Clone Sequence Records
BS07246.3prime Sequence
768 bp (767 high quality bases) assembled on 2006-01-06
> BS07246.3prime
ATGGTCTAGAAAGCTTTTATTTAGTTTTGTTCTGGCGGCGTTCATTCTGT
TTTCGCTCCTCCTTTTGCGTCAGTATAATCAGCAAACGGCGGAACATGCT
GAGTACATCGAAGAACAAATCTAAAGCGTGCTGCACCACATCTCGATTTC
CGTTTCGGCACTTCTCCACAATGTTCTGTGTATCGTAGACGATGAAGGCA
GCCATAACGAAAACGCCGACGTAAAGTTGAGTCACTTGCACGAAGTAGGA
CTTGAAGACCATGTTAAAGAGACTCAGCAGCGCCATGGTGTTGATGACGC
TAACCAGCATCCCACCCAGATAGAGGTACTTGCCCTGCTCGGCCAGAAGG
GCGGACAAGGAGAGCGAGATGAAGGTGACGAAGGTGCCCGTAAGGGCAGA
CAGGATTATTGCCGGATTTATGCTGCATATATAGCCGAGGAGCGGTCCGA
GCGTCTGGCCGGAGCAGAATCCGAAGGCGTAGAGCATGCCCAAACGTGTA
TAATAGTTCTTGCCGTCATCCTTGTAGAAGTGCAGACCCAAGACCAGGAC
TAGAGTGGCCACCGCCGCCAGGACTCCAAGATCGAGAAAGTCACGCATCT
GAAGCATGGCTCCCATGGCCGTGGCAGCGGCAGTGCTGCCCAGGACCATG
TAAACCTTAGACAGGTGCTCGCGCACATAGGGCTCATAACGGTCACCGAG
CCCGTTCATGAAGGTCTGGAAACGGTCGTTGATGTAATTCGCAGTATCTG
CCATGTCGACTGATAACT
BS07246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7188-PA | 738 | CG7188-RA | 1..738 | 754..17 | 3690 | 100 | Minus |
CG7188-PB | 714 | CG7188-RB | 1..693 | 754..62 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BI-1-RA | 1107 | CG7188-RA | 179..917 | 754..16 | 3695 | 100 | Minus |
BI-1-RB | 1247 | CG7188-RB | 179..871 | 754..62 | 3465 | 100 | Minus |
BI-1-RB | 1247 | CG7188-RB | 1007..1057 | 66..16 | 240 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8308092..8308545 | 233..686 | 2270 | 100 | Plus |
3L | 28110227 | 3L | 8307793..8307965 | 61..233 | 865 | 100 | Plus |
3L | 28110227 | 3L | 8308696..8308763 | 687..754 | 340 | 100 | Plus |
3L | 28110227 | 3L | 8307335..8307382 | 16..63 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:56:26 has no hits.
BS07246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:58 Download gff for
BS07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:58 Download gff for
BS07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:39:38 Download gff for
BS07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 171..923 | 7..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:30 Download gff for
BS07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 171..923 | 7..761 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:30 Download gff for
BS07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8307329..8307380 | 7..61 | 94 | <- | Plus |
3L | 8307794..8307964 | 62..232 | 100 | <- | Plus |
3L | 8308092..8308545 | 233..686 | 100 | <- | Plus |
3L | 8308696..8308771 | 687..761 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:39:38 Download gff for
BS07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8300429..8300480 | 7..61 | 94 | <- | Plus |
arm_3L | 8300894..8301064 | 62..232 | 100 | <- | Plus |
arm_3L | 8301192..8301645 | 233..686 | 100 | <- | Plus |
arm_3L | 8301796..8301871 | 687..761 | 96 | | Plus |
BS07246.5prime Sequence
768 bp (767 high quality bases) assembled on 2006-01-06
> BS07246.5prime
GAAGTTATCAGTCGACATGGCAGATACTGCGAATTACATCAACGACCGTT
TCCAGACCTTCATGAACGGGCTCGGTGACCGTTATGAGCCCTATGTGCGC
GAGCACCTGTCTAAGGTTTACATGGTCCTGGGCAGCACTGCCGCTGCCAC
GGCCATGGGAGCCATGCTTCAGATGCGTGACTTTCTCGATCTTGGAGTCC
TGGCGGCGGTGGCCACTCTAGTCCTGGTCTTGGGTCTGCACTTCTACAAG
GATGACGGCAAGAACTATTATACACGTTTGGGCATGCTCTACGCCTTCGG
ATTCTGCTCCGGCCAGACGCTCGGACCGCTCCTCGGCTATATATGCAGCA
TAAATCCGGCAATAATCCTGTCTGCCCTTACGGGCACCTTCGTCACCTTC
ATCTCGCTCTCCTTGTCCGCCCTTCTGGCCGAGCAGGGCAAGTACCTCTA
TCTGGGTGGGATGCTGGTTAGCGTCATCAACACCATGGCGCTGCTGAGTC
TCTTTAACATGGTCTTCAAGTCCTACTTCGTGCAAGTGACTCAACTTTAC
GTCGGCGTTTTCGTTATGGCTGCCTTCATCGTCTACGATACACAGAACAT
TGTGGAGAAGTGCCGAAACGGAAATCGAGATGTGGTGCAGCACGCTTTAG
ATTTGTTCTTCGATGTACTCAGCATGTTCCGCCGTTTGCTGATTATACTG
ACGCAAAAGGAGGAGCGAAAACAGAATGAACGCCGCCAGAACAAAACTAA
ATAAAAGCTTTCTAGACC
BS07246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7188-PA | 738 | CG7188-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
CG7188-PB | 714 | CG7188-RB | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BI-1-RA | 1107 | CG7188-RA | 179..917 | 17..755 | 3695 | 100 | Plus |
BI-1-RB | 1247 | CG7188-RB | 179..871 | 17..709 | 3465 | 100 | Plus |
BI-1-RB | 1247 | CG7188-RB | 1007..1057 | 705..755 | 240 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8308092..8308545 | 538..85 | 2270 | 100 | Minus |
3L | 28110227 | 3L | 8307793..8307965 | 710..538 | 865 | 100 | Minus |
3L | 28110227 | 3L | 8308696..8308763 | 84..17 | 340 | 100 | Minus |
3L | 28110227 | 3L | 8307335..8307382 | 755..708 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:19:14 has no hits.
BS07246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:59 Download gff for
BS07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:59 Download gff for
BS07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:58:09 Download gff for
BS07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 171..923 | 10..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:10 Download gff for
BS07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 171..923 | 10..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:10 Download gff for
BS07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8307329..8307380 | 710..764 | 94 | <- | Minus |
3L | 8307794..8307964 | 539..709 | 100 | <- | Minus |
3L | 8308092..8308545 | 85..538 | 100 | <- | Minus |
3L | 8308696..8308771 | 10..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:58:09 Download gff for
BS07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8300429..8300480 | 710..764 | 94 | <- | Minus |
arm_3L | 8300894..8301064 | 539..709 | 100 | <- | Minus |
arm_3L | 8301192..8301645 | 85..538 | 100 | <- | Minus |
arm_3L | 8301796..8301871 | 10..84 | 96 | | Minus |
BS07246.complete Sequence
770 bp (770 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635784
> BS07246.complete
GAAGTTATCAGTCGACATGGCAGATACTGCGAATTACATCAACGACCGTT
TCCAGACCTTCATGAACGGGCTCGGTGACCGTTATGAGCCCTATGTGCGC
GAGCACCTGTCTAAGGTTTACATGGTCCTGGGCAGCACTGCCGCTGCCAC
GGCCATGGGAGCCATGCTTCAGATGCGTGACTTTCTCGATCTTGGAGTCC
TGGCGGCGGTGGCCACTCTAGTCCTGGTCTTGGGTCTGCACTTCTACAAG
GATGACGGCAAGAACTATTATACACGTTTGGGCATGCTCTACGCCTTCGG
ATTCTGCTCCGGCCAGACGCTCGGACCGCTCCTCGGCTATATATGCAGCA
TAAATCCGGCAATAATCCTGTCTGCCCTTACGGGCACCTTCGTCACCTTC
ATCTCGCTCTCCTTGTCCGCCCTTCTGGCCGAGCAGGGCAAGTACCTCTA
TCTGGGTGGGATGCTGGTTAGCGTCATCAACACCATGGCGCTGCTGAGTC
TCTTTAACATGGTCTTCAAGTCCTACTTCGTGCAAGTGACTCAACTTTAC
GTCGGCGTTTTCGTTATGGCTGCCTTCATCGTCTACGATACACAGAACAT
TGTGGAGAAGTGCCGAAACGGAAATCGAGATGTGGTGCAGCACGCTTTAG
ATTTGTTCTTCGATGTACTCAGCATGTTCCGCCGTTTGCTGATTATACTG
ACGCAAAAGGAGGAGCGAAAACAGAATGAACGCCGCCAGAACAAAACTAA
ATAAAAGCTTTCTAGACCAT
BS07246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BI-1-RA | 738 | CG7188-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
BI-1-RB | 714 | CG7188-PB | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BI-1-RA | 1107 | CG7188-RA | 179..917 | 17..755 | 3695 | 100 | Plus |
BI-1-RB | 1247 | CG7188-RB | 179..871 | 17..709 | 3465 | 100 | Plus |
BI-1-RB | 1247 | CG7188-RB | 1007..1057 | 705..755 | 240 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8308092..8308545 | 538..85 | 2270 | 100 | Minus |
3L | 28110227 | 3L | 8307793..8307965 | 710..538 | 865 | 100 | Minus |
3L | 28110227 | 3L | 8308696..8308763 | 84..17 | 340 | 100 | Minus |
3L | 28110227 | 3L | 8307335..8307382 | 755..708 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:01:54 has no hits.
BS07246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:04 Download gff for
BS07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:28 Download gff for
BS07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-RA | 192..944 | 10..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:59 Download gff for
BS07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 179..914 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:04 Download gff for
BS07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-RA | 192..944 | 10..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:45 Download gff for
BS07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 179..914 | 17..752 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:45 Download gff for
BS07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8307338..8307380 | 710..752 | 100 | <- | Minus |
3L | 8307794..8307964 | 539..709 | 100 | <- | Minus |
3L | 8308092..8308545 | 85..538 | 100 | <- | Minus |
3L | 8308696..8308763 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:59 Download gff for
BS07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8300438..8300480 | 710..752 | 100 | <- | Minus |
arm_3L | 8300894..8301064 | 539..709 | 100 | <- | Minus |
arm_3L | 8301192..8301645 | 85..538 | 100 | <- | Minus |
arm_3L | 8301796..8301863 | 17..84 | 100 | | Minus |
BS07246.pep Sequence
Translation from 16 to 753
> BS07246.pep
MADTANYINDRFQTFMNGLGDRYEPYVREHLSKVYMVLGSTAAATAMGAM
LQMRDFLDLGVLAAVATLVLVLGLHFYKDDGKNYYTRLGMLYAFGFCSGQ
TLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLGGML
VSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCR
NGNRDVVQHALDLFFDVLSMFRRLLIILTQKEERKQNERRQNKTK*
BS07246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BI-1-PA | 245 | CG7188-PA | 1..245 | 1..245 | 1239 | 100 | Plus |
BI-1-PB | 237 | CG7188-PB | 1..231 | 1..231 | 1167 | 100 | Plus |
CG1287-PA | 365 | CG1287-PA | 139..364 | 26..235 | 166 | 27.3 | Plus |