Clone BS07231 Report

Search the DGRC for BS07231

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG9010-RA
Protein status:BS07231.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07231.3prime Sequence

958 bp (867 high quality bases) assembled on 2006-01-06

> BS07231.3prime
ATGGTCTAGAAAGCTTCTAGCAAGCACCCTTTTCCTTCGCATCGCATTGG
TCGACCAACTGGGCATAGAGAACTAGGTCAAGGAGACGGCAGGAATATCC
GGTCTCGTTATCGTACCAACTGATCAACTTGACGAAGTTATCGTTTAGGG
CAATACAGGCCTTGGCATCAAAGACGGATGCAAATCGTGAGCCGTTAAAA
TCGGTGGACACCACCTCCTCCTCCACATACCCCAGGATTCCCTTCATTTC
GCATTTGGATGCAGCCTTTATGCACTTCTTGATATCGTCCATTTTGGCGG
GCTTAGAAAGCCTACAGGTGAGGTCCACCACCGAGACATTGGGAACTGGT
ACACGGAAAGCCATACCCGTTAGCTTCCCGTTTAGATCCGGAATCACCTT
GCCGACGGCTTTAGCGGCTCCCGTGGATGCGGGTATGATGTTGGTCATGC
CACTGCGTCCATCCCGCCAGAGTTTGCTGCTGGGTCCGTCGATGATCTTT
TGGGTAGCTGTAGCCGCATGAACGGTGGTCATAAGGCCCTCACATATTTC
AAAGTTATCGTGCACCACCTTGGCCAGCGGCGCCAGGCAATTGGTTGTGC
ATGAGGCATTCGAGATGATTGCTGTGCCCGGCTTGTATGCCTCAAGATTC
ACTCCGCACACAAACATCGGAGCATCGGCAGATGGTGCCGATATGACCAC
CTTTTTGGCCCCACTATCCAAGTGACCTTGACAGGCTTTCAGGGTGGTAA
ACCTACCGGAGCACTCCACCACCGTATGCACGCCCAGGTCGCACCATTTA
ATCTTCTTGACGTCCGACTCCTTAAGCAGCTGGATCTTCTTGCCATTAAC
AACAAGATTGTTCCCGTCGACAGAGATCTTCTGATTGAACTGTCCATGAG
TGGAGTCGTATCGCAGCATGTAGGGCAGATACTTGGGATCCAGTGAGGGA
TCGTTGAT

BS07231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9010-PA 1032 CG9010-RA 91..1032 958..17 4685 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9010-RA 1253 CG9010-RA 191..1133 958..16 4700 99.9 Minus
Gapdh2-RC 1377 CG8893-RC 372..770 725..327 455 75.6 Minus
Gapdh2-RA 1443 CG8893-RA 438..836 725..327 455 75.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16959063..16960005 16..958 4700 99.9 Plus
X 23542271 X 15868656..15869054 725..327 420 73.7 Minus
2R 25286936 2R 7792392..7792784 317..709 405 73.5 Plus
Blast to na_te.dros performed on 2015-02-11 16:21:14 has no hits.

BS07231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:26 Download gff for BS07231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9010-PA 91..1032 17..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:08 Download gff for BS07231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9010-PA 91..1032 17..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:41:55 Download gff for BS07231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 191..1133 16..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:18 Download gff for BS07231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 191..1133 16..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:18 Download gff for BS07231.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16959063..16960005 16..958 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:41:55 Download gff for BS07231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12846568..12847510 16..958 99   Plus

BS07231.5prime Sequence

941 bp (813 high quality bases) assembled on 2006-01-06

> BS07231.5prime
GAAGTTATCAGTCGACATGTCCGGTATTGGCATCAATGGCTTTGGCCGAA
TCGGTCGCATGTTTGCCCGCCAGGCTCTAGTTCGCAAAGATGTCAAGATC
GTGGCAATCAACGATCCCTCACTGGATCCCAAGTATCTGGCCTACATGCT
GCGATACGACTCCACTCATGGACAGTTCAATCAGAAGATCTCTGTCGACG
GGAACAATCTTGTTGTTAATGGCAAGAAGATCCAGCTGCTTAAGGAGTCG
GACGTCAAGAAGATTAAATGGTGCGACCTGGGCGTGCATACGGTGGTGGA
GTGCTCCGGTAGGTTTACCACCCTGAAAGCCTGTCAAGGTCACTTGGATA
GTGGGGCCAAAAAGGTGGTCATATCGGCACCATCTGCCGATGCTCCGATG
TTTGTGTGCGGAGTGAATCTTGAGGCATACAAGCCGGGCACAGCAATCAT
CTCGAATGCCTCATGCACAACCAATTGCCTGGCGCCGCTGGCCAAGGTGG
TGCACGATAACTTTGAAATATGTGAGGGCCTTATGACCACCGTTCATGCG
GCTACAGCTACCCAAAAGATCATCGACGGACCCAGCAGCAAACTCTGGCG
GGATGGACGCAGTGGCATGACCAACATCATACCCGCATCCACGGGAGCCG
CTAAAGCCGTCGGCAAGGTGATTCCGGATCTAAACGGGAAGCTAACGGGT
ATGGCTTTCCGTGTACCAGTTCCCAATGTCTCGGTGGTGGACCTCACCTG
TAGGCTTTCTAAGCCCGCCAAAATGGACGATATCAAGAAGTGCATAAAGG
CTGCATCAAAATGCGAAATGAANGGAATCCTGNGGTATGTGGAGGAAGGA
GGTGGTGTCCACCGATTTAACGGCTCACGATTTGCATCCGTCTTTGATGC
CAGGCCTGTATTGCCTAAACGATAACTTCGTCAAGTTGATC

BS07231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9010-PA 1032 CG9010-RA 1..830 17..846 4087 99.6 Plus
CG9010-PA 1032 CG9010-RA 850..886 866..902 185 100 Plus
CG9010-PA 1032 CG9010-RA 900..927 914..941 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9010-RA 1253 CG9010-RA 101..1027 17..941 4503 99.2 Plus
Gapdh2-RC 1377 CG8893-RC 372..770 340..738 455 75.6 Plus
Gapdh2-RA 1443 CG8893-RA 438..836 340..738 455 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16959169..16960095 941..17 4403 99.2 Minus
X 23542271 X 15868656..15869054 340..738 420 73.7 Plus
2R 25286936 2R 7792392..7792784 748..356 405 73.5 Minus
Blast to na_te.dros performed on 2015-02-12 06:29:05 has no hits.

BS07231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:27 Download gff for BS07231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9010-PA 1..927 17..941 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:11 Download gff for BS07231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9010-PA 1..927 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:24 Download gff for BS07231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 95..1027 12..941 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:04 Download gff for BS07231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 95..1027 12..941 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:04 Download gff for BS07231.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16959169..16960101 12..941 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:24 Download gff for BS07231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12846674..12847606 12..941 98   Minus

BS07231.complete Sequence

1064 bp assembled on 2007-10-17

GenBank Submission: FJ635778

> BS07231.complete
GAAGTTATCAGTCGACATGTCCGGTATTGGCATCAATGGCTTTGGCCGAA
TCGGTCGCATGTTTGCCCGCCAGGCTCTAGTTCGCAAAGATGTCAAGATC
GTGGCAATCAACGATCCCTCACTGGATCCCAAGTATCTGGCCTACATGCT
GCGATACGACTCCACTCATGGACAGTTCAATCAGAAGATCTCTGTCGACG
GGAACAATCTTGTTGTTAATGGCAAGAAGATCCAGCTGCTTAAGGAGTCG
GACGTCAAGAAGATTAAATGGTGCGACCTGGGCGTGCATACGGTGGTGGA
GTGCTCCGGTAGGTTTACCACCCTGAAAGCCTGTCAAGGTCACTTGGATA
GTGGGGCCAAAAAGGTGGTCATATCGGCACCATCTGCCGATGCTCCGATG
TTTGTGTGCGGAGTGAATCTTGAGGCATACAAGCCGGGCACAGCAATCAT
CTCGAATGCCTCATGCACAACCAATTGCCTGGCGCCGCTGGCCAAGGTGG
TGCACGATAACTTTGAAATATGTGAGGGCCTTATGACCACCGTTCATGCG
GCTACAGCTACCCAAAAGATCATCGACGGACCCAGCAGCAAACTCTGGCG
GGATGGACGCAGTGGCATGACCAACATCATACCCGCATCCACGGGAGCCG
CTAAAGCCGTCGGCAAGGTGATTCCGGATCTAAACGGGAAGCTAACGGGT
ATGGCTTTCCGTGTACCAGTTCCCAATGTCTCGGTGGTGGACCTCACCTG
TAGGCTTTCTAAGCCCGCCAAAATGGACGATATCAAGAAGTGCATAAAGG
CTGCATCCAAATGCGAAATGAAGGGAATCCTGGGGTATGTGGAGGAGGAG
GTGGTGTCCACCGATTTTAACGGCTCACGATTTGCATCCGTCTTTGATGC
CAAGGCCTGTATTGCCCTAAACGATAACTTCGTCAAGTTGATCAGTTGGT
ACGATAACGAGACCGGATATTCCTGCCGTCTCCTTGACCTAGTTCTCTAT
GCCCAGTTGGTCGACCAATGCGATGCGAAGGAAAAGGGTGCTTGCTAGAA
GCTTTCTAGACCAT

BS07231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9010-RA 1032 CG9010-PA 1..1032 17..1048 5160 100 Plus
Gapdh2-RC 999 CG8893-PC 321..719 340..738 420 73.7 Plus
Gapdh2-RA 999 CG8893-PA 321..719 340..738 420 73.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9010-RA 1253 CG9010-RA 101..1133 17..1049 5165 100 Plus
Gapdh2-RC 1377 CG8893-RC 372..770 340..738 420 73.7 Plus
Gapdh2-RA 1443 CG8893-RA 438..836 340..738 420 73.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16959063..16960095 1049..17 5165 100 Minus
X 23542271 X 15868656..15869054 340..738 420 73.7 Plus
2R 25286936 2R 7792392..7792784 748..356 405 73.5 Minus
Blast to na_te.dros performed on 2014-11-27 06:41:18 has no hits.

BS07231.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:01 Download gff for BS07231.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 1..1032 17..1048 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:16 Download gff for BS07231.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 53..1084 17..1048 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:48 Download gff for BS07231.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 101..1132 17..1048 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:01 Download gff for BS07231.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 47..1085 12..1049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:48 Download gff for BS07231.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 101..1132 17..1048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:48 Download gff for BS07231.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16959064..16960095 17..1048 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:48 Download gff for BS07231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12846569..12847600 17..1048 100   Minus

BS07231.pep Sequence

Translation from 16 to 1047

> BS07231.pep
MSGIGINGFGRIGRMFARQALVRKDVKIVAINDPSLDPKYLAYMLRYDST
HGQFNQKISVDGNNLVVNGKKIQLLKESDVKKIKWCDLGVHTVVECSGRF
TTLKACQGHLDSGAKKVVISAPSADAPMFVCGVNLEAYKPGTAIISNASC
TTNCLAPLAKVVHDNFEICEGLMTTVHAATATQKIIDGPSSKLWRDGRSG
MTNIIPASTGAAKAVGKVIPDLNGKLTGMAFRVPVPNVSVVDLTCRLSKP
AKMDDIKKCIKAASKCEMKGILGYVEEEVVSTDFNGSRFASVFDAKACIA
LNDNFVKLISWYDNETGYSCRLLDLVLYAQLVDQCDAKEKGAC*

BS07231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9010-PA 343 CG9010-PA 1..343 1..343 1787 100 Plus
Gapdh2-PC 332 CG8893-PC 1..332 1..333 1114 64.9 Plus
Gapdh2-PA 332 CG8893-PA 1..332 1..333 1114 64.9 Plus
Gapdh1-PB 332 CG12055-PB 1..332 1..333 1114 65.2 Plus
Gapdh1-PA 332 CG12055-PA 1..332 1..333 1114 65.2 Plus