Clone BS07234 Report

Search the DGRC for BS07234

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:34
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Est7-RA
Protein status:BS07234.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07234.3prime Sequence

861 bp (804 high quality bases) assembled on 2006-01-06

> BS07234.3prime
ATGGTCTAGAAAGCTTTTAAAACAATAAATCTTTGTTGTCGTCATAGAGG
CTCTCCCAGACCTTCAATTTGGGCCACTCAGGCAGATCGATGAACTTCAG
GTCATCACTGATGTTGAGGCACTTGATGACCTCGTCGGATTTGCGAACTG
GATCAATGGTCAGAGTGTCCATACCGTTGATCTTCTCGCTGTAGGGATTA
CCCGTGGCAGCAAACTGGGTCCAGATGCCCACGGTTCGTTCGATGTTCCT
GTACTCGCGACTTTCCTTCGGCAACCGGCGAGCCAGCAGGCTGCTGAATT
GGTAGCTCAAATCGTCGGCATGGCTGACCCCCTTGACACCGCGTCCCAAC
CGCATAATGCGGTACGGAAAAATGAGCTCCTCGGAGTCGAAGTCATATCG
ATAGAAATATACTGGAGCTCCAGCCGCGTACGCGTGTCGGGAATGGACCA
CCCTCAGGGCCGGAAACACGAAGTAGTAAATCGAACAGAGATCCATGTAA
TTATCTGGGGTGCTTTCTGAGCCAGTGCGATGAACATCTCGAATCTGTGC
ACTCCACGAATCCAGTTTTTCTTTACTGGGCTCCGTGGCCAGCAATTCTT
TGGGAATGAAAGGTGTGCCAGCATCAAGCTGCTGCAGCACCTGCGGCATA
AGCTTTACCTCTGGAACCCACAGCAGGCCCTCGTACGAAGTGTTTCCTAT
AAACATGGGGATGGAGTTACTCCAGGCGGTCTTCATCATCTCCTTTGGAG
GCTTGGATATCACACATTCGGGCGTGGAGAATGGTTCCAGGGATGGGCCA
AAGGCAAACATTATCTTGTTCATGCGTTCCTCCAGTGTCAGGACATTTTT
CTCCACGCGAA

BS07234.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1112-PA 1719 alpha-Est7-RA 875..1719 861..17 4200 99.8 Minus
CG1112-PB 1194 alpha-Est7-RB 472..1194 739..17 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est7-RA 2017 CG1112-RA 985..1830 861..16 4215 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7519750..7520224 16..490 2375 100 Plus
3R 32079331 3R 7520512..7520712 661..861 990 99.5 Plus
3R 32079331 3R 7520280..7520452 491..663 865 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:05:17 has no hits.

BS07234.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:32 Download gff for BS07234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1112-PA 877..1719 17..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:17 Download gff for BS07234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1112-PA 877..1719 17..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:51 Download gff for BS07234.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est7-RA 985..1833 10..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:17 Download gff for BS07234.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est7-RA 985..1833 10..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:17 Download gff for BS07234.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7519747..7520224 10..490 99 <- Plus
3R 7520280..7520449 491..660 100 <- Plus
3R 7520512..7520712 661..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:51 Download gff for BS07234.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3345469..3345946 10..490 99 <- Plus
arm_3R 3346002..3346171 491..660 100 <- Plus
arm_3R 3346234..3346434 661..861 99   Plus

BS07234.5prime Sequence

834 bp (830 high quality bases) assembled on 2006-01-06

> BS07234.5prime
GAAGTTATCAGTCGACATGAATAAGAACCTCGGCTTTGTGGAGCGCTTGC
GGTGGCGCCTCAAAACCATCGAGCATAAAGTCCAGCAGTATCGCCAGTCG
ACCAATGAAACAGTTGTCGCCGACACGGAGTACGGCCAAGTGAGGGGTAT
CAAGCGTCTATCTCTCTACGATGTGCCCTACTTCAGCTTCGAGGGTATCC
CGTACGCCCAGCCTCCGGTGGGGGAGTTGCGGTTTAAGGCCCCTCAGAGG
CCCATTCCCTGGGAGCGAGTTCGCGACTGCAGCCAGCCGAAGGATAAGGC
CGTCCAGGTGCAGTTCGTCTTCGATAAGGTAGAGGGCTCCGAGGACTGCC
TCTATCTCAATGTGTACACCAACAATGTGAAGCCCGACAAGGCTCGCCCG
GTTATGGTTTGGATTCACGGAGGAGGCTTCATTATCGGCGAGGCCAATCG
GGAATGGTATGGCCCGGATTACTTTATGAAAGAAGATGTTGTTCTCGTCA
CGATACAGTACCGACTTGGGGCTTTGGGATTTATGAGTCTTAAGTCCCCC
GAGCTAAATGTACCAGGAAATGCTGGCCTCAAGGATCAGGTGCTGGCCCT
CAAGTGGATCAAGAACAATTGCGCTAGTTTCGGCGGAGATCCCAACTGCA
TCACTGTTTTTGGAGAGAGTGCTGGAGGCGCCTCCACTCACTACATGATG
CTAACCGATCAGACCCAAGGGCTCTTTCATCGCGGCATCTTGCAGTCGGG
CAGTGCCATTTGTCCTTGGGCCTACAACGGCGACATTACCCATAATCCCT
ACAGGATAGCCAAGCTGGTTGGCTACAAGGGCGA

BS07234.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1112-PA 1719 alpha-Est7-RA 1..818 17..834 4090 100 Plus
CG1112-PB 1194 alpha-Est7-RB 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est7-RA 2017 CG1112-RA 107..928 13..834 4095 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7521366..7521682 380..64 1585 100 Minus
3R 32079331 3R 7520769..7521076 834..527 1540 100 Minus
3R 32079331 3R 7521133..7521284 528..377 760 100 Minus
3R 32079331 3R 7523597..7523647 63..13 240 98 Minus
Blast to na_te.dros performed on 2015-02-10 04:31:15 has no hits.

BS07234.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:33 Download gff for BS07234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1112-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:19 Download gff for BS07234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1112-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:48:45 Download gff for BS07234.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est7-RA 101..927 8..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:24:06 Download gff for BS07234.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est7-RA 101..927 8..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:24:06 Download gff for BS07234.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7520770..7521075 528..833 100 <- Minus
3R 7521134..7521284 377..527 100 <- Minus
3R 7521370..7521682 64..376 100 <- Minus
3R 7523597..7523653 8..63 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:48:45 Download gff for BS07234.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3346492..3346797 528..833 100 <- Minus
arm_3R 3346856..3347006 377..527 100 <- Minus
arm_3R 3347092..3347404 64..376 100 <- Minus
arm_3R 3349319..3349375 8..63 94   Minus

BS07234.complete Sequence

1751 bp assembled on 2008-01-02

GenBank Submission: FJ635779

> BS07234.complete
GAAGTTATCAGTCGACATGAATAAGAACCTCGGCTTTGTGGAGCGCTTGC
GGTGGCGCCTCAAAACCATCGAGCATAAAGTCCAGCAGTATCGCCAGTCG
ACCAATGAAACAGTTGTCGCCGACACGGAGTACGGCCAAGTGAGGGGTAT
CAAGCGTCTATCTCTCTACGATGTGCCCTACTTCAGCTTCGAGGGTATCC
CGTACGCCCAGCCTCCGGTGGGGGAGTTGCGGTTTAAGGCCCCTCAGAGG
CCCATTCCCTGGGAGCGAGTTCGCGACTGCAGCCAGCCGAAGGATAAGGC
CGTCCAGGTGCAGTTCGTCTTCGATAAGGTAGAGGGCTCCGAGGACTGCC
TCTATCTCAATGTGTACACCAACAATGTGAAGCCCGACAAGGCTCGCCCG
GTTATGGTTTGGATTCACGGAGGAGGCTTCATTATCGGCGAGGCCAATCG
GGAATGGTATGGCCCGGATTACTTTATGAAAGAAGATGTTGTTCTCGTCA
CGATACAGTACCGACTTGGGGCTTTGGGATTTATGAGTCTTAAGTCCCCC
GAGCTAAATGTACCAGGAAATGCTGGCCTCAAGGATCAGGTGCTGGCCCT
CAAGTGGATCAAGAACAATTGCGCTAGTTTCGGCGGAGATCCCAACTGCA
TCACTGTTTTTGGAGAGAGTGCTGGAGGCGCCTCCACTCACTACATGATG
CTAACCGATCAGACCCAAGGGCTCTTTCATCGCGGCATCTTGCAGTCGGG
CAGTGCCATTTGTCCTTGGGCCTACAACGGCGACATTACCCATAATCCCT
ACAGGATAGCCAAGCTGGTTGGCTACAAGGGCGAGGACAACGACAAGGAT
GTGCTGGAGTTCTTGCAGAACGTAAAGGCCAAGGATCTTATTCGCGTGGA
GGAAAATGTCCTGACACTGGAGGAACGCATGAACAAGATAATGTTTGCCT
TTGGCCCATCCCTGGAACCATTCTCCACGCCCGAATGTGTGATATCCAAG
CCTCCAAAGGAGATGATGAAGACCGCCTGGAGTAACTCCATCCCCATGTT
TATAGGAAACACTTCGTACGAGGGCCTGCTGTGGGTTCCAGAGGTAAAGC
TTATGCCGCAGGTGCTGCAGCAGCTTGATGCTGGCACACCTTTCATTCCC
AAAGAATTGCTGGCCACGGAGCCCAGTAAAGAAAAACTGGATTCGTGGAG
TGCACAGATTCGAGATGTTCATCGCACTGGCTCAGAAAGCACCCCAGATA
ATTACATGGATCTCTGTTCGATTTACTACTTCGTGTTTCCGGCCCTGAGG
GTGGTCCATTCCCGACACGCGTACGCGGCTGGAGCTCCAGTATATTTCTA
TCGATATGACTTCGACTCCGAGGAGCTCATTTTTCCGTACCGCATTATGC
GGTTGGGACGCGGTGTCAAGGGGGTCAGCCATGCCGACGATTTGAGCTAC
CAATTCAGCAGCCTGCTGGCTCGCCGGTTGCCGAAGGAAAGTCGCGAGTA
CAGGAACATCGAACGAACCGTGGGCATCTGGACCCAGTTTGCTGCCACGG
GTAATCCCTACAGCGAGAAGATCAACGGTATGGACACTCTGACCATTGAT
CCAGTTCGCAAATCCGACGAGGTCATCAAGTGCCTCAACATCAGTGATGA
CCTGAAGTTCATCGATCTGCCTGAGTGGCCCAAATTGAAGGTCTGGGAGA
GCCTCTATGACGACAACAAAGATTTATTGTTTTAAAAGCTTTCTAGACCA
T

BS07234.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est7-RA 1719 CG1112-PA 1..1719 17..1735 8595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est7-RA 2017 CG1112-RA 107..1830 13..1736 8605 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7520512..7521076 1091..527 2825 100 Minus
3R 32079331 3R 7519750..7520224 1736..1262 2375 100 Minus
3R 32079331 3R 7521366..7521682 380..64 1585 100 Minus
3R 32079331 3R 7520280..7520452 1261..1089 865 100 Minus
3R 32079331 3R 7521133..7521284 528..377 760 100 Minus
3R 32079331 3R 7523597..7523647 63..13 240 98 Minus
Blast to na_te.dros performed on 2014-11-27 19:41:41 has no hits.

BS07234.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:02 Download gff for BS07234.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est7-RA 1..1719 17..1735 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:02 Download gff for BS07234.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est7-RA 112..1828 17..1733 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:10 Download gff for BS07234.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est7-RA 111..1827 17..1733 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:02 Download gff for BS07234.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est7-RA 102..1834 8..1742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:31 Download gff for BS07234.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est7-RA 111..1827 17..1733 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:31 Download gff for BS07234.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7519753..7520224 1262..1733 100 <- Minus
3R 7520280..7520449 1092..1261 100 <- Minus
3R 7520512..7521075 528..1091 100 <- Minus
3R 7521134..7521284 377..527 100 <- Minus
3R 7521370..7521682 64..376 100 <- Minus
3R 7523597..7523643 17..63 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:10 Download gff for BS07234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3345475..3345946 1262..1733 100 <- Minus
arm_3R 3346002..3346171 1092..1261 100 <- Minus
arm_3R 3346234..3346797 528..1091 100 <- Minus
arm_3R 3346856..3347006 377..527 100 <- Minus
arm_3R 3347092..3347404 64..376 100 <- Minus
arm_3R 3349319..3349365 17..63 100   Minus

BS07234.pep Sequence

Translation from 16 to 1734

> BS07234.pep
MNKNLGFVERLRWRLKTIEHKVQQYRQSTNETVVADTEYGQVRGIKRLSL
YDVPYFSFEGIPYAQPPVGELRFKAPQRPIPWERVRDCSQPKDKAVQVQF
VFDKVEGSEDCLYLNVYTNNVKPDKARPVMVWIHGGGFIIGEANREWYGP
DYFMKEDVVLVTIQYRLGALGFMSLKSPELNVPGNAGLKDQVLALKWIKN
NCASFGGDPNCITVFGESAGGASTHYMMLTDQTQGLFHRGILQSGSAICP
WAYNGDITHNPYRIAKLVGYKGEDNDKDVLEFLQNVKAKDLIRVEENVLT
LEERMNKIMFAFGPSLEPFSTPECVISKPPKEMMKTAWSNSIPMFIGNTS
YEGLLWVPEVKLMPQVLQQLDAGTPFIPKELLATEPSKEKLDSWSAQIRD
VHRTGSESTPDNYMDLCSIYYFVFPALRVVHSRHAYAAGAPVYFYRYDFD
SEELIFPYRIMRLGRGVKGVSHADDLSYQFSSLLARRLPKESREYRNIER
TVGIWTQFAATGNPYSEKINGMDTLTIDPVRKSDEVIKCLNISDDLKFID
LPEWPKLKVWESLYDDNKDLLF*

BS07234.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est7-PA 572 CG1112-PA 1..572 1..572 3055 100 Plus
alpha-Est9-PC 569 CG1128-PC 14..563 15..564 1420 50.8 Plus
alpha-Est8-PA 574 CG1121-PA 1..574 1..572 1392 47.8 Plus
alpha-Est9-PD 587 CG1128-PD 14..581 15..564 1391 49.2 Plus
CG6018-PA 566 CG6018-PA 1..560 1..564 1304 47.5 Plus