Clone Sequence Records
BS07244.3prime Sequence
870 bp (830 high quality bases) assembled on 2006-01-06
> BS07244.3prime
ATGGTCTAGAAAGCTTCTACGTCTGGCTTTCATTCAGTATTGCCTTGATG
TCGTCGGCGTCAAGAGTCTCGTACTTGAGAAGCGCCTCCGCAAGCGCTTT
GTGCTCCCTGGTGTGTTTTCGCAGGATAGCCTTCGCCCGCTCGTAGCTGT
CGCTGAGGATGCGCTTGATCTCCGCGTCCACGGCTTCAATGGTGTTGGGA
CCAAGGGTGTCACCGGTGCCCAGACCCTTTGACGCCTCGATGGTGCGAAG
ACCGACCTTGTCCGACATGCCCCAGTCCCTGACCATATGCGTCGCGATCG
AGGTTGCCTGCTTGAGATCACTGCTGGCTCCCGACGTAATCTTGTCCGTG
CCGAAGACCAGTTCCTCAGCAGCACGACCGCCCATCATGGTGTCCATCAT
GGCCAGCAGCTGTGCCTTTGTGACATGGTAACGCTCCTTCTCCGGTATGT
AGGCGGTGTGTCCAAGGGAGGGTCCGCGGGGCATGATGGTCACCTTGTGC
AGCGGATGCGACTCCTTGGTGTAGAAGGCCACAATCGCGTGGCCGCCCTC
GTGGTAAGCGGTTATGGTGTTGGCCTCCTCGTCCGGTAGACGAGCCTTGC
GCTCGGGTCCCATAAGTACTTTGTCTCGTGCCGTTTCCAAATGCTTCATG
CTGACCGTTTCGGCTCCATCGATGGCAGCTCTTAACGCCGCTTGGTTAAT
CATGTTTTCCAGATCCGCTCCAGTAAAACCAGAGGTGCCGCGCGCCAGCA
TGTCCAAGTCTATTTCATCGTGCAAAATCTTCGTCAGATACAGAGACAAT
ATCTCCTTACGTCCAGTGAAATCGGGCGTCGACACAATGACTTCTACATC
AAATCGGCCGGGGACGCAGC
BS07244.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-PB | 2211 | CG3499-RB | 1366..2211 | 862..17 | 4205 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-RC | 2515 | CG3499-RC | 1477..2329 | 870..17 | 4230 | 99.8 | Minus |
CG3499-RD | 2940 | CG3499-RD | 1673..2525 | 870..17 | 4230 | 99.8 | Minus |
CG3499-RB | 2503 | CG3499-RB | 1465..2317 | 870..17 | 4230 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22883162..22883827 | 17..682 | 3330 | 100 | Plus |
2R | 25286936 | 2R | 22883901..22884082 | 681..862 | 895 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:17:12 has no hits.
BS07244.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:54 Download gff for
BS07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-PB | 1359..2211 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:51 Download gff for
BS07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-PB | 1359..2211 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:47 Download gff for
BS07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 1465..2317 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:57:42 Download gff for
BS07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 1465..2317 | 17..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:57:42 Download gff for
BS07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22883162..22883825 | 17..680 | 100 | <- | Plus |
2R | 22883901..22884089 | 681..870 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:47 Download gff for
BS07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18770685..18771348 | 17..680 | 100 | <- | Plus |
arm_2R | 18771424..18771612 | 681..870 | 98 | | Plus |
BS07244.5prime Sequence
869 bp (742 high quality bases) assembled on 2006-01-06
> BS07244.5prime
GAAGTTATCAGTCGACATGTTTTCCACCACCACACACTCCGTGCCCTACC
TGTACCTAGGCAACTTCAGCAGAAAGCCGCACTACTACTCCGTTAATCGA
ACCAAGCTGCACGGGAGCGCGGGAGCTGCCCGGTTGTCCAAGTCCACGTC
CACGTCCAGCCGGAGTCATGACCTAGTGCTCGACCTGCGGAACCTGCTGA
GCCGTTCGAGCGCCAGTATACAGGGCATGGTGGAGAGGGCGGCTCGACTG
AATGGCATTCTCGACCGGCGGCTGGTCGATGATGTGCTGGCCAAGGTGAC
GAGCATGCTGCCCTCCATGCGCGATGTCCGAGTCACGTTGGAGGAGTCGG
CCACACAGATCGGTCGTGTCCAGCTGCAAAATTATCAGTTCGAAGTTTCG
CTAACCGGTGCAGCAGGTTCCGTGCCCACAGGCGCCAATGTCAAGGTGAT
TCCAACTATTACACCAGGTCTTCTTCGTCCGCTCTTCTCACAACAACAGC
TAAATCAGATACGTGGCTTTAAGACGGATCGTTCCATTGAGGCGGAACAA
AAGCGCAATCCCACAATGACCTCCCGACTAAAGAATGCTCTGGCCAACTC
GCCCCAGCGTCTGGATGGGGACACACCCCTTCAGGCTGAAAAACTGAGAC
GGCTGCTGGCCAAATCCGAAGAGCATGGATTTAATAAAGCCGAGAGCCTG
AAAATTGCCTTTGCCGAGGGCTACTTGGCCGCCGCTAACTCGGAGGACTC
TCCAAAATCAGGAAAAACTATGAAATATCTGAAGACTATCGTCGTTATCG
TCGTGTTCTTGGGCATTTTCCTGAGCTTCTTTACAACCTCCAATGGATCC
GTATTTCGCATACAACTGG
BS07244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-PB | 2211 | CG3499-RB | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-RB | 2503 | CG3499-RB | 107..959 | 17..869 | 4265 | 100 | Plus |
CG3499-RD | 2940 | CG3499-RD | 306..1167 | 17..869 | 4165 | 99 | Plus |
CG3499-RC | 2515 | CG3499-RC | 107..971 | 17..869 | 4125 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22885414..22885812 | 441..43 | 1995 | 100 | Minus |
2R | 25286936 | 2R | 22885053..22885243 | 692..502 | 955 | 100 | Minus |
2R | 25286936 | 2R | 22884908..22885000 | 784..692 | 465 | 100 | Minus |
2R | 25286936 | 2R | 22884720..22884795 | 858..783 | 380 | 100 | Minus |
2R | 25286936 | 2R | 22885297..22885356 | 501..442 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:28:06 has no hits.
BS07244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:55 Download gff for
BS07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-PB | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:52 Download gff for
BS07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-PB | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:17 Download gff for
BS07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 107..959 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:13:31 Download gff for
BS07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 107..959 | 17..869 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:13:31 Download gff for
BS07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22884720..22884793 | 785..858 | 100 | <- | Minus |
2R | 22884908..22885000 | 692..784 | 100 | <- | Minus |
2R | 22885054..22885243 | 502..691 | 100 | <- | Minus |
2R | 22885297..22885356 | 442..501 | 100 | <- | Minus |
2R | 22885414..22885811 | 44..441 | 100 | <- | Minus |
2R | 22885916..22885942 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:17 Download gff for
BS07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18772243..18772316 | 785..858 | 100 | <- | Minus |
arm_2R | 18772431..18772523 | 692..784 | 100 | <- | Minus |
arm_2R | 18772577..18772766 | 502..691 | 100 | <- | Minus |
arm_2R | 18772820..18772879 | 442..501 | 100 | <- | Minus |
arm_2R | 18772937..18773334 | 44..441 | 100 | <- | Minus |
arm_2R | 18773439..18773465 | 17..43 | 100 | | Minus |
BS07244.complete Sequence
2243 bp assembled on 2008-01-02
GenBank Submission: FJ635783
> BS07244.complete
GAAGTTATCAGTCGACATGTTTTCCACCACCACACACTCCGTGCCCTACC
TGTACCTAGGCAACTTCAGCAGAAAGCCGCACTACTACTCCGTTAATCGA
ACCAAGCTGCACGGGAGCGCGGGAGCTGCCCGGTTGTCCAAGTCCACGTC
CACGTCCAGCCGGAGTCATGACCTAGTGCTCGACCTGCGGAACCTGCTGA
GCCGTTCGAGCGCCAGTATACAGGGCATGGTGGAGAGGGCGGCTCGACTG
AATGGCATTCTCGACCGGCGGCTGGTCGATGATGTGCTGGCCAAGGTGAC
GAGCATGCTGCCCTCCATGCGCGATGTCCGAGTCACGTTGGAGGAGTCGG
CCACACAGATCGGTCGTGTCCAGCTGCAAAATTATCAGTTCGAAGTTTCG
CTAACCGGTGCAGCAGGTTCCGTGCCCACAGGCGCCAATGTCAAGGTGAT
TCCAACTATTACACCAGGTCTTCTTCGTCCGCTCTTCTCACAACAACAGC
TAAATCAGATACGTGGCTTTAAGACGGATCGTTCCATTGAGGCGGAACAA
AAGCGCAATCCCACAATGACCTCCCGACTAAAGAATGCTCTGGCCAACTC
GCCCCAGCGTCTGGATGGGGACACACCCCTTCAGGCTGAAAAACTGAGAC
GGCTGCTGGCCAAATCCGAAGAGCATGGATTTAATAAAGCCGAGAGCCTG
AAAATTGCCTTTGCCGAGGGCTACTTGGCCGCCGCTAACTCGGAGGACTC
TCCAAAATCAGGAAAAACTATGAAATATCTGAAGACTATCGTCGTTATCG
TCGTGTTCTTGGGCATTTTCCTGAGCTTCTTTACAACCTCCAATGGATCC
GTATTTCGCATACAACTGGGCAACCAGGTTGAAGTGGACCCTGAGGAGAT
CAACGTCACTTTTGAGGATGTCAAGGGTTGCGACGAAGCCAAGCAGGAGC
TCAAGGAGGTCGTTGAATTCCTGAAGAGTCCGGAAAAGTTCTCAAATTTG
GGCGGAAAGCTTCCAAAGGGAGTGCTCCTGGTTGGCCCGCCGGGTACTGG
CAAAACACTGCTGGCCCGTGCCGTCGCCGGTGAAGCCAAAGTTCCTTTCT
TCCATGCTGCCGGACCGGAGTTCGACGAGGTGCTCGTAGGCCAAGGAGCC
AGACGAGTGCGTGATCTGTTCAAGGCAGCAAAGGCCCGTGCCCCTTGTGT
TATCTTCATTGACGAAATCGACTCGGTGGGCGCCAAGCGAACCAACTCTG
TGCTGCATCCTTACGCCAATCAGACCATCAATCAGCTGCTCTCCGAGATG
GATGGCTTCCATCAGAACGCTGGCGTCATTGTTTTGGGAGCCACCAATCG
TCGCGACGATTTGGATCAGGCTCTGCTGCGTCCCGGCCGATTTGATGTAG
AAGTCATGGTGTCGACGCCCGATTTCACTGGACGTAAGGAGATATTGTCT
CTGTATCTGACGAAGATTTTGCACGATGAAATAGACTTGGACATGCTGGC
GCGCGGCACCTCTGGTTTTACTGGAGCGGATCTGGAAAACATGATTAACC
AAGCGGCGTTAAGAGCTGCCATCGATGGAGCCGAAACGGTCAGCATGAAG
CATTTGGAAACGGCACGAGACAAAGTACTTATGGGACCCGAGCGCAAGGC
TCGTCTACCGGACGAGGAGGCCAACACCATAACCGCTTACCACGAGGGCG
GCCACGCGATTGTGGCCTTCTACACCAAGGAGTCGCATCCGCTGCACAAG
GTGACCATCATGCCCCGCGGACCCTCCCTTGGACACACCGCCTACATACC
GGAGAAGGAGCGTTACCATGTCACAAAGGCACAGCTGCTGGCCATGATGG
ACACCATGATGGGCGGTCGTGCTGCTGAGGAACTGGTCTTCGGCACGGAC
AAGATTACGTCGGGAGCCAGCAGTGATCTCAAGCAGGCAACCTCGATCGC
GACGCATATGGTCAGGGACTGGGGCATGTCGGACAAGGTCGGTCTTCGCA
CCATCGAGGCGTCAAAGGGTCTGGGCACCGGTGACACCCTTGGTCCCAAC
ACCATTGAAGCCGTGGACGCGGAGATCAAGCGCATCCTCAGCGACAGCTA
CGAGCGGGCGAAGGCTATCCTGCGAAAACACACCAGGGAGCACAAAGCGC
TTGCGGAGGCGCTTCTCAAGTACGAGACTCTTGACGCCGACGACATCAAG
GCAATACTGAATGAAAGCCAGACGTAGAAGCTTTCTAGACCAT
BS07244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-RB | 2211 | CG3499-PB | 1..2211 | 17..2227 | 11055 | 100 | Plus |
CG3499-RD | 2220 | CG3499-PD | 1..2220 | 17..2227 | 10930 | 99.6 | Plus |
CG3499-RC | 2223 | CG3499-PC | 1..2223 | 17..2227 | 10865 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-RB | 2503 | CG3499-RB | 107..2317 | 17..2227 | 11055 | 100 | Plus |
CG3499-RD | 2940 | CG3499-RD | 306..2525 | 17..2227 | 10930 | 99.6 | Plus |
CG3499-RC | 2515 | CG3499-RC | 107..2329 | 17..2227 | 10865 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22883162..22883827 | 2227..1562 | 3330 | 100 | Minus |
2R | 25286936 | 2R | 22885414..22885812 | 441..43 | 1995 | 100 | Minus |
2R | 25286936 | 2R | 22883901..22884291 | 1563..1173 | 1955 | 100 | Minus |
2R | 25286936 | 2R | 22884348..22884662 | 1172..858 | 1575 | 100 | Minus |
2R | 25286936 | 2R | 22885053..22885243 | 692..502 | 955 | 100 | Minus |
2R | 25286936 | 2R | 22884908..22885000 | 784..692 | 465 | 100 | Minus |
2R | 25286936 | 2R | 22884720..22884795 | 858..783 | 380 | 100 | Minus |
2R | 25286936 | 2R | 22885297..22885356 | 501..442 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:22:54 has no hits.
BS07244.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:03 Download gff for
BS07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 1..2211 | 17..2227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:14 Download gff for
BS07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 398..2601 | 24..2227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:29 Download gff for
BS07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 114..2317 | 24..2227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:04 Download gff for
BS07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 391..2601 | 17..2227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:19 Download gff for
BS07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 114..2317 | 24..2227 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:19 Download gff for
BS07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22883162..22883825 | 1564..2227 | 100 | <- | Minus |
2R | 22883901..22884291 | 1173..1563 | 100 | <- | Minus |
2R | 22884348..22884661 | 859..1172 | 100 | <- | Minus |
2R | 22884720..22884793 | 785..858 | 100 | <- | Minus |
2R | 22884908..22885000 | 692..784 | 100 | <- | Minus |
2R | 22885054..22885243 | 502..691 | 100 | <- | Minus |
2R | 22885297..22885356 | 442..501 | 100 | <- | Minus |
2R | 22885414..22885811 | 44..441 | 100 | <- | Minus |
2R | 22885916..22885935 | 24..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:29 Download gff for
BS07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18770685..18771348 | 1564..2227 | 100 | <- | Minus |
arm_2R | 18771424..18771814 | 1173..1563 | 100 | <- | Minus |
arm_2R | 18771871..18772184 | 859..1172 | 100 | <- | Minus |
arm_2R | 18772243..18772316 | 785..858 | 100 | <- | Minus |
arm_2R | 18772431..18772523 | 692..784 | 100 | <- | Minus |
arm_2R | 18772577..18772766 | 502..691 | 100 | <- | Minus |
arm_2R | 18772820..18772879 | 442..501 | 100 | <- | Minus |
arm_2R | 18772937..18773334 | 44..441 | 100 | <- | Minus |
arm_2R | 18773439..18773458 | 24..43 | 100 | | Minus |
BS07244.pep Sequence
Translation from 16 to 2226
> BS07244.pep
MFSTTTHSVPYLYLGNFSRKPHYYSVNRTKLHGSAGAARLSKSTSTSSRS
HDLVLDLRNLLSRSSASIQGMVERAARLNGILDRRLVDDVLAKVTSMLPS
MRDVRVTLEESATQIGRVQLQNYQFEVSLTGAAGSVPTGANVKVIPTITP
GLLRPLFSQQQLNQIRGFKTDRSIEAEQKRNPTMTSRLKNALANSPQRLD
GDTPLQAEKLRRLLAKSEEHGFNKAESLKIAFAEGYLAAANSEDSPKSGK
TMKYLKTIVVIVVFLGIFLSFFTTSNGSVFRIQLGNQVEVDPEEINVTFE
DVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLA
RAVAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDE
IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLD
QALLRPGRFDVEVMVSTPDFTGRKEILSLYLTKILHDEIDLDMLARGTSG
FTGADLENMINQAALRAAIDGAETVSMKHLETARDKVLMGPERKARLPDE
EANTITAYHEGGHAIVAFYTKESHPLHKVTIMPRGPSLGHTAYIPEKERY
HVTKAQLLAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIATHMVR
DWGMSDKVGLRTIEASKGLGTGDTLGPNTIEAVDAEIKRILSDSYERAKA
ILRKHTREHKALAEALLKYETLDADDIKAILNESQT*
BS07244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-PB | 736 | CG3499-PB | 1..736 | 1..736 | 3701 | 100 | Plus |
CG3499-PD | 739 | CG3499-PD | 1..739 | 1..736 | 3687 | 99.6 | Plus |
CG3499-PC | 740 | CG3499-PC | 1..740 | 1..736 | 3675 | 99.5 | Plus |
CG6512-PB | 697 | CG6512-PB | 190..634 | 291..731 | 948 | 44.7 | Plus |
CG6512-PA | 826 | CG6512-PA | 319..763 | 291..731 | 948 | 44.7 | Plus |