Clone BS07246 Report

Search the DGRC for BS07246

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptBI-1-RA
Protein status:BS07246.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07246.3prime Sequence

768 bp (767 high quality bases) assembled on 2006-01-06

> BS07246.3prime
ATGGTCTAGAAAGCTTTTATTTAGTTTTGTTCTGGCGGCGTTCATTCTGT
TTTCGCTCCTCCTTTTGCGTCAGTATAATCAGCAAACGGCGGAACATGCT
GAGTACATCGAAGAACAAATCTAAAGCGTGCTGCACCACATCTCGATTTC
CGTTTCGGCACTTCTCCACAATGTTCTGTGTATCGTAGACGATGAAGGCA
GCCATAACGAAAACGCCGACGTAAAGTTGAGTCACTTGCACGAAGTAGGA
CTTGAAGACCATGTTAAAGAGACTCAGCAGCGCCATGGTGTTGATGACGC
TAACCAGCATCCCACCCAGATAGAGGTACTTGCCCTGCTCGGCCAGAAGG
GCGGACAAGGAGAGCGAGATGAAGGTGACGAAGGTGCCCGTAAGGGCAGA
CAGGATTATTGCCGGATTTATGCTGCATATATAGCCGAGGAGCGGTCCGA
GCGTCTGGCCGGAGCAGAATCCGAAGGCGTAGAGCATGCCCAAACGTGTA
TAATAGTTCTTGCCGTCATCCTTGTAGAAGTGCAGACCCAAGACCAGGAC
TAGAGTGGCCACCGCCGCCAGGACTCCAAGATCGAGAAAGTCACGCATCT
GAAGCATGGCTCCCATGGCCGTGGCAGCGGCAGTGCTGCCCAGGACCATG
TAAACCTTAGACAGGTGCTCGCGCACATAGGGCTCATAACGGTCACCGAG
CCCGTTCATGAAGGTCTGGAAACGGTCGTTGATGTAATTCGCAGTATCTG
CCATGTCGACTGATAACT

BS07246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7188-PA 738 CG7188-RA 1..738 754..17 3690 100 Minus
CG7188-PB 714 CG7188-RB 1..693 754..62 3465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
BI-1-RA 1107 CG7188-RA 179..917 754..16 3695 100 Minus
BI-1-RB 1247 CG7188-RB 179..871 754..62 3465 100 Minus
BI-1-RB 1247 CG7188-RB 1007..1057 66..16 240 98 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8308092..8308545 233..686 2270 100 Plus
3L 28110227 3L 8307793..8307965 61..233 865 100 Plus
3L 28110227 3L 8308696..8308763 687..754 340 100 Plus
3L 28110227 3L 8307335..8307382 16..63 240 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:56:26 has no hits.

BS07246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:58 Download gff for BS07246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7188-PA 1..738 17..754 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:58 Download gff for BS07246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7188-PA 1..738 17..754 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:39:38 Download gff for BS07246.3prime
Subject Subject Range Query Range Percent Splice Strand
BI-1-RA 171..923 7..761 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:30 Download gff for BS07246.3prime
Subject Subject Range Query Range Percent Splice Strand
BI-1-RA 171..923 7..761 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:30 Download gff for BS07246.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8307329..8307380 7..61 94 <- Plus
3L 8307794..8307964 62..232 100 <- Plus
3L 8308092..8308545 233..686 100 <- Plus
3L 8308696..8308771 687..761 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:39:38 Download gff for BS07246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8300429..8300480 7..61 94 <- Plus
arm_3L 8300894..8301064 62..232 100 <- Plus
arm_3L 8301192..8301645 233..686 100 <- Plus
arm_3L 8301796..8301871 687..761 96   Plus

BS07246.5prime Sequence

768 bp (767 high quality bases) assembled on 2006-01-06

> BS07246.5prime
GAAGTTATCAGTCGACATGGCAGATACTGCGAATTACATCAACGACCGTT
TCCAGACCTTCATGAACGGGCTCGGTGACCGTTATGAGCCCTATGTGCGC
GAGCACCTGTCTAAGGTTTACATGGTCCTGGGCAGCACTGCCGCTGCCAC
GGCCATGGGAGCCATGCTTCAGATGCGTGACTTTCTCGATCTTGGAGTCC
TGGCGGCGGTGGCCACTCTAGTCCTGGTCTTGGGTCTGCACTTCTACAAG
GATGACGGCAAGAACTATTATACACGTTTGGGCATGCTCTACGCCTTCGG
ATTCTGCTCCGGCCAGACGCTCGGACCGCTCCTCGGCTATATATGCAGCA
TAAATCCGGCAATAATCCTGTCTGCCCTTACGGGCACCTTCGTCACCTTC
ATCTCGCTCTCCTTGTCCGCCCTTCTGGCCGAGCAGGGCAAGTACCTCTA
TCTGGGTGGGATGCTGGTTAGCGTCATCAACACCATGGCGCTGCTGAGTC
TCTTTAACATGGTCTTCAAGTCCTACTTCGTGCAAGTGACTCAACTTTAC
GTCGGCGTTTTCGTTATGGCTGCCTTCATCGTCTACGATACACAGAACAT
TGTGGAGAAGTGCCGAAACGGAAATCGAGATGTGGTGCAGCACGCTTTAG
ATTTGTTCTTCGATGTACTCAGCATGTTCCGCCGTTTGCTGATTATACTG
ACGCAAAAGGAGGAGCGAAAACAGAATGAACGCCGCCAGAACAAAACTAA
ATAAAAGCTTTCTAGACC

BS07246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7188-PA 738 CG7188-RA 1..738 17..754 3690 100 Plus
CG7188-PB 714 CG7188-RB 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
BI-1-RA 1107 CG7188-RA 179..917 17..755 3695 100 Plus
BI-1-RB 1247 CG7188-RB 179..871 17..709 3465 100 Plus
BI-1-RB 1247 CG7188-RB 1007..1057 705..755 240 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8308092..8308545 538..85 2270 100 Minus
3L 28110227 3L 8307793..8307965 710..538 865 100 Minus
3L 28110227 3L 8308696..8308763 84..17 340 100 Minus
3L 28110227 3L 8307335..8307382 755..708 240 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:19:14 has no hits.

BS07246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:06:59 Download gff for BS07246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7188-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:54:59 Download gff for BS07246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7188-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:58:09 Download gff for BS07246.5prime
Subject Subject Range Query Range Percent Splice Strand
BI-1-RA 171..923 10..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:10 Download gff for BS07246.5prime
Subject Subject Range Query Range Percent Splice Strand
BI-1-RA 171..923 10..764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:10 Download gff for BS07246.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8307329..8307380 710..764 94 <- Minus
3L 8307794..8307964 539..709 100 <- Minus
3L 8308092..8308545 85..538 100 <- Minus
3L 8308696..8308771 10..84 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:58:09 Download gff for BS07246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8300429..8300480 710..764 94 <- Minus
arm_3L 8300894..8301064 539..709 100 <- Minus
arm_3L 8301192..8301645 85..538 100 <- Minus
arm_3L 8301796..8301871 10..84 96   Minus

BS07246.complete Sequence

770 bp (770 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635784

> BS07246.complete
GAAGTTATCAGTCGACATGGCAGATACTGCGAATTACATCAACGACCGTT
TCCAGACCTTCATGAACGGGCTCGGTGACCGTTATGAGCCCTATGTGCGC
GAGCACCTGTCTAAGGTTTACATGGTCCTGGGCAGCACTGCCGCTGCCAC
GGCCATGGGAGCCATGCTTCAGATGCGTGACTTTCTCGATCTTGGAGTCC
TGGCGGCGGTGGCCACTCTAGTCCTGGTCTTGGGTCTGCACTTCTACAAG
GATGACGGCAAGAACTATTATACACGTTTGGGCATGCTCTACGCCTTCGG
ATTCTGCTCCGGCCAGACGCTCGGACCGCTCCTCGGCTATATATGCAGCA
TAAATCCGGCAATAATCCTGTCTGCCCTTACGGGCACCTTCGTCACCTTC
ATCTCGCTCTCCTTGTCCGCCCTTCTGGCCGAGCAGGGCAAGTACCTCTA
TCTGGGTGGGATGCTGGTTAGCGTCATCAACACCATGGCGCTGCTGAGTC
TCTTTAACATGGTCTTCAAGTCCTACTTCGTGCAAGTGACTCAACTTTAC
GTCGGCGTTTTCGTTATGGCTGCCTTCATCGTCTACGATACACAGAACAT
TGTGGAGAAGTGCCGAAACGGAAATCGAGATGTGGTGCAGCACGCTTTAG
ATTTGTTCTTCGATGTACTCAGCATGTTCCGCCGTTTGCTGATTATACTG
ACGCAAAAGGAGGAGCGAAAACAGAATGAACGCCGCCAGAACAAAACTAA
ATAAAAGCTTTCTAGACCAT

BS07246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
BI-1-RA 738 CG7188-PA 1..738 17..754 3690 100 Plus
BI-1-RB 714 CG7188-PB 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
BI-1-RA 1107 CG7188-RA 179..917 17..755 3695 100 Plus
BI-1-RB 1247 CG7188-RB 179..871 17..709 3465 100 Plus
BI-1-RB 1247 CG7188-RB 1007..1057 705..755 240 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8308092..8308545 538..85 2270 100 Minus
3L 28110227 3L 8307793..8307965 710..538 865 100 Minus
3L 28110227 3L 8308696..8308763 84..17 340 100 Minus
3L 28110227 3L 8307335..8307382 755..708 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:01:54 has no hits.

BS07246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:04 Download gff for BS07246.complete
Subject Subject Range Query Range Percent Splice Strand
CG7188-RA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:28 Download gff for BS07246.complete
Subject Subject Range Query Range Percent Splice Strand
CG7188-RA 192..944 10..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:59 Download gff for BS07246.complete
Subject Subject Range Query Range Percent Splice Strand
BI-1-RA 179..914 17..752 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:04 Download gff for BS07246.complete
Subject Subject Range Query Range Percent Splice Strand
CG7188-RA 192..944 10..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:45 Download gff for BS07246.complete
Subject Subject Range Query Range Percent Splice Strand
BI-1-RA 179..914 17..752 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:45 Download gff for BS07246.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8307338..8307380 710..752 100 <- Minus
3L 8307794..8307964 539..709 100 <- Minus
3L 8308092..8308545 85..538 100 <- Minus
3L 8308696..8308763 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:59 Download gff for BS07246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8300438..8300480 710..752 100 <- Minus
arm_3L 8300894..8301064 539..709 100 <- Minus
arm_3L 8301192..8301645 85..538 100 <- Minus
arm_3L 8301796..8301863 17..84 100   Minus

BS07246.pep Sequence

Translation from 16 to 753

> BS07246.pep
MADTANYINDRFQTFMNGLGDRYEPYVREHLSKVYMVLGSTAAATAMGAM
LQMRDFLDLGVLAAVATLVLVLGLHFYKDDGKNYYTRLGMLYAFGFCSGQ
TLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLGGML
VSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCR
NGNRDVVQHALDLFFDVLSMFRRLLIILTQKEERKQNERRQNKTK*

BS07246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
BI-1-PA 245 CG7188-PA 1..245 1..245 1239 100 Plus
BI-1-PB 237 CG7188-PB 1..231 1..231 1167 100 Plus
CG1287-PA 365 CG1287-PA 139..364 26..235 166 27.3 Plus