Clone Sequence Records
BS07235.3prime Sequence
711 bp (710 high quality bases) assembled on 2006-01-06
> BS07235.3prime
ATGGTCTAGAAAGCTTTTAGTTGGACCAGGATAAAAGCTGCTTCATGTCT
GGATCATCATCATCCTCCACGGCAGTCGTGGTTGTCGCCTTTTTCTTTTC
TTTGGCCTTCTCGGGCAAATCTTCTGTGGGTGCTTCTGGCAATGTGGGCG
TCGGCTCGGGTATGCCAATGATTTCCTTATCAAAGTTCTCCTGCTCCAGC
TCGTCGAGTTCCCGCTCGAGATCCTCATCATCCAGATCGGCGCCGAATGC
CACTGGGTTCGAAATGGCATCGGAAATCTCGCGGGCCACGTCCTGCTGCT
CGGCAATGTCATCCATCATGTCGTGCACCTTGTCCACGTCCATATTCTGA
TGGGCTCTCTTGAGGGCATCCGCGGCATTCTTCATCGTGGTCAAGACGGC
AGTGTTTGTGTTGGCGCTCTCCAGAGCCTCGCGCTGCATTTCGATTGTGG
ACAGGGTGCCATCGATCTGCTGGAGTTGCTTCTCCAGCCGCTTCTTTTTC
TTGAGTGCTTGCAGGGCCACTCTTTTGTTTTTAGACGCATTCTTGCGGGC
TATATTCAGTTCGTCCTCGATCTTGGCCTCCAGGAACTCCTGCTTTTTGA
TAAGCATGTTCTCCGTCTCGCGCAGCTTCTGTATCGCCTCGCCGGTGGTG
GGGGCCACTTCCTTCTTGCCGCCGAACATCTTCCCGAAGAAACTCATGTC
GACTGATAACT
BS07235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8055-PA | 681 | CG8055-RA | 1..681 | 697..17 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shrb-RA | 1267 | CG8055-RA | 118..799 | 697..16 | 3410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9142713..9143000 | 54..341 | 1425 | 99.7 | Plus |
2R | 25286936 | 2R | 9143058..9143238 | 341..521 | 905 | 100 | Plus |
2R | 25286936 | 2R | 9143620..9143797 | 520..697 | 890 | 100 | Plus |
2R | 25286936 | 2R | 9142614..9142656 | 16..58 | 215 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 03:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baggins | 5453 | baggins BAGGINS 5453bp | 1580..1648 | 250..185 | 122 | 66.7 | Minus |
BS07235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:34 Download gff for
BS07235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8055-PA | 1..681 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:21 Download gff for
BS07235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8055-PA | 1..681 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:12 Download gff for
BS07235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shrb-RA | 108..799 | 16..707 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:08 Download gff for
BS07235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shrb-RA | 108..799 | 16..707 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:08 Download gff for
BS07235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9142614..9142655 | 16..57 | 100 | <- | Plus |
2R | 9142717..9143000 | 58..341 | 100 | <- | Plus |
2R | 9143059..9143236 | 342..519 | 100 | <- | Plus |
2R | 9143620..9143807 | 520..707 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:12 Download gff for
BS07235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5030119..5030160 | 16..57 | 100 | <- | Plus |
arm_2R | 5030222..5030505 | 58..341 | 100 | <- | Plus |
arm_2R | 5030564..5030741 | 342..519 | 100 | <- | Plus |
arm_2R | 5031125..5031312 | 520..707 | 97 | | Plus |
BS07235.5prime Sequence
711 bp (710 high quality bases) assembled on 2006-01-06
> BS07235.5prime
GAAGTTATCAGTCGACATGAGTTTCTTCGGGAAGATGTTCGGCGGCAAGA
AGGAAGTGGCCCCCACCACCGGCGAGGCGATACAGAAGCTGCGCGAGACG
GAGAACATGCTTATCAAAAAGCAGGAGTTCCTGGAGGCCAAGATCGAGGA
CGAACTGAATATAGCCCGCAAGAATGCGTCTAAAAACAAAAGAGTGGCCC
TGCAAGCACTCAAGAAAAAGAAGCGGCTGGAGAAGCAACTCCAGCAGATC
GATGGCACCCTGTCCACAATCGAAATGCAGCGCGAGGCTCTGGAGAGCGC
CAACACAAACACTGCCGTCTTGACCACGATGAAGAATGCCGCGGATGCCC
TCAAGAGAGCCCATCAGAATATGGACGTGGACAAGGTGCACGACATGATG
GATGACATTGCCGAGCAGCAGGACGTGGCCCGCGAGATTTCCGATGCCAT
TTCGAACCCAGTGGCATTCGGCGCCGATCTGGATGATGAGGATCTCGAGC
GGGAACTCGACGAGCTGGAGCAGGAGAACTTTGATAAGGAAATCATTGGC
ATACCCGAGCCGACGCCCACATTGCCAGAAGCACCCACAGAAGATTTGCC
CGAGAAGGCCAAAGAAAAGAAAAAGGCGACAACCACGACTGCCGTGGAGG
ATGATGATGATCCAGACATGAAGCAGCTTTTATCCTGGTCCAACTAAAAG
CTTTCTAGACC
BS07235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8055-PA | 681 | CG8055-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shrb-RA | 1267 | CG8055-RA | 118..799 | 17..698 | 3410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9142713..9143000 | 660..373 | 1425 | 99.7 | Minus |
2R | 25286936 | 2R | 9143058..9143238 | 373..193 | 905 | 100 | Minus |
2R | 25286936 | 2R | 9143620..9143797 | 194..17 | 890 | 100 | Minus |
2R | 25286936 | 2R | 9142614..9142656 | 698..656 | 215 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 10:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baggins | 5453 | baggins BAGGINS 5453bp | 1580..1648 | 464..529 | 122 | 66.7 | Plus |
BS07235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:35 Download gff for
BS07235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8055-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:22 Download gff for
BS07235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8055-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:32:22 Download gff for
BS07235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shrb-RA | 108..799 | 7..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:32 Download gff for
BS07235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shrb-RA | 108..799 | 7..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:32 Download gff for
BS07235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9142614..9142655 | 657..698 | 100 | <- | Minus |
2R | 9142717..9143000 | 373..656 | 100 | <- | Minus |
2R | 9143059..9143236 | 195..372 | 100 | <- | Minus |
2R | 9143620..9143807 | 7..194 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:32:22 Download gff for
BS07235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5031125..5031312 | 7..194 | 97 | | Minus |
arm_2R | 5030119..5030160 | 657..698 | 100 | <- | Minus |
arm_2R | 5030564..5030741 | 195..372 | 100 | <- | Minus |
arm_2R | 5030222..5030505 | 373..656 | 100 | <- | Minus |
BS07235.complete Sequence
713 bp (713 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635780
> BS07235.complete
GAAGTTATCAGTCGACATGAGTTTCTTCGGGAAGATGTTCGGCGGCAAGA
AGGAAGTGGCCCCCACCACCGGCGAGGCGATACAGAAGCTGCGCGAGACG
GAGAACATGCTTATCAAAAAGCAGGAGTTCCTGGAGGCCAAGATCGAGGA
CGAACTGAATATAGCCCGCAAGAATGCGTCTAAAAACAAAAGAGTGGCCC
TGCAAGCACTCAAGAAAAAGAAGCGGCTGGAGAAGCAACTCCAGCAGATC
GATGGCACCCTGTCCACAATCGAAATGCAGCGCGAGGCTCTGGAGAGCGC
CAACACAAACACTGCCGTCTTGACCACGATGAAGAATGCCGCGGATGCCC
TCAAGAGAGCCCATCAGAATATGGACGTGGACAAGGTGCACGACATGATG
GATGACATTGCCGAGCAGCAGGACGTGGCCCGCGAGATTTCCGATGCCAT
TTCGAACCCAGTGGCATTCGGCGCCGATCTGGATGATGAGGATCTCGAGC
GGGAACTCGACGAGCTGGAGCAGGAGAACTTTGATAAGGAAATCATTGGC
ATACCCGAGCCGACGCCCACATTGCCAGAAGCACCCACAGAAGATTTGCC
CGAGAAGGCCAAAGAAAAGAAAAAGGCGACAACCACGACTGCCGTGGAGG
ATGATGATGATCCAGACATGAAGCAGCTTTTATCCTGGTCCAACTAAAAG
CTTTCTAGACCAT
BS07235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shrb-RA | 681 | CG8055-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shrb-RA | 1267 | CG8055-RA | 118..799 | 17..698 | 3410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9142713..9143000 | 660..373 | 1425 | 99.7 | Minus |
2R | 25286936 | 2R | 9143058..9143238 | 373..193 | 905 | 100 | Minus |
2R | 25286936 | 2R | 9143620..9143797 | 194..17 | 890 | 100 | Minus |
2R | 25286936 | 2R | 9142614..9142656 | 698..656 | 215 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baggins | 5453 | baggins BAGGINS 5453bp | 1580..1648 | 464..529 | 122 | 66.7 | Plus |
BS07235.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:20 Download gff for
BS07235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shrb-RA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:40 Download gff for
BS07235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shrb-RA | 104..795 | 7..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:23 Download gff for
BS07235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shrb-RA | 118..796 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:21 Download gff for
BS07235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shrb-RA | 104..795 | 7..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:55 Download gff for
BS07235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shrb-RA | 118..796 | 17..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:55 Download gff for
BS07235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9142617..9142655 | 657..695 | 100 | <- | Minus |
2R | 9142717..9143000 | 373..656 | 100 | <- | Minus |
2R | 9143059..9143236 | 195..372 | 100 | <- | Minus |
2R | 9143620..9143797 | 17..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:23 Download gff for
BS07235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5030122..5030160 | 657..695 | 100 | <- | Minus |
arm_2R | 5030222..5030505 | 373..656 | 100 | <- | Minus |
arm_2R | 5030564..5030741 | 195..372 | 100 | <- | Minus |
arm_2R | 5031125..5031302 | 17..194 | 100 | | Minus |
BS07235.pep Sequence
Translation from 16 to 696
> BS07235.pep
MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIA
RKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTA
VLTTMKNAADALKRAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA
FGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPTEDLPEKAKE
KKKATTTTAVEDDDDPDMKQLLSWSN*
BS07235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shrb-PA | 226 | CG8055-PA | 1..226 | 1..226 | 1135 | 100 | Plus |
Vps20-PC | 212 | CG4071-PC | 2..211 | 5..211 | 202 | 31.8 | Plus |
Vps20-PA | 212 | CG4071-PA | 2..211 | 5..211 | 202 | 31.8 | Plus |
Vps60-PB | 226 | CG6259-PB | 5..196 | 4..193 | 191 | 26.7 | Plus |
Vps60-PA | 226 | CG6259-PA | 5..196 | 4..193 | 191 | 26.7 | Plus |