Clone Sequence Records
BS07236.3prime Sequence
907 bp (809 high quality bases) assembled on 2006-01-06
> BS07236.3prime
ATGGTCTAGAAAGCTTCTAAAAGCAGAGCCGCTTGAGCGAGTTCTTCCTT
GTGATTTTCGGATCACGGTTCTGGGCACGTTGTGGCGGCGTCAGTCGCTC
CCGTGGCATCATCAGTTTGGATGGTGTGTCCAGTTCGGTGACCAGGCAAC
GCTCGCCGGGATGCGACTTGCACAGACAGTTGACGCAGAACCGAAACTGG
CAGATGACACTGGTGCATTCGGCGAAGTTATATGGCGGTCCTTGCGGTGA
AGTCCTGACCTCGTCAAGATCCAGGGACAGGAAGCGTTTGAGAGGCGGAC
CCGTCATGCAGGGGAATGTGCTGGTTGTACGTCCAATAGGCAGAGTTTGC
GACAATAGGTTTTCGCCACACTTGGCCGCCTCGCTTATGAAAACCCGGCT
GCCTCGACCGCATCGCGGACACTTGACGCGCTGCGTCTGCTCGCGCAGCA
CCCTTCCGGCATCCACGTCCATCAGGTGGATGCTCGAGTTGCCCGAGTCC
ATTAGCGAGGCGGCGCTGTTGGCCAGGCTGCTATGGTTCGAGGTCTGCAA
TGGCACTGTGTGGTTTGCCTTGGGCACATGGCTGCACCGCTTGGGCACGT
GAGGATTCTCTTTGGTTAGATTCAATTTGAGTCGGTGGTTCTGTAGGCGC
TCCAAGTCGCGTTGGCTGCGATAAACAGCCTGCTTCCAGGCCGGCGATAC
CTTGGTCATCACGTCCAGCGTGTGGGCGCCCACATGACGCAGTATGCACT
GCAGTGCCGGTTGCCATTGCGCCAGCTTGGCCACGATATCCAGCTTTTCG
ACACCGCCGTAGAAGCGATTCTTGGGCGGTTCTTCTATGTGGGGAAAGAG
CAGCTTTTTGGACTTCTTGGGGCTACTGTGTGGCGATTGAAAGTGTTTCT
TGCGTCG
BS07236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10800-PA | 1236 | Rca1-RA | 346..1236 | 907..17 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-RA | 1552 | CG10800-RA | 453..1343 | 907..17 | 4455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6852767..6853657 | 907..17 | 4455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 12:12:48 has no hits.
BS07236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:36 Download gff for
BS07236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-PA | 346..1236 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:24 Download gff for
BS07236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10800-PA | 346..1236 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:36 Download gff for
BS07236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 453..1347 | 10..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:27 Download gff for
BS07236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 453..1347 | 10..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:27 Download gff for
BS07236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6852767..6853661 | 10..907 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:36 Download gff for
BS07236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6852767..6853661 | 10..907 | 99 | | Minus |
BS07236.5prime Sequence
812 bp (744 high quality bases) assembled on 2006-01-06
> BS07236.5prime
GAAGTTATCAGTCGACATGAGCGCCTATTATCGGCGCGCGGCGTTGCGGA
AGAAGAGCCCAAGCCGAGGGTCATCCTTCGAGTTGGAGATGAACGAGTCT
GGCTACACATCCTTCCTGGCGCTGCACAATTCCACCGCGGAGACGCCATT
TTTATTGGAGGACGCTGAGGGCGAAAACTGTCGCAATGCATCGAATACCA
CAACATTCTTTCGGGGGCTGAACACGCCCAGTGGCCACCAGGAGCAGGAC
CTTTACTGGGGCAAGCCCTATCCCAGAACACAGCCCCAAAAGAAATTTTC
CGCGGAGGAGGAGCCTTTCTCTATGACTCCGCGTCTGCAGGATGAGCATA
GTCTGCCCAAGCGACGCAAGAAACACTTTCAATCGCCACACAGTAGCCCC
AAGAAGTCCAAAAAGCTGCTCTTTCCCCACATAGAAGAACCGCCCAAGAA
TCGCTTCTACGGCGGTGTCGAAAAGCTGGATATCGTGGCCAAGCTGGCGC
AATGGCAACCGGCACTGCAGTGCATACTGCGTCATGTGGGCGCCCACACG
CTGGACGTGATGACCAAGGTATCGCCGGCCTGGAAGCAGGCTGTTTATCG
CAGCCAACGCGACTTGGAGCGCCTACAGAACCACCGACTCAAATTGAATC
TAACCAAAGAGAATCCTCACGTGCCCAAGCGGTGCAGCCATGTGCCCAAG
GCAAACCACACAGTGCCATTGCAGACCTCGAACCATAGCAGCCTGGCCAA
CAGCGCCGCCTCGCTAATGGACTCGGGCAACTCGAGCATCCACCTGATGG
ACGTGGATGCCG
BS07236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10800-PA | 1236 | Rca1-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-RA | 1552 | CG10800-RA | 108..903 | 17..812 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6852422..6853217 | 17..812 | 3980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:39:35 has no hits.
BS07236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:37 Download gff for
BS07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:26 Download gff for
BS07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10800-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:36 Download gff for
BS07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 99..903 | 8..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:02:34 Download gff for
BS07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 99..903 | 8..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:02:34 Download gff for
BS07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6852413..6853217 | 8..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:36 Download gff for
BS07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6852413..6853217 | 8..812 | 99 | | Plus |
BS07236.complete Sequence
1268 bp (1268 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635781
> BS07236.complete
GAAGTTATCAGTCGACATGAGCGCCTATTATCGGCGCGCGGCGTTGCGGA
AGAAGAGCCCAAGCCGAGGGTCATCCTTCGAGTTGGAGATGAACGAGTCT
GGCTACACATCCTTCCTGGCGCTGCACAATTCCACCGCGGAGACGCCATT
TTTATTGGAGGACGCTGAGGGCGAAAACTGTCGCAATGCATCGAATACCA
CAACATTCTTTCGGGGGCTGAACACGCCCAGTGGCCACCAGGAGCAGGAC
CTTTACTGGGGCAAGCCCTATCCCAGAACACAGCCCCAAAAGAAATTTTC
CGCGGAGGAGGAGCCTTTCTCTATGACTCCGCGTCTGCAGGATGAGCATA
GTCTGCCCAAGCGACGCAAGAAACACTTTCAATCGCCACACAGTAGCCCC
AAGAAGTCCAAAAAGCTGCTCTTTCCCCACATAGAAGAACCGCCCAAGAA
TCGCTTCTACGGCGGTGTCGAAAAGCTGGATATCGTGGCCAAGCTGGCGC
AATGGCAACCGGCACTGCAGTGCATACTGCGTCATGTGGGCGCCCACACG
CTGGACGTGATGACCAAGGTATCGCCGGCCTGGAAGCAGGCTGTTTATCG
CAGCCAACGCGACTTGGAGCGCCTACAGAACCACCGACTCAAATTGAATC
TAACCAAAGAGAATCCTCACGTGCCCAAGCGGTGCAGCCATGTGCCCAAG
GCAAACCACACAGTGCCATTGCAGACCTCGAACCATAGCAGCCTGGCCAA
CAGCGCCGCCTCGCTAATGGACTCGGGCAACTCGAGCATCCACCTGATGG
ACGTGGATGCCGGAAGGGTGCTGCGCGAGCAGACGCAGCGCGTCAAGTGT
CCGCGATGCGGTCGAGGCAGCCGGGTTTTCATAAGCGAGGCGGCCAAGTG
TGGCGAAAACCTATTGTCGCAAACTCTGCCTATTGGACGTACAACCAGCA
CATTCCCCTGCATGACGGGTCCGCCTCTCAAACGCTTCCTGTCCCTGGAT
CTTGACGAGGTCAGGACTTCACCGCAAGGACCGCCATATAACTTCGCCGA
ATGCACCAGTGTCATCTGCCAGTTTCGGTTCTGCGTCAACTGTCTGTGCA
AGTCGCATCCCGGCGAGCGTTGCCTGGTCACCGAACTGGACACACCATCC
AAACTGATGATGCCACGGGAGCGACTGACGCCGCCACAACGTGCCCAGAA
CCGTGATCCGAAAATCACAAGGAAGAACTCGCTCAAGCGGCTCTGCTTTT
AGAAGCTTTCTAGACCAT
BS07236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-RA | 1236 | CG10800-PA | 1..1236 | 17..1252 | 6180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-RA | 1552 | CG10800-RA | 108..1343 | 17..1252 | 6180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6852422..6853657 | 17..1252 | 6180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:39:09 has no hits.
BS07236.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:53 Download gff for
BS07236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 1..1236 | 17..1252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:13 Download gff for
BS07236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 90..1338 | 8..1259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:20 Download gff for
BS07236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 108..1343 | 17..1252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:54 Download gff for
BS07236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 90..1338 | 8..1259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:15 Download gff for
BS07236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 108..1343 | 17..1252 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:15 Download gff for
BS07236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6852422..6853657 | 17..1252 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:20 Download gff for
BS07236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6852422..6853657 | 17..1252 | 100 | | Plus |
BS07236.pep Sequence
Translation from 16 to 1251
> BS07236.pep
MSAYYRRAALRKKSPSRGSSFELEMNESGYTSFLALHNSTAETPFLLEDA
EGENCRNASNTTTFFRGLNTPSGHQEQDLYWGKPYPRTQPQKKFSAEEEP
FSMTPRLQDEHSLPKRRKKHFQSPHSSPKKSKKLLFPHIEEPPKNRFYGG
VEKLDIVAKLAQWQPALQCILRHVGAHTLDVMTKVSPAWKQAVYRSQRDL
ERLQNHRLKLNLTKENPHVPKRCSHVPKANHTVPLQTSNHSSLANSAASL
MDSGNSSIHLMDVDAGRVLREQTQRVKCPRCGRGSRVFISEAAKCGENLL
SQTLPIGRTTSTFPCMTGPPLKRFLSLDLDEVRTSPQGPPYNFAECTSVI
CQFRFCVNCLCKSHPGERCLVTELDTPSKLMMPRERLTPPQRAQNRDPKI
TRKNSLKRLCF*
BS07236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-PA | 411 | CG10800-PA | 1..411 | 1..411 | 2198 | 100 | Plus |
