Clone BS07235 Report

Search the DGRC for BS07235

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptshrb-RA
Protein status:BS07235.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07235.3prime Sequence

711 bp (710 high quality bases) assembled on 2006-01-06

> BS07235.3prime
ATGGTCTAGAAAGCTTTTAGTTGGACCAGGATAAAAGCTGCTTCATGTCT
GGATCATCATCATCCTCCACGGCAGTCGTGGTTGTCGCCTTTTTCTTTTC
TTTGGCCTTCTCGGGCAAATCTTCTGTGGGTGCTTCTGGCAATGTGGGCG
TCGGCTCGGGTATGCCAATGATTTCCTTATCAAAGTTCTCCTGCTCCAGC
TCGTCGAGTTCCCGCTCGAGATCCTCATCATCCAGATCGGCGCCGAATGC
CACTGGGTTCGAAATGGCATCGGAAATCTCGCGGGCCACGTCCTGCTGCT
CGGCAATGTCATCCATCATGTCGTGCACCTTGTCCACGTCCATATTCTGA
TGGGCTCTCTTGAGGGCATCCGCGGCATTCTTCATCGTGGTCAAGACGGC
AGTGTTTGTGTTGGCGCTCTCCAGAGCCTCGCGCTGCATTTCGATTGTGG
ACAGGGTGCCATCGATCTGCTGGAGTTGCTTCTCCAGCCGCTTCTTTTTC
TTGAGTGCTTGCAGGGCCACTCTTTTGTTTTTAGACGCATTCTTGCGGGC
TATATTCAGTTCGTCCTCGATCTTGGCCTCCAGGAACTCCTGCTTTTTGA
TAAGCATGTTCTCCGTCTCGCGCAGCTTCTGTATCGCCTCGCCGGTGGTG
GGGGCCACTTCCTTCTTGCCGCCGAACATCTTCCCGAAGAAACTCATGTC
GACTGATAACT

BS07235.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8055-PA 681 CG8055-RA 1..681 697..17 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
shrb-RA 1267 CG8055-RA 118..799 697..16 3410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9142713..9143000 54..341 1425 99.7 Plus
2R 25286936 2R 9143058..9143238 341..521 905 100 Plus
2R 25286936 2R 9143620..9143797 520..697 890 100 Plus
2R 25286936 2R 9142614..9142656 16..58 215 100 Plus
Blast to na_te.dros performed 2015-02-12 03:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 1580..1648 250..185 122 66.7 Minus

BS07235.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:34 Download gff for BS07235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8055-PA 1..681 17..697 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:21 Download gff for BS07235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8055-PA 1..681 17..697 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:12 Download gff for BS07235.3prime
Subject Subject Range Query Range Percent Splice Strand
shrb-RA 108..799 16..707 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:08 Download gff for BS07235.3prime
Subject Subject Range Query Range Percent Splice Strand
shrb-RA 108..799 16..707 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:08 Download gff for BS07235.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9142614..9142655 16..57 100 <- Plus
2R 9142717..9143000 58..341 100 <- Plus
2R 9143059..9143236 342..519 100 <- Plus
2R 9143620..9143807 520..707 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:12 Download gff for BS07235.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5030119..5030160 16..57 100 <- Plus
arm_2R 5030222..5030505 58..341 100 <- Plus
arm_2R 5030564..5030741 342..519 100 <- Plus
arm_2R 5031125..5031312 520..707 97   Plus

BS07235.5prime Sequence

711 bp (710 high quality bases) assembled on 2006-01-06

> BS07235.5prime
GAAGTTATCAGTCGACATGAGTTTCTTCGGGAAGATGTTCGGCGGCAAGA
AGGAAGTGGCCCCCACCACCGGCGAGGCGATACAGAAGCTGCGCGAGACG
GAGAACATGCTTATCAAAAAGCAGGAGTTCCTGGAGGCCAAGATCGAGGA
CGAACTGAATATAGCCCGCAAGAATGCGTCTAAAAACAAAAGAGTGGCCC
TGCAAGCACTCAAGAAAAAGAAGCGGCTGGAGAAGCAACTCCAGCAGATC
GATGGCACCCTGTCCACAATCGAAATGCAGCGCGAGGCTCTGGAGAGCGC
CAACACAAACACTGCCGTCTTGACCACGATGAAGAATGCCGCGGATGCCC
TCAAGAGAGCCCATCAGAATATGGACGTGGACAAGGTGCACGACATGATG
GATGACATTGCCGAGCAGCAGGACGTGGCCCGCGAGATTTCCGATGCCAT
TTCGAACCCAGTGGCATTCGGCGCCGATCTGGATGATGAGGATCTCGAGC
GGGAACTCGACGAGCTGGAGCAGGAGAACTTTGATAAGGAAATCATTGGC
ATACCCGAGCCGACGCCCACATTGCCAGAAGCACCCACAGAAGATTTGCC
CGAGAAGGCCAAAGAAAAGAAAAAGGCGACAACCACGACTGCCGTGGAGG
ATGATGATGATCCAGACATGAAGCAGCTTTTATCCTGGTCCAACTAAAAG
CTTTCTAGACC

BS07235.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8055-PA 681 CG8055-RA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
shrb-RA 1267 CG8055-RA 118..799 17..698 3410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9142713..9143000 660..373 1425 99.7 Minus
2R 25286936 2R 9143058..9143238 373..193 905 100 Minus
2R 25286936 2R 9143620..9143797 194..17 890 100 Minus
2R 25286936 2R 9142614..9142656 698..656 215 100 Minus
Blast to na_te.dros performed 2015-02-02 10:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 1580..1648 464..529 122 66.7 Plus

BS07235.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:35 Download gff for BS07235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8055-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:22 Download gff for BS07235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8055-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:32:22 Download gff for BS07235.5prime
Subject Subject Range Query Range Percent Splice Strand
shrb-RA 108..799 7..698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:32 Download gff for BS07235.5prime
Subject Subject Range Query Range Percent Splice Strand
shrb-RA 108..799 7..698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:32 Download gff for BS07235.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9142614..9142655 657..698 100 <- Minus
2R 9142717..9143000 373..656 100 <- Minus
2R 9143059..9143236 195..372 100 <- Minus
2R 9143620..9143807 7..194 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:32:22 Download gff for BS07235.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5031125..5031312 7..194 97   Minus
arm_2R 5030119..5030160 657..698 100 <- Minus
arm_2R 5030564..5030741 195..372 100 <- Minus
arm_2R 5030222..5030505 373..656 100 <- Minus

BS07235.complete Sequence

713 bp (713 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635780

> BS07235.complete
GAAGTTATCAGTCGACATGAGTTTCTTCGGGAAGATGTTCGGCGGCAAGA
AGGAAGTGGCCCCCACCACCGGCGAGGCGATACAGAAGCTGCGCGAGACG
GAGAACATGCTTATCAAAAAGCAGGAGTTCCTGGAGGCCAAGATCGAGGA
CGAACTGAATATAGCCCGCAAGAATGCGTCTAAAAACAAAAGAGTGGCCC
TGCAAGCACTCAAGAAAAAGAAGCGGCTGGAGAAGCAACTCCAGCAGATC
GATGGCACCCTGTCCACAATCGAAATGCAGCGCGAGGCTCTGGAGAGCGC
CAACACAAACACTGCCGTCTTGACCACGATGAAGAATGCCGCGGATGCCC
TCAAGAGAGCCCATCAGAATATGGACGTGGACAAGGTGCACGACATGATG
GATGACATTGCCGAGCAGCAGGACGTGGCCCGCGAGATTTCCGATGCCAT
TTCGAACCCAGTGGCATTCGGCGCCGATCTGGATGATGAGGATCTCGAGC
GGGAACTCGACGAGCTGGAGCAGGAGAACTTTGATAAGGAAATCATTGGC
ATACCCGAGCCGACGCCCACATTGCCAGAAGCACCCACAGAAGATTTGCC
CGAGAAGGCCAAAGAAAAGAAAAAGGCGACAACCACGACTGCCGTGGAGG
ATGATGATGATCCAGACATGAAGCAGCTTTTATCCTGGTCCAACTAAAAG
CTTTCTAGACCAT

BS07235.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
shrb-RA 681 CG8055-PA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
shrb-RA 1267 CG8055-RA 118..799 17..698 3410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9142713..9143000 660..373 1425 99.7 Minus
2R 25286936 2R 9143058..9143238 373..193 905 100 Minus
2R 25286936 2R 9143620..9143797 194..17 890 100 Minus
2R 25286936 2R 9142614..9142656 698..656 215 100 Minus
Blast to na_te.dros performed 2014-11-27 20:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 1580..1648 464..529 122 66.7 Plus

BS07235.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:20 Download gff for BS07235.complete
Subject Subject Range Query Range Percent Splice Strand
shrb-RA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:40 Download gff for BS07235.complete
Subject Subject Range Query Range Percent Splice Strand
shrb-RA 104..795 7..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:23 Download gff for BS07235.complete
Subject Subject Range Query Range Percent Splice Strand
shrb-RA 118..796 17..695 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:21 Download gff for BS07235.complete
Subject Subject Range Query Range Percent Splice Strand
shrb-RA 104..795 7..698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:55 Download gff for BS07235.complete
Subject Subject Range Query Range Percent Splice Strand
shrb-RA 118..796 17..695 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:55 Download gff for BS07235.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9142617..9142655 657..695 100 <- Minus
2R 9142717..9143000 373..656 100 <- Minus
2R 9143059..9143236 195..372 100 <- Minus
2R 9143620..9143797 17..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:23 Download gff for BS07235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5030122..5030160 657..695 100 <- Minus
arm_2R 5030222..5030505 373..656 100 <- Minus
arm_2R 5030564..5030741 195..372 100 <- Minus
arm_2R 5031125..5031302 17..194 100   Minus

BS07235.pep Sequence

Translation from 16 to 696

> BS07235.pep
MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIA
RKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTA
VLTTMKNAADALKRAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA
FGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPTEDLPEKAKE
KKKATTTTAVEDDDDPDMKQLLSWSN*

BS07235.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
shrb-PA 226 CG8055-PA 1..226 1..226 1135 100 Plus
Vps20-PC 212 CG4071-PC 2..211 5..211 202 31.8 Plus
Vps20-PA 212 CG4071-PA 2..211 5..211 202 31.8 Plus
Vps60-PB 226 CG6259-PB 5..196 4..193 191 26.7 Plus
Vps60-PA 226 CG6259-PA 5..196 4..193 191 26.7 Plus