Clone Sequence Records
BS07234.3prime Sequence
861 bp (804 high quality bases) assembled on 2006-01-06
> BS07234.3prime
ATGGTCTAGAAAGCTTTTAAAACAATAAATCTTTGTTGTCGTCATAGAGG
CTCTCCCAGACCTTCAATTTGGGCCACTCAGGCAGATCGATGAACTTCAG
GTCATCACTGATGTTGAGGCACTTGATGACCTCGTCGGATTTGCGAACTG
GATCAATGGTCAGAGTGTCCATACCGTTGATCTTCTCGCTGTAGGGATTA
CCCGTGGCAGCAAACTGGGTCCAGATGCCCACGGTTCGTTCGATGTTCCT
GTACTCGCGACTTTCCTTCGGCAACCGGCGAGCCAGCAGGCTGCTGAATT
GGTAGCTCAAATCGTCGGCATGGCTGACCCCCTTGACACCGCGTCCCAAC
CGCATAATGCGGTACGGAAAAATGAGCTCCTCGGAGTCGAAGTCATATCG
ATAGAAATATACTGGAGCTCCAGCCGCGTACGCGTGTCGGGAATGGACCA
CCCTCAGGGCCGGAAACACGAAGTAGTAAATCGAACAGAGATCCATGTAA
TTATCTGGGGTGCTTTCTGAGCCAGTGCGATGAACATCTCGAATCTGTGC
ACTCCACGAATCCAGTTTTTCTTTACTGGGCTCCGTGGCCAGCAATTCTT
TGGGAATGAAAGGTGTGCCAGCATCAAGCTGCTGCAGCACCTGCGGCATA
AGCTTTACCTCTGGAACCCACAGCAGGCCCTCGTACGAAGTGTTTCCTAT
AAACATGGGGATGGAGTTACTCCAGGCGGTCTTCATCATCTCCTTTGGAG
GCTTGGATATCACACATTCGGGCGTGGAGAATGGTTCCAGGGATGGGCCA
AAGGCAAACATTATCTTGTTCATGCGTTCCTCCAGTGTCAGGACATTTTT
CTCCACGCGAA
BS07234.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1112-PA | 1719 | alpha-Est7-RA | 875..1719 | 861..17 | 4200 | 99.8 | Minus |
CG1112-PB | 1194 | alpha-Est7-RB | 472..1194 | 739..17 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est7-RA | 2017 | CG1112-RA | 985..1830 | 861..16 | 4215 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7519750..7520224 | 16..490 | 2375 | 100 | Plus |
3R | 32079331 | 3R | 7520512..7520712 | 661..861 | 990 | 99.5 | Plus |
3R | 32079331 | 3R | 7520280..7520452 | 491..663 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:05:17 has no hits.
BS07234.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:32 Download gff for
BS07234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1112-PA | 877..1719 | 17..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:17 Download gff for
BS07234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1112-PA | 877..1719 | 17..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:51 Download gff for
BS07234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est7-RA | 985..1833 | 10..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:17 Download gff for
BS07234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est7-RA | 985..1833 | 10..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:17 Download gff for
BS07234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7519747..7520224 | 10..490 | 99 | <- | Plus |
3R | 7520280..7520449 | 491..660 | 100 | <- | Plus |
3R | 7520512..7520712 | 661..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:51 Download gff for
BS07234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3345469..3345946 | 10..490 | 99 | <- | Plus |
arm_3R | 3346002..3346171 | 491..660 | 100 | <- | Plus |
arm_3R | 3346234..3346434 | 661..861 | 99 | | Plus |
BS07234.5prime Sequence
834 bp (830 high quality bases) assembled on 2006-01-06
> BS07234.5prime
GAAGTTATCAGTCGACATGAATAAGAACCTCGGCTTTGTGGAGCGCTTGC
GGTGGCGCCTCAAAACCATCGAGCATAAAGTCCAGCAGTATCGCCAGTCG
ACCAATGAAACAGTTGTCGCCGACACGGAGTACGGCCAAGTGAGGGGTAT
CAAGCGTCTATCTCTCTACGATGTGCCCTACTTCAGCTTCGAGGGTATCC
CGTACGCCCAGCCTCCGGTGGGGGAGTTGCGGTTTAAGGCCCCTCAGAGG
CCCATTCCCTGGGAGCGAGTTCGCGACTGCAGCCAGCCGAAGGATAAGGC
CGTCCAGGTGCAGTTCGTCTTCGATAAGGTAGAGGGCTCCGAGGACTGCC
TCTATCTCAATGTGTACACCAACAATGTGAAGCCCGACAAGGCTCGCCCG
GTTATGGTTTGGATTCACGGAGGAGGCTTCATTATCGGCGAGGCCAATCG
GGAATGGTATGGCCCGGATTACTTTATGAAAGAAGATGTTGTTCTCGTCA
CGATACAGTACCGACTTGGGGCTTTGGGATTTATGAGTCTTAAGTCCCCC
GAGCTAAATGTACCAGGAAATGCTGGCCTCAAGGATCAGGTGCTGGCCCT
CAAGTGGATCAAGAACAATTGCGCTAGTTTCGGCGGAGATCCCAACTGCA
TCACTGTTTTTGGAGAGAGTGCTGGAGGCGCCTCCACTCACTACATGATG
CTAACCGATCAGACCCAAGGGCTCTTTCATCGCGGCATCTTGCAGTCGGG
CAGTGCCATTTGTCCTTGGGCCTACAACGGCGACATTACCCATAATCCCT
ACAGGATAGCCAAGCTGGTTGGCTACAAGGGCGA
BS07234.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1112-PA | 1719 | alpha-Est7-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG1112-PB | 1194 | alpha-Est7-RB | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est7-RA | 2017 | CG1112-RA | 107..928 | 13..834 | 4095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7521366..7521682 | 380..64 | 1585 | 100 | Minus |
3R | 32079331 | 3R | 7520769..7521076 | 834..527 | 1540 | 100 | Minus |
3R | 32079331 | 3R | 7521133..7521284 | 528..377 | 760 | 100 | Minus |
3R | 32079331 | 3R | 7523597..7523647 | 63..13 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:31:15 has no hits.
BS07234.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:33 Download gff for
BS07234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1112-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:19 Download gff for
BS07234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1112-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:48:45 Download gff for
BS07234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est7-RA | 101..927 | 8..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:24:06 Download gff for
BS07234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est7-RA | 101..927 | 8..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:24:06 Download gff for
BS07234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7520770..7521075 | 528..833 | 100 | <- | Minus |
3R | 7521134..7521284 | 377..527 | 100 | <- | Minus |
3R | 7521370..7521682 | 64..376 | 100 | <- | Minus |
3R | 7523597..7523653 | 8..63 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:48:45 Download gff for
BS07234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3346492..3346797 | 528..833 | 100 | <- | Minus |
arm_3R | 3346856..3347006 | 377..527 | 100 | <- | Minus |
arm_3R | 3347092..3347404 | 64..376 | 100 | <- | Minus |
arm_3R | 3349319..3349375 | 8..63 | 94 | | Minus |
BS07234.complete Sequence
1751 bp assembled on 2008-01-02
GenBank Submission: FJ635779
> BS07234.complete
GAAGTTATCAGTCGACATGAATAAGAACCTCGGCTTTGTGGAGCGCTTGC
GGTGGCGCCTCAAAACCATCGAGCATAAAGTCCAGCAGTATCGCCAGTCG
ACCAATGAAACAGTTGTCGCCGACACGGAGTACGGCCAAGTGAGGGGTAT
CAAGCGTCTATCTCTCTACGATGTGCCCTACTTCAGCTTCGAGGGTATCC
CGTACGCCCAGCCTCCGGTGGGGGAGTTGCGGTTTAAGGCCCCTCAGAGG
CCCATTCCCTGGGAGCGAGTTCGCGACTGCAGCCAGCCGAAGGATAAGGC
CGTCCAGGTGCAGTTCGTCTTCGATAAGGTAGAGGGCTCCGAGGACTGCC
TCTATCTCAATGTGTACACCAACAATGTGAAGCCCGACAAGGCTCGCCCG
GTTATGGTTTGGATTCACGGAGGAGGCTTCATTATCGGCGAGGCCAATCG
GGAATGGTATGGCCCGGATTACTTTATGAAAGAAGATGTTGTTCTCGTCA
CGATACAGTACCGACTTGGGGCTTTGGGATTTATGAGTCTTAAGTCCCCC
GAGCTAAATGTACCAGGAAATGCTGGCCTCAAGGATCAGGTGCTGGCCCT
CAAGTGGATCAAGAACAATTGCGCTAGTTTCGGCGGAGATCCCAACTGCA
TCACTGTTTTTGGAGAGAGTGCTGGAGGCGCCTCCACTCACTACATGATG
CTAACCGATCAGACCCAAGGGCTCTTTCATCGCGGCATCTTGCAGTCGGG
CAGTGCCATTTGTCCTTGGGCCTACAACGGCGACATTACCCATAATCCCT
ACAGGATAGCCAAGCTGGTTGGCTACAAGGGCGAGGACAACGACAAGGAT
GTGCTGGAGTTCTTGCAGAACGTAAAGGCCAAGGATCTTATTCGCGTGGA
GGAAAATGTCCTGACACTGGAGGAACGCATGAACAAGATAATGTTTGCCT
TTGGCCCATCCCTGGAACCATTCTCCACGCCCGAATGTGTGATATCCAAG
CCTCCAAAGGAGATGATGAAGACCGCCTGGAGTAACTCCATCCCCATGTT
TATAGGAAACACTTCGTACGAGGGCCTGCTGTGGGTTCCAGAGGTAAAGC
TTATGCCGCAGGTGCTGCAGCAGCTTGATGCTGGCACACCTTTCATTCCC
AAAGAATTGCTGGCCACGGAGCCCAGTAAAGAAAAACTGGATTCGTGGAG
TGCACAGATTCGAGATGTTCATCGCACTGGCTCAGAAAGCACCCCAGATA
ATTACATGGATCTCTGTTCGATTTACTACTTCGTGTTTCCGGCCCTGAGG
GTGGTCCATTCCCGACACGCGTACGCGGCTGGAGCTCCAGTATATTTCTA
TCGATATGACTTCGACTCCGAGGAGCTCATTTTTCCGTACCGCATTATGC
GGTTGGGACGCGGTGTCAAGGGGGTCAGCCATGCCGACGATTTGAGCTAC
CAATTCAGCAGCCTGCTGGCTCGCCGGTTGCCGAAGGAAAGTCGCGAGTA
CAGGAACATCGAACGAACCGTGGGCATCTGGACCCAGTTTGCTGCCACGG
GTAATCCCTACAGCGAGAAGATCAACGGTATGGACACTCTGACCATTGAT
CCAGTTCGCAAATCCGACGAGGTCATCAAGTGCCTCAACATCAGTGATGA
CCTGAAGTTCATCGATCTGCCTGAGTGGCCCAAATTGAAGGTCTGGGAGA
GCCTCTATGACGACAACAAAGATTTATTGTTTTAAAAGCTTTCTAGACCA
T
BS07234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est7-RA | 1719 | CG1112-PA | 1..1719 | 17..1735 | 8595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est7-RA | 2017 | CG1112-RA | 107..1830 | 13..1736 | 8605 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7520512..7521076 | 1091..527 | 2825 | 100 | Minus |
3R | 32079331 | 3R | 7519750..7520224 | 1736..1262 | 2375 | 100 | Minus |
3R | 32079331 | 3R | 7521366..7521682 | 380..64 | 1585 | 100 | Minus |
3R | 32079331 | 3R | 7520280..7520452 | 1261..1089 | 865 | 100 | Minus |
3R | 32079331 | 3R | 7521133..7521284 | 528..377 | 760 | 100 | Minus |
3R | 32079331 | 3R | 7523597..7523647 | 63..13 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:41:41 has no hits.
BS07234.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:02 Download gff for
BS07234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est7-RA | 1..1719 | 17..1735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:02 Download gff for
BS07234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est7-RA | 112..1828 | 17..1733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:10 Download gff for
BS07234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est7-RA | 111..1827 | 17..1733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:02 Download gff for
BS07234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est7-RA | 102..1834 | 8..1742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:31 Download gff for
BS07234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est7-RA | 111..1827 | 17..1733 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:31 Download gff for
BS07234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7519753..7520224 | 1262..1733 | 100 | <- | Minus |
3R | 7520280..7520449 | 1092..1261 | 100 | <- | Minus |
3R | 7520512..7521075 | 528..1091 | 100 | <- | Minus |
3R | 7521134..7521284 | 377..527 | 100 | <- | Minus |
3R | 7521370..7521682 | 64..376 | 100 | <- | Minus |
3R | 7523597..7523643 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:10 Download gff for
BS07234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3345475..3345946 | 1262..1733 | 100 | <- | Minus |
arm_3R | 3346002..3346171 | 1092..1261 | 100 | <- | Minus |
arm_3R | 3346234..3346797 | 528..1091 | 100 | <- | Minus |
arm_3R | 3346856..3347006 | 377..527 | 100 | <- | Minus |
arm_3R | 3347092..3347404 | 64..376 | 100 | <- | Minus |
arm_3R | 3349319..3349365 | 17..63 | 100 | | Minus |
BS07234.pep Sequence
Translation from 16 to 1734
> BS07234.pep
MNKNLGFVERLRWRLKTIEHKVQQYRQSTNETVVADTEYGQVRGIKRLSL
YDVPYFSFEGIPYAQPPVGELRFKAPQRPIPWERVRDCSQPKDKAVQVQF
VFDKVEGSEDCLYLNVYTNNVKPDKARPVMVWIHGGGFIIGEANREWYGP
DYFMKEDVVLVTIQYRLGALGFMSLKSPELNVPGNAGLKDQVLALKWIKN
NCASFGGDPNCITVFGESAGGASTHYMMLTDQTQGLFHRGILQSGSAICP
WAYNGDITHNPYRIAKLVGYKGEDNDKDVLEFLQNVKAKDLIRVEENVLT
LEERMNKIMFAFGPSLEPFSTPECVISKPPKEMMKTAWSNSIPMFIGNTS
YEGLLWVPEVKLMPQVLQQLDAGTPFIPKELLATEPSKEKLDSWSAQIRD
VHRTGSESTPDNYMDLCSIYYFVFPALRVVHSRHAYAAGAPVYFYRYDFD
SEELIFPYRIMRLGRGVKGVSHADDLSYQFSSLLARRLPKESREYRNIER
TVGIWTQFAATGNPYSEKINGMDTLTIDPVRKSDEVIKCLNISDDLKFID
LPEWPKLKVWESLYDDNKDLLF*
BS07234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est7-PA | 572 | CG1112-PA | 1..572 | 1..572 | 3055 | 100 | Plus |
alpha-Est9-PC | 569 | CG1128-PC | 14..563 | 15..564 | 1420 | 50.8 | Plus |
alpha-Est8-PA | 574 | CG1121-PA | 1..574 | 1..572 | 1392 | 47.8 | Plus |
alpha-Est9-PD | 587 | CG1128-PD | 14..581 | 15..564 | 1391 | 49.2 | Plus |
CG6018-PA | 566 | CG6018-PA | 1..560 | 1..564 | 1304 | 47.5 | Plus |