Clone BS07248 Report

Search the DGRC for BS07248

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG12239-RA
Protein status:BS07248.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07248.3prime Sequence

959 bp (767 high quality bases) assembled on 2006-01-06

> BS07248.3prime
ATGGTCTAGAAAGCTTCTAGCAACCAATGGCCTGCAAGTAGCCCTGGATC
TGCTCATTCAGTGCATGACCAAATCCCTTGCCGCTGGCCGTGGACTTCTT
GTAGAGAGCGGCCACGAGGAGGATCTGCCCGGTCATCAGCAGTTCTCGTT
TTCCATAGCTCAGCCAGCCTTTGGTTTTCACTTGGGAGTCAAGAAGTACA
CGCTCATCCAAGGGCTCACGAATCGCTCGTCTGGAAAGCTCGCGTTGAAC
ATGATCACGGTCTACTCGTTCCTCACGGCGCTGTACTCGGCGTTCTCGGC
GAAGATCTTCCCTTTGATTATCTCGCTCTTCCCTGCGAAGATCAACTCTT
CGAAAATCAACCCGCTCCTCGTCTCGTTCTTCTCTTCGCAGACCATCGCG
CTCGACTCGACGTGTGTCTTCTCGCTCCTCGCGAGATGTGTCTACTCGGT
CCTCACGACGTGTGTCTTCTCGCTCCTCTCGCCGCTCATTAGTACGGAAC
TCTTCCCCATTTACTCGCCGTTGTATTTCTCTTCGCTCAACTCGTCGGGA
ATCTTCGCGTTCTACTTCCTCTTCGACACGCTCCATTCTGCGCTCTGCTA
CACGTTCCTCGGTACGTTCAGCTTGACGGTCTTCCCTGCGGCTAATACTG
TTTTCAATCCTTCGTCCCTCATCTCGAGCACCGTCGTCTACCACCACTCG
TCGCAAGTCGATTCGACGGAAGGATTCTTGCTCTGCACGGCGAACGTCTT
CATTCGCTTCTCGGCGGTGGGTGACCCTGTCGAGATCTTCATCTTGGTCC
GCACGCCTAGCTGAGTTCCGCTCTTCCCGTCGCTCTACGCTGCGTTCATT
GTCGCGCTCTTCCTTCCGGACTTCGCTTCGTCGAGAGTTGTCTTCGTCAG
ACCTAACATCAAAAACAAATCGAACTCGGTTCTCTCGCTCTTCGCGTCGT
TTCACACGT

BS07248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-PA 1953 CG12239-RA 1019..1953 951..17 4650 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-RA 2343 CG12239-RA 1113..2055 959..17 4670 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5793252..5794142 959..69 4410 99.7 Minus
X 23542271 X 5794203..5794255 69..17 265 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:06:22 has no hits.

BS07248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:01 Download gff for BS07248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-PA 1011..1953 17..959 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:02 Download gff for BS07248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-PA 1011..1953 17..959 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:20:38 Download gff for BS07248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 1113..2055 17..959 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:51 Download gff for BS07248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 1113..2055 17..959 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:51 Download gff for BS07248.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5793252..5794142 69..959 99 -> Minus
X 5794204..5794255 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:20:38 Download gff for BS07248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5688237..5688288 17..68 100   Minus
arm_X 5687285..5688175 69..959 99 -> Minus

BS07248.5prime Sequence

839 bp (828 high quality bases) assembled on 2006-01-06

> BS07248.5prime
GAAGTTATCAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTC
TGCTCCACCTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTC
TGTGGCGACACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGG
CCATCAGCGCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCG
CGGCGGAGAGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGAT
CGCGGCAAGGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCT
GCGACTTGAGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAG
AGCGTGTACAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCA
GCTCGTGAAGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGA
AGCTCGGGAAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGG
ACCGACGTGAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCA
GATCGAGAAGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGA
AGCTCGCGTCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTG
AGCTCCGTGAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAA
GAACGAGTCGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGA
AGCTGACGAAGGACAACGAGATACTCGTAAGATGGAGCGACGTGNGGAGC
GCGAATCGGACAGGCGTGACTTCGAAACTCGGCGACTAG

BS07248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-PA 1953 CG12239-RA 1..823 17..839 4096 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-RA 2343 CG12239-RA 103..925 17..839 4104 99.9 Plus
CG12239-RA 2343 CG12239-RA 390..499 415..524 295 84.5 Plus
CG12239-RA 2343 CG12239-RA 501..610 304..413 295 84.5 Plus
CG12239-RA 2343 CG12239-RA 565..642 509..586 270 89.7 Plus
CG12239-RA 2343 CG12239-RA 595..672 479..556 270 89.7 Plus
CG12239-RA 2343 CG12239-RA 509..612 483..586 190 78.8 Plus
CG12239-RA 2343 CG12239-RA 569..672 423..526 190 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5792242..5793064 17..839 4104 99.9 Plus
X 23542271 X 5792529..5792638 415..524 295 84.5 Plus
X 23542271 X 5792640..5792749 304..413 295 84.5 Plus
X 23542271 X 5792704..5792781 509..586 270 89.7 Plus
X 23542271 X 5792734..5792811 479..556 270 89.7 Plus
X 23542271 X 5792648..5792751 483..586 190 78.8 Plus
X 23542271 X 5792708..5792811 423..526 190 78.8 Plus
Blast to na_te.dros performed on 2015-02-02 10:40:22 has no hits.

BS07248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:02 Download gff for BS07248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-PA 1..823 17..839 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:03 Download gff for BS07248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-PA 1..823 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:31:50 Download gff for BS07248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 98..925 9..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:03 Download gff for BS07248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 98..925 9..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:03 Download gff for BS07248.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5792237..5793064 9..839 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:31:50 Download gff for BS07248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5686270..5687097 9..839 99   Plus

BS07248.complete Sequence

1985 bp assembled on 2008-01-02

GenBank Submission: FJ635786

> BS07248.complete
GAAGTTATCAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTC
TGCTCCACCTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTC
TGTGGCGACACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGG
CCATCAGCGCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCG
CGGCGGAGAGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGAT
CGCGGCAAGGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCT
GCGACTTGAGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAG
AGCGTGTACAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCA
GCTCGTGAAGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGA
AGCTCGGGAAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGG
ACCGACGTGAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCA
GATCGAGAAGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGA
AGCTCGCGTCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTG
AGCTCCGTGAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAA
GAACGAGTCGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGA
AGCTGACGAAGGACAACGAGATACTCGTAAGATGGAGCGACGTGGGGAGC
GCGAATCGGACAGGCGTGACTTCGAAACTCGGCGACTAGCGGCGAACGAA
AGACGAGTTGAACGCCGAGTAGAACGCGAAATGTCCAGACGTGAGGAACG
CATTAATCGCCGTGACGATCGAACTAGTCTAGACATGGATTTGTCCCGAC
GCATGGAACGTGAACAGACTGAGCGAGACTCTGAGGAACGCATCGAGAGC
GACAATCATCGACGAGCAGAAGATCGACGTGTTGAACGACGCGAAGAGCG
AGAGAACCGAGTTCGATTTGTTTTTGATGTTAGGTCTGACGAAGACAACT
CTCGACGAAGCGAAGTCCGGAAGGAAGAGCGCGACAATGAACGCAGCGTA
GAGCGACGGGAAGAGCGGAACTCAGCTAGGCGTGCGGACCAAGATGAAGA
TCTCGACAGGGTCAACCACCGCCGAGAAGCGAATGAAGACGTTCGCCGTG
CAGAGCAAGAATCCTTCCGTCGAATCGACTTGCGACGAGTGGTGGTAGAC
GACGGTGCTCGAGATGAGGGACGAAGGATTGAAAACAGTATTAGCCGCAG
GGAAGACCGTCAAGCTGAACGTACCGAGGAACGTGTAGCAGAGCGCAGAA
TGGAGCGTGTCGAAGAGGAAGTAGAACGCGAAGATTCCCGACGAGTTGAG
CGAAGAGAAATACAACGGCGAGTAAATGGGGAAGAGTTCCGTACTAATGA
GCGGCGAGAGGAGCGAGAAGACACACGTCGTGAGGACCGAGTAGACACAT
CTCGCGAGGAGCGAGAAGACACACGTCGAGTCGAGCGCGATGGTCTGCGA
AGAGAAGAACGAGACGAGGAGCGGGTTGATTTTCGAAGAGTTGATCTTCG
CAGGGAAGAGCGAGATAATCAAAGGGAAGATCTTCGCCGAGAACGCCGAG
TACAGCGCCGTGAGGAACGAGTAGACCGTGATCATGTTCAACGCGAGCTT
TCCAGACGAGCGATTCGTGAGCCCTTGGATGAGCGTGTACTTCTTGACTC
CCAAGTGAAAACCAAAGGCTGGCTGAGCTATGGAAAACGAGAACTGCTGA
TGACCGGGCAGATCCTCCTCGTGGCCGCTCTCTACAAGAAGTCCACGGCC
AGCGGCAAGGGATTTGGTCATGCACTGAATGAGCAGATCCAGGGCTACTT
GCAGGCCATTGGTTGCTAGAAGCTTTCTAGACCAT

BS07248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-RA 1953 CG12239-PA 1..1953 17..1969 9765 100 Plus
CG12239-RA 1953 CG12239-PA 288..397 415..524 295 84.5 Plus
CG12239-RA 1953 CG12239-PA 399..508 304..413 295 84.5 Plus
CG12239-RA 1953 CG12239-PA 463..540 509..586 270 89.7 Plus
CG12239-RA 1953 CG12239-PA 493..570 479..556 270 89.7 Plus
CG12239-RA 1953 CG12239-PA 407..510 483..586 190 78.8 Plus
CG12239-RA 1953 CG12239-PA 467..570 423..526 190 78.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-RA 2343 CG12239-RA 103..2055 17..1969 9765 100 Plus
CG12239-RA 2343 CG12239-RA 501..610 304..413 295 84.5 Plus
CG12239-RA 2343 CG12239-RA 390..499 415..524 295 84.5 Plus
CG12239-RA 2343 CG12239-RA 565..642 509..586 270 89.7 Plus
CG12239-RA 2343 CG12239-RA 595..672 479..556 270 89.7 Plus
CG12239-RA 2343 CG12239-RA 509..612 483..586 190 78.8 Plus
CG12239-RA 2343 CG12239-RA 569..672 423..526 190 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5792242..5794142 17..1917 9505 100 Plus
X 23542271 X 5792529..5792638 415..524 295 84.5 Plus
X 23542271 X 5792640..5792749 304..413 295 84.5 Plus
X 23542271 X 5792734..5792811 479..556 270 89.7 Plus
X 23542271 X 5792704..5792781 509..586 270 89.7 Plus
X 23542271 X 5794203..5794255 1917..1969 265 100 Plus
X 23542271 X 5792648..5792751 483..586 190 78.8 Plus
X 23542271 X 5792708..5792811 423..526 190 78.8 Plus
Blast to na_te.dros performed on 2014-11-27 20:02:55 has no hits.

BS07248.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:06 Download gff for BS07248.complete
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 1..1953 17..1969 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:00 Download gff for BS07248.complete
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 96..2048 17..1969 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:08 Download gff for BS07248.complete
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 103..2055 17..1969 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:06 Download gff for BS07248.complete
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 91..2048 9..1969 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:29 Download gff for BS07248.complete
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 103..2055 17..1969 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:29 Download gff for BS07248.complete
Subject Subject Range Query Range Percent Splice Strand
X 5794204..5794255 1918..1969 100   Plus
X 5792242..5794142 17..1917 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:08 Download gff for BS07248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5686275..5688175 17..1917 100 -> Plus
arm_X 5688237..5688288 1918..1969 100   Plus

BS07248.pep Sequence

Translation from 16 to 1968

> BS07248.pep
MMRQRLSVLLLLLHLGCLTLAWASSRHFCGDTSGRDICNDGRWDGHQRQD
DYDEHMVYRQGAAESQRRDRVDSVARDDRGKERREETRVRLDSSLRLEAR
EARNERRETREERVQPRETREVRVDRRAAREDQLDAREARDERREAREER
VQALETREARVDRRESREDREDRRESRADREDRRESREDRLEGREARVQR
VEQREARDNQVELREIREIREHRRVTPEERVEQRGIREDRVERHEADEGQ
RDTRKMERRGERESDRRDFETRRLAANERRVERRVEREMSRREERINRRD
DRTSLDMDLSRRMEREQTERDSEERIESDNHRRAEDRRVERREERENRVR
FVFDVRSDEDNSRRSEVRKEERDNERSVERREERNSARRADQDEDLDRVN
HRREANEDVRRAEQESFRRIDLRRVVVDDGARDEGRRIENSISRREDRQA
ERTEERVAERRMERVEEEVEREDSRRVERREIQRRVNGEEFRTNERREER
EDTRREDRVDTSREEREDTRRVERDGLRREERDEERVDFRRVDLRREERD
NQREDLRRERRVQRREERVDRDHVQRELSRRAIREPLDERVLLDSQVKTK
GWLSYGKRELLMTGQILLVAALYKKSTASGKGFGHALNEQIQGYLQAIGC
*

BS07248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-PA 650 CG12239-PA 1..650 1..650 3282 100 Plus
CG2839-PA 826 CG2839-PA 266..742 86..581 533 28.5 Plus
CG2839-PA 826 CG2839-PA 263..753 101..604 522 29 Plus
CG2839-PA 826 CG2839-PA 276..743 64..577 519 29.7 Plus
CG2839-PA 826 CG2839-PA 227..737 97..600 514 28.7 Plus
CG2839-PA 826 CG2839-PA 286..748 59..554 500 29 Plus
CG2839-PA 826 CG2839-PA 347..772 47..500 425 27.4 Plus
eIF3-S10-PD 1140 CG9805-PD 479..1078 42..572 319 23.5 Plus
eIF3-S10-PA 1140 CG9805-PA 479..1078 42..572 319 23.5 Plus
CG2839-PA 826 CG2839-PA 430..744 42..383 318 28.6 Plus
rgn-PD 800 CG6014-PD 231..789 39..580 310 22.9 Plus
CG2839-PA 826 CG2839-PA 478..794 64..370 280 23.8 Plus
CG2839-PA 826 CG2839-PA 484..792 64..384 265 25.1 Plus
CG2839-PA 826 CG2839-PA 500..749 42..299 228 27.2 Plus
CG2839-PA 826 CG2839-PA 526..749 40..279 200 24.2 Plus
eIF3-S10-PD 1140 CG9805-PD 502..889 181..588 176 20.6 Plus
eIF3-S10-PA 1140 CG9805-PA 502..889 181..588 176 20.6 Plus