Clone BS07244 Report

Search the DGRC for BS07244

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG3499-RB
Protein status:BS07244.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07244.3prime Sequence

870 bp (830 high quality bases) assembled on 2006-01-06

> BS07244.3prime
ATGGTCTAGAAAGCTTCTACGTCTGGCTTTCATTCAGTATTGCCTTGATG
TCGTCGGCGTCAAGAGTCTCGTACTTGAGAAGCGCCTCCGCAAGCGCTTT
GTGCTCCCTGGTGTGTTTTCGCAGGATAGCCTTCGCCCGCTCGTAGCTGT
CGCTGAGGATGCGCTTGATCTCCGCGTCCACGGCTTCAATGGTGTTGGGA
CCAAGGGTGTCACCGGTGCCCAGACCCTTTGACGCCTCGATGGTGCGAAG
ACCGACCTTGTCCGACATGCCCCAGTCCCTGACCATATGCGTCGCGATCG
AGGTTGCCTGCTTGAGATCACTGCTGGCTCCCGACGTAATCTTGTCCGTG
CCGAAGACCAGTTCCTCAGCAGCACGACCGCCCATCATGGTGTCCATCAT
GGCCAGCAGCTGTGCCTTTGTGACATGGTAACGCTCCTTCTCCGGTATGT
AGGCGGTGTGTCCAAGGGAGGGTCCGCGGGGCATGATGGTCACCTTGTGC
AGCGGATGCGACTCCTTGGTGTAGAAGGCCACAATCGCGTGGCCGCCCTC
GTGGTAAGCGGTTATGGTGTTGGCCTCCTCGTCCGGTAGACGAGCCTTGC
GCTCGGGTCCCATAAGTACTTTGTCTCGTGCCGTTTCCAAATGCTTCATG
CTGACCGTTTCGGCTCCATCGATGGCAGCTCTTAACGCCGCTTGGTTAAT
CATGTTTTCCAGATCCGCTCCAGTAAAACCAGAGGTGCCGCGCGCCAGCA
TGTCCAAGTCTATTTCATCGTGCAAAATCTTCGTCAGATACAGAGACAAT
ATCTCCTTACGTCCAGTGAAATCGGGCGTCGACACAATGACTTCTACATC
AAATCGGCCGGGGACGCAGC

BS07244.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-PB 2211 CG3499-RB 1366..2211 862..17 4205 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-RC 2515 CG3499-RC 1477..2329 870..17 4230 99.8 Minus
CG3499-RD 2940 CG3499-RD 1673..2525 870..17 4230 99.8 Minus
CG3499-RB 2503 CG3499-RB 1465..2317 870..17 4230 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22883162..22883827 17..682 3330 100 Plus
2R 25286936 2R 22883901..22884082 681..862 895 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 19:17:12 has no hits.

BS07244.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:54 Download gff for BS07244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-PB 1359..2211 17..870 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:51 Download gff for BS07244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-PB 1359..2211 17..870 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:47 Download gff for BS07244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 1465..2317 17..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:57:42 Download gff for BS07244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 1465..2317 17..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:57:42 Download gff for BS07244.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22883162..22883825 17..680 100 <- Plus
2R 22883901..22884089 681..870 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:47 Download gff for BS07244.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18770685..18771348 17..680 100 <- Plus
arm_2R 18771424..18771612 681..870 98   Plus

BS07244.5prime Sequence

869 bp (742 high quality bases) assembled on 2006-01-06

> BS07244.5prime
GAAGTTATCAGTCGACATGTTTTCCACCACCACACACTCCGTGCCCTACC
TGTACCTAGGCAACTTCAGCAGAAAGCCGCACTACTACTCCGTTAATCGA
ACCAAGCTGCACGGGAGCGCGGGAGCTGCCCGGTTGTCCAAGTCCACGTC
CACGTCCAGCCGGAGTCATGACCTAGTGCTCGACCTGCGGAACCTGCTGA
GCCGTTCGAGCGCCAGTATACAGGGCATGGTGGAGAGGGCGGCTCGACTG
AATGGCATTCTCGACCGGCGGCTGGTCGATGATGTGCTGGCCAAGGTGAC
GAGCATGCTGCCCTCCATGCGCGATGTCCGAGTCACGTTGGAGGAGTCGG
CCACACAGATCGGTCGTGTCCAGCTGCAAAATTATCAGTTCGAAGTTTCG
CTAACCGGTGCAGCAGGTTCCGTGCCCACAGGCGCCAATGTCAAGGTGAT
TCCAACTATTACACCAGGTCTTCTTCGTCCGCTCTTCTCACAACAACAGC
TAAATCAGATACGTGGCTTTAAGACGGATCGTTCCATTGAGGCGGAACAA
AAGCGCAATCCCACAATGACCTCCCGACTAAAGAATGCTCTGGCCAACTC
GCCCCAGCGTCTGGATGGGGACACACCCCTTCAGGCTGAAAAACTGAGAC
GGCTGCTGGCCAAATCCGAAGAGCATGGATTTAATAAAGCCGAGAGCCTG
AAAATTGCCTTTGCCGAGGGCTACTTGGCCGCCGCTAACTCGGAGGACTC
TCCAAAATCAGGAAAAACTATGAAATATCTGAAGACTATCGTCGTTATCG
TCGTGTTCTTGGGCATTTTCCTGAGCTTCTTTACAACCTCCAATGGATCC
GTATTTCGCATACAACTGG

BS07244.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-PB 2211 CG3499-RB 1..853 17..869 4265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-RB 2503 CG3499-RB 107..959 17..869 4265 100 Plus
CG3499-RD 2940 CG3499-RD 306..1167 17..869 4165 99 Plus
CG3499-RC 2515 CG3499-RC 107..971 17..869 4125 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22885414..22885812 441..43 1995 100 Minus
2R 25286936 2R 22885053..22885243 692..502 955 100 Minus
2R 25286936 2R 22884908..22885000 784..692 465 100 Minus
2R 25286936 2R 22884720..22884795 858..783 380 100 Minus
2R 25286936 2R 22885297..22885356 501..442 300 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:28:06 has no hits.

BS07244.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:55 Download gff for BS07244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-PB 1..853 17..869 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:52 Download gff for BS07244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-PB 1..853 17..869 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:17 Download gff for BS07244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 107..959 17..869 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:13:31 Download gff for BS07244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 107..959 17..869 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:13:31 Download gff for BS07244.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22884720..22884793 785..858 100 <- Minus
2R 22884908..22885000 692..784 100 <- Minus
2R 22885054..22885243 502..691 100 <- Minus
2R 22885297..22885356 442..501 100 <- Minus
2R 22885414..22885811 44..441 100 <- Minus
2R 22885916..22885942 17..43 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:17 Download gff for BS07244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18772243..18772316 785..858 100 <- Minus
arm_2R 18772431..18772523 692..784 100 <- Minus
arm_2R 18772577..18772766 502..691 100 <- Minus
arm_2R 18772820..18772879 442..501 100 <- Minus
arm_2R 18772937..18773334 44..441 100 <- Minus
arm_2R 18773439..18773465 17..43 100   Minus

BS07244.complete Sequence

2243 bp assembled on 2008-01-02

GenBank Submission: FJ635783

> BS07244.complete
GAAGTTATCAGTCGACATGTTTTCCACCACCACACACTCCGTGCCCTACC
TGTACCTAGGCAACTTCAGCAGAAAGCCGCACTACTACTCCGTTAATCGA
ACCAAGCTGCACGGGAGCGCGGGAGCTGCCCGGTTGTCCAAGTCCACGTC
CACGTCCAGCCGGAGTCATGACCTAGTGCTCGACCTGCGGAACCTGCTGA
GCCGTTCGAGCGCCAGTATACAGGGCATGGTGGAGAGGGCGGCTCGACTG
AATGGCATTCTCGACCGGCGGCTGGTCGATGATGTGCTGGCCAAGGTGAC
GAGCATGCTGCCCTCCATGCGCGATGTCCGAGTCACGTTGGAGGAGTCGG
CCACACAGATCGGTCGTGTCCAGCTGCAAAATTATCAGTTCGAAGTTTCG
CTAACCGGTGCAGCAGGTTCCGTGCCCACAGGCGCCAATGTCAAGGTGAT
TCCAACTATTACACCAGGTCTTCTTCGTCCGCTCTTCTCACAACAACAGC
TAAATCAGATACGTGGCTTTAAGACGGATCGTTCCATTGAGGCGGAACAA
AAGCGCAATCCCACAATGACCTCCCGACTAAAGAATGCTCTGGCCAACTC
GCCCCAGCGTCTGGATGGGGACACACCCCTTCAGGCTGAAAAACTGAGAC
GGCTGCTGGCCAAATCCGAAGAGCATGGATTTAATAAAGCCGAGAGCCTG
AAAATTGCCTTTGCCGAGGGCTACTTGGCCGCCGCTAACTCGGAGGACTC
TCCAAAATCAGGAAAAACTATGAAATATCTGAAGACTATCGTCGTTATCG
TCGTGTTCTTGGGCATTTTCCTGAGCTTCTTTACAACCTCCAATGGATCC
GTATTTCGCATACAACTGGGCAACCAGGTTGAAGTGGACCCTGAGGAGAT
CAACGTCACTTTTGAGGATGTCAAGGGTTGCGACGAAGCCAAGCAGGAGC
TCAAGGAGGTCGTTGAATTCCTGAAGAGTCCGGAAAAGTTCTCAAATTTG
GGCGGAAAGCTTCCAAAGGGAGTGCTCCTGGTTGGCCCGCCGGGTACTGG
CAAAACACTGCTGGCCCGTGCCGTCGCCGGTGAAGCCAAAGTTCCTTTCT
TCCATGCTGCCGGACCGGAGTTCGACGAGGTGCTCGTAGGCCAAGGAGCC
AGACGAGTGCGTGATCTGTTCAAGGCAGCAAAGGCCCGTGCCCCTTGTGT
TATCTTCATTGACGAAATCGACTCGGTGGGCGCCAAGCGAACCAACTCTG
TGCTGCATCCTTACGCCAATCAGACCATCAATCAGCTGCTCTCCGAGATG
GATGGCTTCCATCAGAACGCTGGCGTCATTGTTTTGGGAGCCACCAATCG
TCGCGACGATTTGGATCAGGCTCTGCTGCGTCCCGGCCGATTTGATGTAG
AAGTCATGGTGTCGACGCCCGATTTCACTGGACGTAAGGAGATATTGTCT
CTGTATCTGACGAAGATTTTGCACGATGAAATAGACTTGGACATGCTGGC
GCGCGGCACCTCTGGTTTTACTGGAGCGGATCTGGAAAACATGATTAACC
AAGCGGCGTTAAGAGCTGCCATCGATGGAGCCGAAACGGTCAGCATGAAG
CATTTGGAAACGGCACGAGACAAAGTACTTATGGGACCCGAGCGCAAGGC
TCGTCTACCGGACGAGGAGGCCAACACCATAACCGCTTACCACGAGGGCG
GCCACGCGATTGTGGCCTTCTACACCAAGGAGTCGCATCCGCTGCACAAG
GTGACCATCATGCCCCGCGGACCCTCCCTTGGACACACCGCCTACATACC
GGAGAAGGAGCGTTACCATGTCACAAAGGCACAGCTGCTGGCCATGATGG
ACACCATGATGGGCGGTCGTGCTGCTGAGGAACTGGTCTTCGGCACGGAC
AAGATTACGTCGGGAGCCAGCAGTGATCTCAAGCAGGCAACCTCGATCGC
GACGCATATGGTCAGGGACTGGGGCATGTCGGACAAGGTCGGTCTTCGCA
CCATCGAGGCGTCAAAGGGTCTGGGCACCGGTGACACCCTTGGTCCCAAC
ACCATTGAAGCCGTGGACGCGGAGATCAAGCGCATCCTCAGCGACAGCTA
CGAGCGGGCGAAGGCTATCCTGCGAAAACACACCAGGGAGCACAAAGCGC
TTGCGGAGGCGCTTCTCAAGTACGAGACTCTTGACGCCGACGACATCAAG
GCAATACTGAATGAAAGCCAGACGTAGAAGCTTTCTAGACCAT

BS07244.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-RB 2211 CG3499-PB 1..2211 17..2227 11055 100 Plus
CG3499-RD 2220 CG3499-PD 1..2220 17..2227 10930 99.6 Plus
CG3499-RC 2223 CG3499-PC 1..2223 17..2227 10865 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-RB 2503 CG3499-RB 107..2317 17..2227 11055 100 Plus
CG3499-RD 2940 CG3499-RD 306..2525 17..2227 10930 99.6 Plus
CG3499-RC 2515 CG3499-RC 107..2329 17..2227 10865 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22883162..22883827 2227..1562 3330 100 Minus
2R 25286936 2R 22885414..22885812 441..43 1995 100 Minus
2R 25286936 2R 22883901..22884291 1563..1173 1955 100 Minus
2R 25286936 2R 22884348..22884662 1172..858 1575 100 Minus
2R 25286936 2R 22885053..22885243 692..502 955 100 Minus
2R 25286936 2R 22884908..22885000 784..692 465 100 Minus
2R 25286936 2R 22884720..22884795 858..783 380 100 Minus
2R 25286936 2R 22885297..22885356 501..442 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:22:54 has no hits.

BS07244.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:03 Download gff for BS07244.complete
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 1..2211 17..2227 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:14 Download gff for BS07244.complete
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 398..2601 24..2227 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:29 Download gff for BS07244.complete
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 114..2317 24..2227 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:04 Download gff for BS07244.complete
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 391..2601 17..2227 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:19 Download gff for BS07244.complete
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 114..2317 24..2227 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:19 Download gff for BS07244.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22883162..22883825 1564..2227 100 <- Minus
2R 22883901..22884291 1173..1563 100 <- Minus
2R 22884348..22884661 859..1172 100 <- Minus
2R 22884720..22884793 785..858 100 <- Minus
2R 22884908..22885000 692..784 100 <- Minus
2R 22885054..22885243 502..691 100 <- Minus
2R 22885297..22885356 442..501 100 <- Minus
2R 22885414..22885811 44..441 100 <- Minus
2R 22885916..22885935 24..43 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:29 Download gff for BS07244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18770685..18771348 1564..2227 100 <- Minus
arm_2R 18771424..18771814 1173..1563 100 <- Minus
arm_2R 18771871..18772184 859..1172 100 <- Minus
arm_2R 18772243..18772316 785..858 100 <- Minus
arm_2R 18772431..18772523 692..784 100 <- Minus
arm_2R 18772577..18772766 502..691 100 <- Minus
arm_2R 18772820..18772879 442..501 100 <- Minus
arm_2R 18772937..18773334 44..441 100 <- Minus
arm_2R 18773439..18773458 24..43 100   Minus

BS07244.pep Sequence

Translation from 16 to 2226

> BS07244.pep
MFSTTTHSVPYLYLGNFSRKPHYYSVNRTKLHGSAGAARLSKSTSTSSRS
HDLVLDLRNLLSRSSASIQGMVERAARLNGILDRRLVDDVLAKVTSMLPS
MRDVRVTLEESATQIGRVQLQNYQFEVSLTGAAGSVPTGANVKVIPTITP
GLLRPLFSQQQLNQIRGFKTDRSIEAEQKRNPTMTSRLKNALANSPQRLD
GDTPLQAEKLRRLLAKSEEHGFNKAESLKIAFAEGYLAAANSEDSPKSGK
TMKYLKTIVVIVVFLGIFLSFFTTSNGSVFRIQLGNQVEVDPEEINVTFE
DVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLA
RAVAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDE
IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLD
QALLRPGRFDVEVMVSTPDFTGRKEILSLYLTKILHDEIDLDMLARGTSG
FTGADLENMINQAALRAAIDGAETVSMKHLETARDKVLMGPERKARLPDE
EANTITAYHEGGHAIVAFYTKESHPLHKVTIMPRGPSLGHTAYIPEKERY
HVTKAQLLAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIATHMVR
DWGMSDKVGLRTIEASKGLGTGDTLGPNTIEAVDAEIKRILSDSYERAKA
ILRKHTREHKALAEALLKYETLDADDIKAILNESQT*

BS07244.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-PB 736 CG3499-PB 1..736 1..736 3701 100 Plus
CG3499-PD 739 CG3499-PD 1..739 1..736 3687 99.6 Plus
CG3499-PC 740 CG3499-PC 1..740 1..736 3675 99.5 Plus
CG6512-PB 697 CG6512-PB 190..634 291..731 948 44.7 Plus
CG6512-PA 826 CG6512-PA 319..763 291..731 948 44.7 Plus