCTGGCAAACTGGA
CACCCGTATGTACTATCTGAATGACNGCGTCTATGGGTCTTCAACTGCAT
TCTGTACGACCATCAAGTGGTGATT
BS07230.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8721-PA | 1185 | Odc1-RA | 1..888 | 17..904 | 4421 | 99.8 | Plus |
CG8719-PA | 1182 | Odc2-RA | 548..626 | 564..642 | 245 | 92.4 | Plus |
CG8721-PA | 1185 | Odc1-RA | 924..960 | 939..975 | 185 | 100 | Plus |
CG8719-PA | 1182 | Odc2-RA | 85..164 | 101..180 | 150 | 87.5 | Plus |
CG8721-PA | 1185 | Odc1-RA | 892..923 | 908..939 | 141 | 96.8 | Plus |
CG8719-PA | 1182 | Odc2-RA | 235..261 | 251..277 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Odc1-RA | 1253 | CG8721-RA | 24..987 | 13..975 | 4713 | 99.4 | Plus |
Odc2-RA | 1268 | CG8719-RA | 58..926 | 56..924 | 1424 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8005624..8005926 | 440..742 | 1489 | 99.3 | Plus |
2R | 25286936 | 2R | 8004847..8005122 | 13..288 | 1365 | 99.6 | Plus |
2R | 25286936 | 2R | 8005982..8006217 | 741..975 | 1074 | 97.9 | Plus |
2R | 25286936 | 2R | 8005415..8005573 | 286..444 | 795 | 100 | Plus |
2R | 25286936 | 2R | 8007993..8008218 | 440..665 | 530 | 82.3 | Plus |
2R | 25286936 | 2R | 8007303..8007535 | 56..288 | 520 | 81.5 | Plus |
2R | 25286936 | 2R | 8007806..8007945 | 305..444 | 280 | 80 | Plus |
2R | 25286936 | 2R | 8008418..8008535 | 807..924 | 230 | 79.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:19:41 has no hits.
BS07230.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:25 Download gff for
BS07230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-PA | 1..960 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:07 Download gff for
BS07230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8721-PA | 1..960 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:06:48 Download gff for
BS07230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-RA | 17..987 | 7..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:44 Download gff for
BS07230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-RA | 17..987 | 7..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:44 Download gff for
BS07230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8005416..8005573 | 287..444 | 100 | -> | Plus |
2R | 8004840..8005120 | 7..286 | 98 | -> | Plus |
2R | 8005629..8005926 | 445..742 | 99 | -> | Plus |
2R | 8005984..8006217 | 743..975 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:06:48 Download gff for
BS07230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3892345..3892625 | 7..286 | 98 | -> | Plus |
arm_2R | 3892921..3893078 | 287..444 | 100 | -> | Plus |
arm_2R | 3893134..3893431 | 445..742 | 99 | -> | Plus |
arm_2R | 3893489..3893722 | 743..975 | 98 | | Plus |
BS07230.complete Sequence
1217 bp (1217 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635777
> BS07230.complete
GAAGTTATCAGTCGACATGGCGGCCGCTACCCCTGAAATCCAGTTCTACG
AACGCGAGCTCAACATCCGCCGGGTGATCGAGGAGTGCGACCTGCAGCGC
CTGGACCAGGCCCTCAACATCTGCGACCTGTCTAGCGTGGAGCGTAAGCT
GCGCCTCTGGCAGAAGCTCCTGCCCAGGATCAAGCCCTTCTACGCCGTCA
AGTGCAATGACGATCCAATGGTGGTCAGGCTGCTGGCCCAGCTGGGAGCC
GGATTCGACTGCGCCTCCAAAAACGAAGTCAAGCTGGTCTTGGGCTTCGA
TGTCTCGCCGGAGCGTATCATCTTCGCCAATCCCTGCCGCCCTGTCAGCC
ATCTGGAGTACGCCAAGGAGCACCAGGTGTCCAACGGAACGGTGGACAAT
GAGTTCGAGGTATACAAGCTGCACACGCACTATCCCAACTCCAACCTGAT
CGTGAGATTCAAGAGCGAGGCCAAGGAGGCACAGTGCCCACTGGGCGACA
AATTTGGCTGTGATGCGGATGTGGATGCAGCGGCCCTAATGCTGCTGGCC
AAATCCTTGGAGCTGAAGGTGACCGGCACCAGTTTCCACGTCGGCTCCGG
ATGCAGCGAGCTGCAGGCCTACGATCGGGCCATCAAGAAGGCCAAGAACC
TCTTCAAGTTCGGCGCACTACTGGGCTATGACATGGACTTTCTGGACATT
GGCGGTGGGTTCCCTGGCAGCGATGACGTAAAGTTTGAGAAGATAGCCGA
AAGTGTGAATACCTCGGTGCAGCGTCATTTTCCCGACGAACGCGTTCACA
TAATCGCCGAACCAGGACGCTTCTTTGTGGCGGCAGCCTGCACCTTGGTT
TGCAAGATCCACGCCAAGCGGGAGATCAGGAACGAAGCTGGCAAACTGGA
CACCGTAATGTACTATCTGAATGACGGCGTCTATGGGTCCTTCAACTGCA
TTCTGTACGACCATCAAGTGGTGATTGCAGAGCATTATCTGGACAATGCA
GAATCTTTGCCACACCTAAAGTCCTTGATTTGGGGGCCAAGTTGTGACGC
CCTAGATAAGATTTCGGAGGACCTGCACTTGCCCAACCTAAACCGAGGCG
ATCTTTTGGGATTCCGAAACATGGGCGCCTACACCATGCCCATTGCCAGT
GCATTCAATGGATTCGAAGTCCCCAAGACCCTGTACTTCCAAGCTATATG
AAAGCTTTCTAGACCAT
BS07230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Odc1-RA | 1185 | CG8721-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Odc2-RA | 1182 | CG8719-PA | 40..1161 | 56..1180 | 1570 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Odc1-RA | 1253 | CG8721-RA | 24..1212 | 13..1201 | 5930 | 99.9 | Plus |
Odc2-RA | 1268 | CG8719-RA | 58..1179 | 56..1180 | 1570 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8005624..8005926 | 440..742 | 1500 | 99.7 | Plus |
2R | 25286936 | 2R | 8004847..8005122 | 13..288 | 1365 | 99.6 | Plus |
2R | 25286936 | 2R | 8005982..8006233 | 741..992 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 8005415..8005573 | 286..444 | 795 | 100 | Plus |
2R | 25286936 | 2R | 8006489..8006631 | 1059..1201 | 715 | 100 | Plus |
2R | 25286936 | 2R | 8007993..8008218 | 440..665 | 530 | 82.3 | Plus |
2R | 25286936 | 2R | 8007303..8007535 | 56..288 | 520 | 81.5 | Plus |
2R | 25286936 | 2R | 8006362..8006431 | 991..1060 | 350 | 100 | Plus |
2R | 25286936 | 2R | 8007806..8007945 | 305..444 | 280 | 80 | Plus |
2R | 25286936 | 2R | 8008418..8008535 | 807..924 | 245 | 80.5 | Plus |
2R | 25286936 | 2R | 8008862..8008973 | 1069..1180 | 215 | 79.5 | Plus |
Blast to na_te.dros performed 2014-11-27 14:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 579..633 | 1126..1179 | 110 | 71.4 | Plus |
BS07230.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:42 Download gff for
BS07230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-RA | 1..1185 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:00 Download gff for
BS07230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-RA | 38..1235 | 7..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:12 Download gff for
BS07230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-RA | 28..1211 | 17..1200 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:42 Download gff for
BS07230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-RA | 38..1235 | 7..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:31 Download gff for
BS07230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Odc1-RA | 28..1211 | 17..1200 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:31 Download gff for
BS07230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8005984..8006232 | 743..991 | 100 | -> | Plus |
2R | 8006363..8006431 | 992..1060 | 100 | -> | Plus |
2R | 8006491..8006630 | 1061..1200 | 100 | | Plus |
2R | 8005416..8005573 | 287..444 | 100 | -> | Plus |
2R | 8005629..8005926 | 445..742 | 100 | -> | Plus |
2R | 8004851..8005120 | 17..286 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:12 Download gff for
BS07230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3892356..3892625 | 17..286 | 100 | -> | Plus |
arm_2R | 3892921..3893078 | 287..444 | 100 | -> | Plus |
arm_2R | 3893134..3893431 | 445..742 | 100 | -> | Plus |
arm_2R | 3893489..3893737 | 743..991 | 100 | -> | Plus |
arm_2R | 3893868..3893936 | 992..1060 | 100 | -> | Plus |
arm_2R | 3893996..3894135 | 1061..1200 | 100 | | Plus |
BS07230.pep Sequence
Translation from 16 to 1200
> BS07230.pep
MAAATPEIQFYERELNIRRVIEECDLQRLDQALNICDLSSVERKLRLWQK
LLPRIKPFYAVKCNDDPMVVRLLAQLGAGFDCASKNEVKLVLGFDVSPER
IIFANPCRPVSHLEYAKEHQVSNGTVDNEFEVYKLHTHYPNSNLIVRFKS
EAKEAQCPLGDKFGCDADVDAAALMLLAKSLELKVTGTSFHVGSGCSELQ
AYDRAIKKAKNLFKFGALLGYDMDFLDIGGGFPGSDDVKFEKIAESVNTS
VQRHFPDERVHIIAEPGRFFVAAACTLVCKIHAKREIRNEAGKLDTVMYY
LNDGVYGSFNCILYDHQVVIAEHYLDNAESLPHLKSLIWGPSCDALDKIS
EDLHLPNLNRGDLLGFRNMGAYTMPIASAFNGFEVPKTLYFQAI*
BS07230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Odc1-PA | 394 | CG8721-PA | 1..394 | 1..394 | 2073 | 100 | Plus |
Odc2-PA | 393 | CG8719-PA | 8..392 | 8..393 | 1545 | 74.1 | Plus |