Clone Sequence Records
BS07247.3prime Sequence
920 bp (814 high quality bases) assembled on 2006-01-06
> BS07247.3prime
ATGGTCTAGAAAGCTTTTAAACGGCCGACTCAGATATATCCTTTTGTTCC
TTGTCCTCGACAGCCGACATGCCCACGCCCATGGCGCTAAACAGATTGGA
TACAGGACCTGCGCCGCCAACCTGCGATTGGTAGCTATCCATCATGTTGC
GCAGCGTGTTTACGTTTATATTGATGGGCTCAAAGTCCTCAATGTCATCG
AAATCGTCCTCGTCCGCCTGTGGAGCTGTCTTCTTCTTGCCGTGGAAGGA
CTTGCCCACGCTGGTCTGAGCCAACTCGCGGTCCATCTGCTCCATATACG
ATTGAATCTGTCGATCGAGTGGGAACACACTGCCGCCTCCAGAAAGTGCA
TTTAGATTACTCTCCATGTCGTCCTCGTCCGCGTAGTCGCTCATCTCCGA
GGTGGAGTCCCAGTTGTCCTCGGGTATTACGAAATCCAGGAAATTCCGCA
CATGGGTGCTGTCCGGTTCCTCCGGCTGGATGACGGAATTGCGCTGGCAC
GCCTTGCGCATGGAGGGATTCTTCTTGACCTTTGCTGTCAGTCCTGTGGA
ACCGTTTGCCTGCGGCGGCGGCTCGTCATCGTCTGAGTCCAGTTCTGGCT
CCTCGAGCCCTCGGTGCTCAATGCCCTCGTAGTTGGACTGCCGATCTAAG
AACTCCGCCAGCTGCTTGGTGAACTCCTCGGCATTCATTTGTCCGTTCGG
CTTGTAGAGCTTCTTGGGTCCGTAGCGATCCTGCAGCATGGAGTCTAGAT
CCTCAGCGCTGATATTCAACCACTCATCCGAGTCGCTGGGCTGCAGGTTG
TTCTCCTCATCGCGCAGCTCCTCGGAAGCAGCCTCCGCTGGATGGAGCAA
CAGGTCGAGGATCTCGGCACCCGCTCTGGAGGCTGTGCGGAAACGCTCCT
GGTTTGCCACGAAGTACACC
BS07247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5714-PA | 2055 | ecd-RA | 1168..2055 | 904..17 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ecd-RA | 2204 | CG5714-RA | 1234..2137 | 920..17 | 4475 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2263648..2264535 | 17..904 | 4440 | 100 | Plus |
Blast to na_te.dros performed 2015-02-08 15:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opus | 7521 | opus OPUS 7521bp | 3781..3836 | 139..194 | 108 | 70.2 | Plus |
BS07247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:00 Download gff for
BS07247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-PA | 1152..2055 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:00 Download gff for
BS07247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5714-PA | 1152..2055 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:03:58 Download gff for
BS07247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 1234..2139 | 13..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:42:56 Download gff for
BS07247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 1234..2139 | 13..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:42:56 Download gff for
BS07247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2263646..2264551 | 13..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:03:58 Download gff for
BS07247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2263646..2264551 | 13..920 | 99 | | Plus |
BS07247.complete Sequence
2087 bp assembled on 2008-01-02
GenBank Submission: FJ635785
> BS07247.complete
GAAGTTATCAGTCGACATGAGCAAGATTCCAGGCAGCAATCTGGAGTTCG
TCCGCGAGGAGGACTTCGTGGAGTACTACATCTTTCCCAAGATCCCCGAC
AACGTACAGGATGAGGGCGCGCTGCGCAAACTGATGCTTCAGATCCGCAA
CGAGATCTCGGCCATTGTAAGGGAAAAGTCCTTAGAGCGCAGCTATCTGT
GGCACAAGGACGAGTTTCAGCTTCAGGTGAGGCTGGGCGGCGCCGAGGAG
CGCCTGCTGAACGAGGAGACAAACCCGGAGGAGGAGGCGGAACTGGGCGA
CCTCCCACCGCACTTCCACGGCGTAACCCACTATGGCGACAACATCAGCG
ACGAGTGGTTCGTTGTCTATCTGCTCACGGAGATCACACGTGCACGCGGC
GACTGCATTGCACGGGTGAGCGATTCGGATGGCGAGTTCCTGCTCATCGA
GGCGGCGGACGCCCTGCCCGACTGGGCGTCTCCGGAAACGTGCGAGCAGC
GCGTTTATCTGGTCGGTGGTCACCTGCAGCTTCTCCAGAACTCCGCCGCC
AGCAGCCAGGACAAGCCACTGACCATGGCCATGGCTGTGCAACGTATACG
AATGAATCCCACCCTGTACCGCTGCTCGCAGGAGATACAGTCGTGCATTG
ACGCGCGGCTTAAGGAGTACCAGATCGCTCAGCCGCACTTCTCCATTCAT
CGCCAGGTGCTGGAGCTCCCGCATAGCGCTGCACAGCTTCTGAAACAGAA
GCCAAGGCTGCTCTCCTCGGCGGTTAGGGCTTTCTGCGAGCGGGACTCGC
TGGACATCAAGGCACTTCGCACCATGCGATATTTCCCACCGGAGGCCACA
CGCGTGCGCACCAACGTGCGTTTCACCCGCTGTCTGTACGCCATGTTGTC
GCACCAGCAGTATCTGCCCGAGAAGAGACTCGGCTGGCATCTCACGGATC
CTGTATCCGAGCCGGAACGATATAAGGAACAACTATTGGGCTTGAAGCTG
GCCAGTGGACTGGAGATCCTGGCCACTCAAGCCAAGCGGGTTGAGGGCCA
ACAGCTGGAGGACCTTCCTGCCTGGCGATCGTATCTGCGGAGCTTGCTGA
GCAAGGGCTACTTCCGGGACAACATCGAGGGCAGTGCCGAGTACCAGGAG
CTGCTGAACAAGGCCAAGGTGTACTTTCGTGGCAACCAGGAGCGTTTCCG
CACAGCCTCCAGAGCGGGTGCCGAGATCCTCGACCTGTTGCTCCATCCAG
CGGAGGCTGCTTCCGAGGAGCTGCGCGATGAGGAGAACAACCTGCAGCCC
AGCGACTCGGATGAGTGGTTGAATATCAGCGCTGAGGATCTAGACTCCAT
GCTGCAGGATCGCTACGGACCCAAGAAGCTCTACAAGCCGAACGGACAAA
TGAATGCCGAGGAGTTCACCAAGCAGCTGGCGGAGTTCTTAGATCGGCAG
TCCAACTACGAGGGCATTGAGCACCGAGGGCTCGAGGAGCCAGAACTGGA
CTCAGACGATGACGAGCCGCCGCCGCAGGCAAACGGTTCCACAGGACTGA
CAGCAAAGGTCAAGAAGAATCCCTCCATGCGCAAGGCGTGCCAGCGCAAT
TCCGTCATCCAGCCGGAGGAACCGGACAGCACCCATGTGCGGAATTTCCT
GGATTTCGTAATACCCGAGGACAACTGGGACTCCACCTCGGAGATGAGCG
ACTACGCGGACGAGGACGACATGGAGAGTAATCTAAATGCACTTTCTGGA
GGCGGCAGTGTGTTCCCACTCGATCGACAGATTCAATCGTATATGGAGCA
GATGGACCGCGAGTTGGCTCAGACCAGCGTGGGCAAGTCCTTCCACGGCA
AGAAGAAGACAGCTCCACAGGCGGACGAGGACGATTTCGATGACATTGAG
GACTTTGAGCCCATCAATATAAACGTAAACACGCTGCGCAACATGATGGA
TAGCTACCAATCGCAGGTTGGCGGCGCAGGTCCTGTATCCAATCTGTTTA
GCGCCATGGGCGTGGGCATGTCGGCTGTCGAGGACAAGGAACAAAAGGAT
ATATCTGAGTCGGCCGTTTAAAAGCTTTCTAGACCAT
BS07247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ecd-RA | 2055 | CG5714-PA | 1..2055 | 17..2071 | 10275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ecd-RA | 2204 | CG5714-RA | 83..2137 | 17..2071 | 10275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2263648..2265423 | 2071..296 | 8880 | 100 | Minus |
| 3L | 28110227 | 3L | 2265495..2265775 | 297..17 | 1405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:48:45 has no hits.
BS07247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:05 Download gff for
BS07247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 1..2055 | 17..2071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:17 Download gff for
BS07247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 37..2089 | 17..2069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:16 Download gff for
BS07247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 83..2135 | 17..2069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:05 Download gff for
BS07247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 34..2093 | 10..2075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:08 Download gff for
BS07247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 83..2135 | 17..2069 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:08 Download gff for
BS07247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2263650..2265422 | 297..2069 | 100 | <- | Minus |
| 3L | 2265496..2265775 | 17..296 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:16 Download gff for
BS07247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2263650..2265422 | 297..2069 | 100 | <- | Minus |
| arm_3L | 2265496..2265775 | 17..296 | 100 | | Minus |
BS07247.pep Sequence
Translation from 16 to 2070
> BS07247.pep
MSKIPGSNLEFVREEDFVEYYIFPKIPDNVQDEGALRKLMLQIRNEISAI
VREKSLERSYLWHKDEFQLQVRLGGAEERLLNEETNPEEEAELGDLPPHF
HGVTHYGDNISDEWFVVYLLTEITRARGDCIARVSDSDGEFLLIEAADAL
PDWASPETCEQRVYLVGGHLQLLQNSAASSQDKPLTMAMAVQRIRMNPTL
YRCSQEIQSCIDARLKEYQIAQPHFSIHRQVLELPHSAAQLLKQKPRLLS
SAVRAFCERDSLDIKALRTMRYFPPEATRVRTNVRFTRCLYAMLSHQQYL
PEKRLGWHLTDPVSEPERYKEQLLGLKLASGLEILATQAKRVEGQQLEDL
PAWRSYLRSLLSKGYFRDNIEGSAEYQELLNKAKVYFRGNQERFRTASRA
GAEILDLLLHPAEAASEELRDEENNLQPSDSDEWLNISAEDLDSMLQDRY
GPKKLYKPNGQMNAEEFTKQLAEFLDRQSNYEGIEHRGLEEPELDSDDDE
PPPQANGSTGLTAKVKKNPSMRKACQRNSVIQPEEPDSTHVRNFLDFVIP
EDNWDSTSEMSDYADEDDMESNLNALSGGGSVFPLDRQIQSYMEQMDREL
AQTSVGKSFHGKKKTAPQADEDDFDDIEDFEPININVNTLRNMMDSYQSQ
VGGAGPVSNLFSAMGVGMSAVEDKEQKDISESAV*
BS07247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ecd-PA | 684 | CG5714-PA | 1..684 | 1..684 | 3549 | 100 | Plus |
