Clone Sequence Records
BS07231.3prime Sequence
958 bp (867 high quality bases) assembled on 2006-01-06
> BS07231.3prime
ATGGTCTAGAAAGCTTCTAGCAAGCACCCTTTTCCTTCGCATCGCATTGG
TCGACCAACTGGGCATAGAGAACTAGGTCAAGGAGACGGCAGGAATATCC
GGTCTCGTTATCGTACCAACTGATCAACTTGACGAAGTTATCGTTTAGGG
CAATACAGGCCTTGGCATCAAAGACGGATGCAAATCGTGAGCCGTTAAAA
TCGGTGGACACCACCTCCTCCTCCACATACCCCAGGATTCCCTTCATTTC
GCATTTGGATGCAGCCTTTATGCACTTCTTGATATCGTCCATTTTGGCGG
GCTTAGAAAGCCTACAGGTGAGGTCCACCACCGAGACATTGGGAACTGGT
ACACGGAAAGCCATACCCGTTAGCTTCCCGTTTAGATCCGGAATCACCTT
GCCGACGGCTTTAGCGGCTCCCGTGGATGCGGGTATGATGTTGGTCATGC
CACTGCGTCCATCCCGCCAGAGTTTGCTGCTGGGTCCGTCGATGATCTTT
TGGGTAGCTGTAGCCGCATGAACGGTGGTCATAAGGCCCTCACATATTTC
AAAGTTATCGTGCACCACCTTGGCCAGCGGCGCCAGGCAATTGGTTGTGC
ATGAGGCATTCGAGATGATTGCTGTGCCCGGCTTGTATGCCTCAAGATTC
ACTCCGCACACAAACATCGGAGCATCGGCAGATGGTGCCGATATGACCAC
CTTTTTGGCCCCACTATCCAAGTGACCTTGACAGGCTTTCAGGGTGGTAA
ACCTACCGGAGCACTCCACCACCGTATGCACGCCCAGGTCGCACCATTTA
ATCTTCTTGACGTCCGACTCCTTAAGCAGCTGGATCTTCTTGCCATTAAC
AACAAGATTGTTCCCGTCGACAGAGATCTTCTGATTGAACTGTCCATGAG
TGGAGTCGTATCGCAGCATGTAGGGCAGATACTTGGGATCCAGTGAGGGA
TCGTTGAT
BS07231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9010-PA | 1032 | CG9010-RA | 91..1032 | 958..17 | 4685 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9010-RA | 1253 | CG9010-RA | 191..1133 | 958..16 | 4700 | 99.9 | Minus |
Gapdh2-RC | 1377 | CG8893-RC | 372..770 | 725..327 | 455 | 75.6 | Minus |
Gapdh2-RA | 1443 | CG8893-RA | 438..836 | 725..327 | 455 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16959063..16960005 | 16..958 | 4700 | 99.9 | Plus |
X | 23542271 | X | 15868656..15869054 | 725..327 | 420 | 73.7 | Minus |
2R | 25286936 | 2R | 7792392..7792784 | 317..709 | 405 | 73.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:21:14 has no hits.
BS07231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:26 Download gff for
BS07231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-PA | 91..1032 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:08 Download gff for
BS07231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-PA | 91..1032 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:41:55 Download gff for
BS07231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-RA | 191..1133 | 16..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:18 Download gff for
BS07231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-RA | 191..1133 | 16..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:18 Download gff for
BS07231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16959063..16960005 | 16..958 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:41:55 Download gff for
BS07231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12846568..12847510 | 16..958 | 99 | | Plus |
BS07231.5prime Sequence
941 bp (813 high quality bases) assembled on 2006-01-06
> BS07231.5prime
GAAGTTATCAGTCGACATGTCCGGTATTGGCATCAATGGCTTTGGCCGAA
TCGGTCGCATGTTTGCCCGCCAGGCTCTAGTTCGCAAAGATGTCAAGATC
GTGGCAATCAACGATCCCTCACTGGATCCCAAGTATCTGGCCTACATGCT
GCGATACGACTCCACTCATGGACAGTTCAATCAGAAGATCTCTGTCGACG
GGAACAATCTTGTTGTTAATGGCAAGAAGATCCAGCTGCTTAAGGAGTCG
GACGTCAAGAAGATTAAATGGTGCGACCTGGGCGTGCATACGGTGGTGGA
GTGCTCCGGTAGGTTTACCACCCTGAAAGCCTGTCAAGGTCACTTGGATA
GTGGGGCCAAAAAGGTGGTCATATCGGCACCATCTGCCGATGCTCCGATG
TTTGTGTGCGGAGTGAATCTTGAGGCATACAAGCCGGGCACAGCAATCAT
CTCGAATGCCTCATGCACAACCAATTGCCTGGCGCCGCTGGCCAAGGTGG
TGCACGATAACTTTGAAATATGTGAGGGCCTTATGACCACCGTTCATGCG
GCTACAGCTACCCAAAAGATCATCGACGGACCCAGCAGCAAACTCTGGCG
GGATGGACGCAGTGGCATGACCAACATCATACCCGCATCCACGGGAGCCG
CTAAAGCCGTCGGCAAGGTGATTCCGGATCTAAACGGGAAGCTAACGGGT
ATGGCTTTCCGTGTACCAGTTCCCAATGTCTCGGTGGTGGACCTCACCTG
TAGGCTTTCTAAGCCCGCCAAAATGGACGATATCAAGAAGTGCATAAAGG
CTGCATCAAAATGCGAAATGAANGGAATCCTGNGGTATGTGGAGGAAGGA
GGTGGTGTCCACCGATTTAACGGCTCACGATTTGCATCCGTCTTTGATGC
CAGGCCTGTATTGCCTAAACGATAACTTCGTCAAGTTGATC
BS07231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9010-PA | 1032 | CG9010-RA | 1..830 | 17..846 | 4087 | 99.6 | Plus |
CG9010-PA | 1032 | CG9010-RA | 850..886 | 866..902 | 185 | 100 | Plus |
CG9010-PA | 1032 | CG9010-RA | 900..927 | 914..941 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9010-RA | 1253 | CG9010-RA | 101..1027 | 17..941 | 4503 | 99.2 | Plus |
Gapdh2-RC | 1377 | CG8893-RC | 372..770 | 340..738 | 455 | 75.6 | Plus |
Gapdh2-RA | 1443 | CG8893-RA | 438..836 | 340..738 | 455 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16959169..16960095 | 941..17 | 4403 | 99.2 | Minus |
X | 23542271 | X | 15868656..15869054 | 340..738 | 420 | 73.7 | Plus |
2R | 25286936 | 2R | 7792392..7792784 | 748..356 | 405 | 73.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:29:05 has no hits.
BS07231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:27 Download gff for
BS07231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-PA | 1..927 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:11 Download gff for
BS07231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-PA | 1..927 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:24 Download gff for
BS07231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-RA | 95..1027 | 12..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:04 Download gff for
BS07231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-RA | 95..1027 | 12..941 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:04 Download gff for
BS07231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16959169..16960101 | 12..941 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:24 Download gff for
BS07231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12846674..12847606 | 12..941 | 98 | | Minus |
BS07231.complete Sequence
1064 bp assembled on 2007-10-17
GenBank Submission: FJ635778
> BS07231.complete
GAAGTTATCAGTCGACATGTCCGGTATTGGCATCAATGGCTTTGGCCGAA
TCGGTCGCATGTTTGCCCGCCAGGCTCTAGTTCGCAAAGATGTCAAGATC
GTGGCAATCAACGATCCCTCACTGGATCCCAAGTATCTGGCCTACATGCT
GCGATACGACTCCACTCATGGACAGTTCAATCAGAAGATCTCTGTCGACG
GGAACAATCTTGTTGTTAATGGCAAGAAGATCCAGCTGCTTAAGGAGTCG
GACGTCAAGAAGATTAAATGGTGCGACCTGGGCGTGCATACGGTGGTGGA
GTGCTCCGGTAGGTTTACCACCCTGAAAGCCTGTCAAGGTCACTTGGATA
GTGGGGCCAAAAAGGTGGTCATATCGGCACCATCTGCCGATGCTCCGATG
TTTGTGTGCGGAGTGAATCTTGAGGCATACAAGCCGGGCACAGCAATCAT
CTCGAATGCCTCATGCACAACCAATTGCCTGGCGCCGCTGGCCAAGGTGG
TGCACGATAACTTTGAAATATGTGAGGGCCTTATGACCACCGTTCATGCG
GCTACAGCTACCCAAAAGATCATCGACGGACCCAGCAGCAAACTCTGGCG
GGATGGACGCAGTGGCATGACCAACATCATACCCGCATCCACGGGAGCCG
CTAAAGCCGTCGGCAAGGTGATTCCGGATCTAAACGGGAAGCTAACGGGT
ATGGCTTTCCGTGTACCAGTTCCCAATGTCTCGGTGGTGGACCTCACCTG
TAGGCTTTCTAAGCCCGCCAAAATGGACGATATCAAGAAGTGCATAAAGG
CTGCATCCAAATGCGAAATGAAGGGAATCCTGGGGTATGTGGAGGAGGAG
GTGGTGTCCACCGATTTTAACGGCTCACGATTTGCATCCGTCTTTGATGC
CAAGGCCTGTATTGCCCTAAACGATAACTTCGTCAAGTTGATCAGTTGGT
ACGATAACGAGACCGGATATTCCTGCCGTCTCCTTGACCTAGTTCTCTAT
GCCCAGTTGGTCGACCAATGCGATGCGAAGGAAAAGGGTGCTTGCTAGAA
GCTTTCTAGACCAT
BS07231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9010-RA | 1032 | CG9010-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Gapdh2-RC | 999 | CG8893-PC | 321..719 | 340..738 | 420 | 73.7 | Plus |
Gapdh2-RA | 999 | CG8893-PA | 321..719 | 340..738 | 420 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9010-RA | 1253 | CG9010-RA | 101..1133 | 17..1049 | 5165 | 100 | Plus |
Gapdh2-RC | 1377 | CG8893-RC | 372..770 | 340..738 | 420 | 73.7 | Plus |
Gapdh2-RA | 1443 | CG8893-RA | 438..836 | 340..738 | 420 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16959063..16960095 | 1049..17 | 5165 | 100 | Minus |
X | 23542271 | X | 15868656..15869054 | 340..738 | 420 | 73.7 | Plus |
2R | 25286936 | 2R | 7792392..7792784 | 748..356 | 405 | 73.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:41:18 has no hits.
BS07231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:01 Download gff for
BS07231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-RA | 1..1032 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:16 Download gff for
BS07231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-RA | 53..1084 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:48 Download gff for
BS07231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-RA | 101..1132 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:01 Download gff for
BS07231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-RA | 47..1085 | 12..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:48 Download gff for
BS07231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9010-RA | 101..1132 | 17..1048 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:48 Download gff for
BS07231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16959064..16960095 | 17..1048 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:48 Download gff for
BS07231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12846569..12847600 | 17..1048 | 100 | | Minus |
BS07231.pep Sequence
Translation from 16 to 1047
> BS07231.pep
MSGIGINGFGRIGRMFARQALVRKDVKIVAINDPSLDPKYLAYMLRYDST
HGQFNQKISVDGNNLVVNGKKIQLLKESDVKKIKWCDLGVHTVVECSGRF
TTLKACQGHLDSGAKKVVISAPSADAPMFVCGVNLEAYKPGTAIISNASC
TTNCLAPLAKVVHDNFEICEGLMTTVHAATATQKIIDGPSSKLWRDGRSG
MTNIIPASTGAAKAVGKVIPDLNGKLTGMAFRVPVPNVSVVDLTCRLSKP
AKMDDIKKCIKAASKCEMKGILGYVEEEVVSTDFNGSRFASVFDAKACIA
LNDNFVKLISWYDNETGYSCRLLDLVLYAQLVDQCDAKEKGAC*
BS07231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9010-PA | 343 | CG9010-PA | 1..343 | 1..343 | 1787 | 100 | Plus |
Gapdh2-PC | 332 | CG8893-PC | 1..332 | 1..333 | 1114 | 64.9 | Plus |
Gapdh2-PA | 332 | CG8893-PA | 1..332 | 1..333 | 1114 | 64.9 | Plus |
Gapdh1-PB | 332 | CG12055-PB | 1..332 | 1..333 | 1114 | 65.2 | Plus |
Gapdh1-PA | 332 | CG12055-PA | 1..332 | 1..333 | 1114 | 65.2 | Plus |