Clone Sequence Records
BS07242.3prime Sequence
938 bp (803 high quality bases) assembled on 2006-01-06
> BS07242.3prime
ATGGTCTAGAAAGCTTTCAGAAATCTTGGATCCATCGTGCTATGATGGCT
GCTTCCTTATCGCGGGCATCGCGCACAGAAGGTGGATCGGCCGGATCGCT
GTGGCGCAAGTCCAAGTGATGGGCTCCCTCGGGCAGGATGATGACGAAGA
CCTTGTCGTTGGGAGCCTGAAGCACACCGCCACCGCTCCAGGGATCCAGA
AGACCGTTGCTGAAGATGATGTTGGTCGCAGCCTCCAGGTTTCTGCCGCC
ATAGCGCAGAATGATGTCGTATGGCTTGGGGGTGAGACGGTAGTTCTTGT
AGCACTTTTCCGCGTAATCCTTGAAGTTCCAGCTGGACGTGCGGAACATG
GTTTCGGAGCCATTGGAGCAGATGGGCATCACCATCTGGTTGCAGCTCTG
GATATTCCAACCGGAGTCATCGGCGTTGGAGTTGACGGATATATCGAGGC
ACTTGGCGGACTGTGTGTAGTTGGTGTAGACAGCCAAAGCGCTGGACATG
GCGTGCAGCAAATCGGCGTCGGTGGAATGCAGCTCCTTCAGGTAGTAGCA
CACCTGCCTCACGGGATAGGCAGGTAATGGGGCCAGGAAACTGCTGTTGT
ACGGGTAATTGACCATGGCGAGATTGCTGTACACCTCCTCCACGTAGTCC
AGGAACTTCTTCAGATCGTCGTCGTTCTTCAGGGCATTGCATAGGTGGAA
TGCATCCGATATCTGCTTCTTGCCGGCCTCGCTGGCGCCCAGAGTCTCGA
AGAGTTTCCACGACTTGGCAATATTCAAGGTGCAGTTTTCGTTGTAGGCA
TTCTGGAACACCGATGTCACAATCCTGTAGAAGATGTCGCAATCGGTTAT
CCCGGGGAACTGCAGAACGGGCGCCGAGGCTGCCAGGGCTCCGTTGACCA
AATGCGGATACTTCATCCGGACCCAGCGGCCAGCATTC
BS07242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2493-PA | 1428 | CG2493-RA | 524..1428 | 921..17 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2493-RB | 1677 | CG2493-RB | 580..1503 | 938..16 | 4580 | 99.8 | Minus |
| CG2493-RA | 1860 | CG2493-RA | 580..1503 | 938..16 | 4580 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20461942..20462865 | 16..938 | 4555 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:06:33 has no hits.
BS07242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:50 Download gff for
BS07242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-PA | 506..1428 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:44 Download gff for
BS07242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-PA | 506..1428 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:20:40 Download gff for
BS07242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-RA | 580..1505 | 13..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:53 Download gff for
BS07242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-RA | 580..1505 | 13..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:53 Download gff for
BS07242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20461940..20462865 | 13..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:20:40 Download gff for
BS07242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20461940..20462865 | 13..938 | 99 | | Plus |
BS07242.5prime Sequence
918 bp (818 high quality bases) assembled on 2006-01-06
> BS07242.5prime
GAAGTTATCAGTCGACATGATTCTTCGCGATATGGGAGAAGCCACAGTGA
GAGCTGCACTGTTAGCGGTTTTGGGAATCCTGCTGATCGCGGGCTGTGAT
TGCAGCCAGCGGTTCAAGTACGAGATCAAGGAGTTCCAGGTGCCGCTGGA
CCATTTCAGCTTCCTGATCAACGCCACCTTCAACATCCGGTACTTGTACA
ACGACTCGTTCGTGGACAAGAGCAATGCCCGCACCCCGATTTTCTTCTAC
ACGGGCAACGAGGGGGACATCGAACTCTTCGCCCAGAATACCGGATTCCT
GTGGGAGCAGGCGGAACGACAGCGGGCTCTGGTGATCTTTGCGGAGCATC
GTTACTATGGAAAGTCATTGCCCTTCGGTAGCTCCACGTTCAACACCAGC
CTGCCGGAGCACTTGGCTTACTTCACAGTGGAGCAGACGCTCGAGGACTA
CGCCATGCTGATCACGTTCCTGCGGAACGATCGCCAGATGCCCGTGGTGG
CCTTCGGGGGCTCCTATGGCGGAATGCTGGCCGCCTGGTTCCGGATGAAG
TATCCGCATTTGGTCAACGGAGCCCTGGCAGCCTCGGCGCCCGTTCTGCA
GTTCCCCGGGATAACCGATTGCGACATCTTCTACAGGATTGTGACATCGG
TGTTCCAGAATGCCTACAACGAAAACTGCACCTTGAATATTGCCAAGTCG
TGGAAACTCTTCGAGACTCTGGGCGCCAGCGAGGCCGGCAAGAAGCAGAT
ATCGGATGCATTCCACCTATGCAATGCCCTGAAGAACGACGACGATCTGA
AGAAGTTCCTGGACTACGTGGAGGAGGTGTACAGCAATCTCGCCATGGTC
AATTACCCGTACAACAGCAGTTTCCTGGCCCCATTACCTGCCCTATCCGT
GAGGCANGTGTGCTACTA
BS07242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2493-PA | 1428 | CG2493-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2493-RB | 1677 | CG2493-RB | 75..976 | 17..918 | 4454 | 99.7 | Plus |
| CG2493-RA | 1860 | CG2493-RA | 75..976 | 17..918 | 4454 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20462469..20463370 | 918..17 | 4439 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:25:51 has no hits.
BS07242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:51 Download gff for
BS07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:45 Download gff for
BS07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:03 Download gff for
BS07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-RA | 70..975 | 11..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:48 Download gff for
BS07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-RA | 70..975 | 11..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:48 Download gff for
BS07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20462470..20463375 | 11..917 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:03 Download gff for
BS07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20462470..20463375 | 11..917 | 99 | | Minus |
BS07242.complete Sequence
1460 bp (1460 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635782
> BS07242.complete
GAAGTTATCAGTCGACATGATTCTTCGCGATATGGGAGAAGCCACAGTGA
GAGCTGCACTGTTAGCGGTTTTGGGAATCCTGCTGATCGCGGGCTGTGAT
TGCAGCCAGCGGTTCAAGTACGAGATCAAGGAGTTCCAGGTGCCGCTGGA
CCATTTCAGCTTCCTGATCAACGCCACCTTCAACATCCGGTACTTGTACA
ACGACTCGTTCGTGGACAAGAGCAATGCCCGCACCCCGATTTTCTTCTAC
ACGGGCAACGAGGGGGACATCGAACTCTTCGCCCAGAATACCGGATTCCT
GTGGGAGCAGGCGGAACGACAGCGGGCTCTGGTGATCTTTGCGGAGCATC
GTTACTATGGAAAGTCATTGCCCTTCGGTAGCTCCACGTTCAACACCAGC
CTGCCGGAGCACTTGGCTTACTTCACAGTGGAGCAGACGCTCGAGGACTA
CGCCATGCTGATCACGTTCCTGCGGAACGATCGCCAGATGCCCGTGGTGG
CCTTCGGGGGCTCCTATGGCGGAATGCTGGCCGCCTGGTTCCGGATGAAG
TATCCGCATTTGGTCAACGGAGCCCTGGCAGCCTCGGCGCCCGTTCTGCA
GTTCCCCGGGATAACCGATTGCGACATCTTCTACAGGATTGTGACATCGG
TGTTCCAGAATGCCTACAACGAAAACTGCACCTTGAATATTGCCAAGTCG
TGGAAACTCTTCGAGACTCTGGGCGCCAGCGAGGCCGGCAAGAAGCAGAT
ATCGGATGCATTCCACCTATGCAATGCCCTGAAGAACGACGACGATCTGA
AGAAGTTCCTGGACTACGTGGAGGAGGTGTACAGCAATCTCGCCATGGTC
AATTACCCGTACAACAGCAGTTTCCTGGCCCCATTACCTGCCTATCCCGT
GAGGCAGGTGTGCTACTACCTGAAGGAGCTGCATTCCACCGACGCCGATT
TGCTGCACGCCATGTCCAGCGCTTTGGCTGTCTACACCAACTACACACAG
TCCGCCAAGTGCCTCGATATATCCGTCAACTCCAACGCCGATGACTCCGG
TTGGAATATCCAGAGCTGCAACCAGATGGTGATGCCCATCTGCTCCAATG
GCTCCGAAACCATGTTCCGCACGTCCAGCTGGAACTTCAAGGATTACGCG
GAAAAGTGCTACAAGAACTACCGTCTCACCCCCAAGCCATACGACATCAT
TCTGCGCTATGGCGGCAGAAACCTGGAGGCTGCGACCAACATCATCTTCA
GCAACGGTCTTCTGGATCCCTGGAGCGGTGGCGGTGTGCTTCAGGCTCCC
AACGACAAGGTCTTCGTCATCATCCTGCCCGAGGGAGCCCATCACTTGGA
CTTGCGCCACAGCGATCCGGCCGATCCACCTTCTGTGCGCGATGCCCGCG
ATAAGGAAGCAGCCATCATAGCACGATGGATCCAAGATTTCTGAAAGCTT
TCTAGACCAT
BS07242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2493-RB | 1428 | CG2493-PB | 1..1428 | 17..1444 | 7140 | 100 | Plus |
| CG2493-RA | 1428 | CG2493-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2493-RB | 1677 | CG2493-RB | 75..1503 | 17..1445 | 7145 | 100 | Plus |
| CG2493-RA | 1860 | CG2493-RA | 75..1503 | 17..1445 | 7145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20461942..20463370 | 1445..17 | 7145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:46:49 has no hits.
BS07242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:02 Download gff for
BS07242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-RA | 1..1428 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:26 Download gff for
BS07242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-RA | 75..1510 | 11..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:48 Download gff for
BS07242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-RA | 75..1501 | 17..1443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:02 Download gff for
BS07242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-RA | 75..1510 | 11..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:41 Download gff for
BS07242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2493-RA | 75..1501 | 17..1443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:41 Download gff for
BS07242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20461944..20463370 | 17..1443 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:48 Download gff for
BS07242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20461944..20463370 | 17..1443 | 100 | | Minus |
BS07242.pep Sequence
Translation from 16 to 1443
> BS07242.pep
MILRDMGEATVRAALLAVLGILLIAGCDCSQRFKYEIKEFQVPLDHFSFL
INATFNIRYLYNDSFVDKSNARTPIFFYTGNEGDIELFAQNTGFLWEQAE
RQRALVIFAEHRYYGKSLPFGSSTFNTSLPEHLAYFTVEQTLEDYAMLIT
FLRNDRQMPVVAFGGSYGGMLAAWFRMKYPHLVNGALAASAPVLQFPGIT
DCDIFYRIVTSVFQNAYNENCTLNIAKSWKLFETLGASEAGKKQISDAFH
LCNALKNDDDLKKFLDYVEEVYSNLAMVNYPYNSSFLAPLPAYPVRQVCY
YLKELHSTDADLLHAMSSALAVYTNYTQSAKCLDISVNSNADDSGWNIQS
CNQMVMPICSNGSETMFRTSSWNFKDYAEKCYKNYRLTPKPYDIILRYGG
RNLEAATNIIFSNGLLDPWSGGGVLQAPNDKVFVIILPEGAHHLDLRHSD
PADPPSVRDARDKEAAIIARWIQDF*
BS07242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2493-PB | 475 | CG2493-PB | 1..475 | 1..475 | 2519 | 100 | Plus |
| CG2493-PA | 475 | CG2493-PA | 1..475 | 1..475 | 2519 | 100 | Plus |
| CG9953-PA | 508 | CG9953-PA | 59..503 | 40..475 | 328 | 25.7 | Plus |
| CG18493-PA | 480 | CG18493-PA | 49..479 | 30..472 | 318 | 24.9 | Plus |
| CG3734-PB | 473 | CG3734-PB | 54..473 | 44..473 | 311 | 23.6 | Plus |
