Clone Sequence Records
BS07248.3prime Sequence
959 bp (767 high quality bases) assembled on 2006-01-06
> BS07248.3prime
ATGGTCTAGAAAGCTTCTAGCAACCAATGGCCTGCAAGTAGCCCTGGATC
TGCTCATTCAGTGCATGACCAAATCCCTTGCCGCTGGCCGTGGACTTCTT
GTAGAGAGCGGCCACGAGGAGGATCTGCCCGGTCATCAGCAGTTCTCGTT
TTCCATAGCTCAGCCAGCCTTTGGTTTTCACTTGGGAGTCAAGAAGTACA
CGCTCATCCAAGGGCTCACGAATCGCTCGTCTGGAAAGCTCGCGTTGAAC
ATGATCACGGTCTACTCGTTCCTCACGGCGCTGTACTCGGCGTTCTCGGC
GAAGATCTTCCCTTTGATTATCTCGCTCTTCCCTGCGAAGATCAACTCTT
CGAAAATCAACCCGCTCCTCGTCTCGTTCTTCTCTTCGCAGACCATCGCG
CTCGACTCGACGTGTGTCTTCTCGCTCCTCGCGAGATGTGTCTACTCGGT
CCTCACGACGTGTGTCTTCTCGCTCCTCTCGCCGCTCATTAGTACGGAAC
TCTTCCCCATTTACTCGCCGTTGTATTTCTCTTCGCTCAACTCGTCGGGA
ATCTTCGCGTTCTACTTCCTCTTCGACACGCTCCATTCTGCGCTCTGCTA
CACGTTCCTCGGTACGTTCAGCTTGACGGTCTTCCCTGCGGCTAATACTG
TTTTCAATCCTTCGTCCCTCATCTCGAGCACCGTCGTCTACCACCACTCG
TCGCAAGTCGATTCGACGGAAGGATTCTTGCTCTGCACGGCGAACGTCTT
CATTCGCTTCTCGGCGGTGGGTGACCCTGTCGAGATCTTCATCTTGGTCC
GCACGCCTAGCTGAGTTCCGCTCTTCCCGTCGCTCTACGCTGCGTTCATT
GTCGCGCTCTTCCTTCCGGACTTCGCTTCGTCGAGAGTTGTCTTCGTCAG
ACCTAACATCAAAAACAAATCGAACTCGGTTCTCTCGCTCTTCGCGTCGT
TTCACACGT
BS07248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-PA | 1953 | CG12239-RA | 1019..1953 | 951..17 | 4650 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-RA | 2343 | CG12239-RA | 1113..2055 | 959..17 | 4670 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5793252..5794142 | 959..69 | 4410 | 99.7 | Minus |
X | 23542271 | X | 5794203..5794255 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:06:22 has no hits.
BS07248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:01 Download gff for
BS07248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-PA | 1011..1953 | 17..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:02 Download gff for
BS07248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-PA | 1011..1953 | 17..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:20:38 Download gff for
BS07248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 1113..2055 | 17..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:51 Download gff for
BS07248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 1113..2055 | 17..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:51 Download gff for
BS07248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5793252..5794142 | 69..959 | 99 | -> | Minus |
X | 5794204..5794255 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:20:38 Download gff for
BS07248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5688237..5688288 | 17..68 | 100 | | Minus |
arm_X | 5687285..5688175 | 69..959 | 99 | -> | Minus |
BS07248.5prime Sequence
839 bp (828 high quality bases) assembled on 2006-01-06
> BS07248.5prime
GAAGTTATCAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTC
TGCTCCACCTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTC
TGTGGCGACACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGG
CCATCAGCGCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCG
CGGCGGAGAGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGAT
CGCGGCAAGGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCT
GCGACTTGAGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAG
AGCGTGTACAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCA
GCTCGTGAAGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGA
AGCTCGGGAAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGG
ACCGACGTGAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCA
GATCGAGAAGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGA
AGCTCGCGTCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTG
AGCTCCGTGAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAA
GAACGAGTCGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGA
AGCTGACGAAGGACAACGAGATACTCGTAAGATGGAGCGACGTGNGGAGC
GCGAATCGGACAGGCGTGACTTCGAAACTCGGCGACTAG
BS07248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-PA | 1953 | CG12239-RA | 1..823 | 17..839 | 4096 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-RA | 2343 | CG12239-RA | 103..925 | 17..839 | 4104 | 99.9 | Plus |
CG12239-RA | 2343 | CG12239-RA | 390..499 | 415..524 | 295 | 84.5 | Plus |
CG12239-RA | 2343 | CG12239-RA | 501..610 | 304..413 | 295 | 84.5 | Plus |
CG12239-RA | 2343 | CG12239-RA | 565..642 | 509..586 | 270 | 89.7 | Plus |
CG12239-RA | 2343 | CG12239-RA | 595..672 | 479..556 | 270 | 89.7 | Plus |
CG12239-RA | 2343 | CG12239-RA | 509..612 | 483..586 | 190 | 78.8 | Plus |
CG12239-RA | 2343 | CG12239-RA | 569..672 | 423..526 | 190 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5792242..5793064 | 17..839 | 4104 | 99.9 | Plus |
X | 23542271 | X | 5792529..5792638 | 415..524 | 295 | 84.5 | Plus |
X | 23542271 | X | 5792640..5792749 | 304..413 | 295 | 84.5 | Plus |
X | 23542271 | X | 5792704..5792781 | 509..586 | 270 | 89.7 | Plus |
X | 23542271 | X | 5792734..5792811 | 479..556 | 270 | 89.7 | Plus |
X | 23542271 | X | 5792648..5792751 | 483..586 | 190 | 78.8 | Plus |
X | 23542271 | X | 5792708..5792811 | 423..526 | 190 | 78.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:40:22 has no hits.
BS07248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:02 Download gff for
BS07248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:03 Download gff for
BS07248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:31:50 Download gff for
BS07248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 98..925 | 9..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:03 Download gff for
BS07248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 98..925 | 9..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:03 Download gff for
BS07248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5792237..5793064 | 9..839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:31:50 Download gff for
BS07248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5686270..5687097 | 9..839 | 99 | | Plus |
BS07248.complete Sequence
1985 bp assembled on 2008-01-02
GenBank Submission: FJ635786
> BS07248.complete
GAAGTTATCAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTC
TGCTCCACCTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTC
TGTGGCGACACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGG
CCATCAGCGCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCG
CGGCGGAGAGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGAT
CGCGGCAAGGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCT
GCGACTTGAGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAG
AGCGTGTACAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCA
GCTCGTGAAGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGA
AGCTCGGGAAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGG
ACCGACGTGAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCA
GATCGAGAAGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGA
AGCTCGCGTCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTG
AGCTCCGTGAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAA
GAACGAGTCGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGA
AGCTGACGAAGGACAACGAGATACTCGTAAGATGGAGCGACGTGGGGAGC
GCGAATCGGACAGGCGTGACTTCGAAACTCGGCGACTAGCGGCGAACGAA
AGACGAGTTGAACGCCGAGTAGAACGCGAAATGTCCAGACGTGAGGAACG
CATTAATCGCCGTGACGATCGAACTAGTCTAGACATGGATTTGTCCCGAC
GCATGGAACGTGAACAGACTGAGCGAGACTCTGAGGAACGCATCGAGAGC
GACAATCATCGACGAGCAGAAGATCGACGTGTTGAACGACGCGAAGAGCG
AGAGAACCGAGTTCGATTTGTTTTTGATGTTAGGTCTGACGAAGACAACT
CTCGACGAAGCGAAGTCCGGAAGGAAGAGCGCGACAATGAACGCAGCGTA
GAGCGACGGGAAGAGCGGAACTCAGCTAGGCGTGCGGACCAAGATGAAGA
TCTCGACAGGGTCAACCACCGCCGAGAAGCGAATGAAGACGTTCGCCGTG
CAGAGCAAGAATCCTTCCGTCGAATCGACTTGCGACGAGTGGTGGTAGAC
GACGGTGCTCGAGATGAGGGACGAAGGATTGAAAACAGTATTAGCCGCAG
GGAAGACCGTCAAGCTGAACGTACCGAGGAACGTGTAGCAGAGCGCAGAA
TGGAGCGTGTCGAAGAGGAAGTAGAACGCGAAGATTCCCGACGAGTTGAG
CGAAGAGAAATACAACGGCGAGTAAATGGGGAAGAGTTCCGTACTAATGA
GCGGCGAGAGGAGCGAGAAGACACACGTCGTGAGGACCGAGTAGACACAT
CTCGCGAGGAGCGAGAAGACACACGTCGAGTCGAGCGCGATGGTCTGCGA
AGAGAAGAACGAGACGAGGAGCGGGTTGATTTTCGAAGAGTTGATCTTCG
CAGGGAAGAGCGAGATAATCAAAGGGAAGATCTTCGCCGAGAACGCCGAG
TACAGCGCCGTGAGGAACGAGTAGACCGTGATCATGTTCAACGCGAGCTT
TCCAGACGAGCGATTCGTGAGCCCTTGGATGAGCGTGTACTTCTTGACTC
CCAAGTGAAAACCAAAGGCTGGCTGAGCTATGGAAAACGAGAACTGCTGA
TGACCGGGCAGATCCTCCTCGTGGCCGCTCTCTACAAGAAGTCCACGGCC
AGCGGCAAGGGATTTGGTCATGCACTGAATGAGCAGATCCAGGGCTACTT
GCAGGCCATTGGTTGCTAGAAGCTTTCTAGACCAT
BS07248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-RA | 1953 | CG12239-PA | 1..1953 | 17..1969 | 9765 | 100 | Plus |
CG12239-RA | 1953 | CG12239-PA | 288..397 | 415..524 | 295 | 84.5 | Plus |
CG12239-RA | 1953 | CG12239-PA | 399..508 | 304..413 | 295 | 84.5 | Plus |
CG12239-RA | 1953 | CG12239-PA | 463..540 | 509..586 | 270 | 89.7 | Plus |
CG12239-RA | 1953 | CG12239-PA | 493..570 | 479..556 | 270 | 89.7 | Plus |
CG12239-RA | 1953 | CG12239-PA | 407..510 | 483..586 | 190 | 78.8 | Plus |
CG12239-RA | 1953 | CG12239-PA | 467..570 | 423..526 | 190 | 78.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-RA | 2343 | CG12239-RA | 103..2055 | 17..1969 | 9765 | 100 | Plus |
CG12239-RA | 2343 | CG12239-RA | 501..610 | 304..413 | 295 | 84.5 | Plus |
CG12239-RA | 2343 | CG12239-RA | 390..499 | 415..524 | 295 | 84.5 | Plus |
CG12239-RA | 2343 | CG12239-RA | 565..642 | 509..586 | 270 | 89.7 | Plus |
CG12239-RA | 2343 | CG12239-RA | 595..672 | 479..556 | 270 | 89.7 | Plus |
CG12239-RA | 2343 | CG12239-RA | 509..612 | 483..586 | 190 | 78.8 | Plus |
CG12239-RA | 2343 | CG12239-RA | 569..672 | 423..526 | 190 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5792242..5794142 | 17..1917 | 9505 | 100 | Plus |
X | 23542271 | X | 5792529..5792638 | 415..524 | 295 | 84.5 | Plus |
X | 23542271 | X | 5792640..5792749 | 304..413 | 295 | 84.5 | Plus |
X | 23542271 | X | 5792734..5792811 | 479..556 | 270 | 89.7 | Plus |
X | 23542271 | X | 5792704..5792781 | 509..586 | 270 | 89.7 | Plus |
X | 23542271 | X | 5794203..5794255 | 1917..1969 | 265 | 100 | Plus |
X | 23542271 | X | 5792648..5792751 | 483..586 | 190 | 78.8 | Plus |
X | 23542271 | X | 5792708..5792811 | 423..526 | 190 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:02:55 has no hits.
BS07248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:06 Download gff for
BS07248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 1..1953 | 17..1969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:00 Download gff for
BS07248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 96..2048 | 17..1969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:08 Download gff for
BS07248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 103..2055 | 17..1969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:06 Download gff for
BS07248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 91..2048 | 9..1969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:29 Download gff for
BS07248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 103..2055 | 17..1969 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:29 Download gff for
BS07248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5794204..5794255 | 1918..1969 | 100 | | Plus |
X | 5792242..5794142 | 17..1917 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:08 Download gff for
BS07248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5686275..5688175 | 17..1917 | 100 | -> | Plus |
arm_X | 5688237..5688288 | 1918..1969 | 100 | | Plus |
BS07248.pep Sequence
Translation from 16 to 1968
> BS07248.pep
MMRQRLSVLLLLLHLGCLTLAWASSRHFCGDTSGRDICNDGRWDGHQRQD
DYDEHMVYRQGAAESQRRDRVDSVARDDRGKERREETRVRLDSSLRLEAR
EARNERRETREERVQPRETREVRVDRRAAREDQLDAREARDERREAREER
VQALETREARVDRRESREDREDRRESRADREDRRESREDRLEGREARVQR
VEQREARDNQVELREIREIREHRRVTPEERVEQRGIREDRVERHEADEGQ
RDTRKMERRGERESDRRDFETRRLAANERRVERRVEREMSRREERINRRD
DRTSLDMDLSRRMEREQTERDSEERIESDNHRRAEDRRVERREERENRVR
FVFDVRSDEDNSRRSEVRKEERDNERSVERREERNSARRADQDEDLDRVN
HRREANEDVRRAEQESFRRIDLRRVVVDDGARDEGRRIENSISRREDRQA
ERTEERVAERRMERVEEEVEREDSRRVERREIQRRVNGEEFRTNERREER
EDTRREDRVDTSREEREDTRRVERDGLRREERDEERVDFRRVDLRREERD
NQREDLRRERRVQRREERVDRDHVQRELSRRAIREPLDERVLLDSQVKTK
GWLSYGKRELLMTGQILLVAALYKKSTASGKGFGHALNEQIQGYLQAIGC
*
BS07248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-PA | 650 | CG12239-PA | 1..650 | 1..650 | 3282 | 100 | Plus |
CG2839-PA | 826 | CG2839-PA | 266..742 | 86..581 | 533 | 28.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 263..753 | 101..604 | 522 | 29 | Plus |
CG2839-PA | 826 | CG2839-PA | 276..743 | 64..577 | 519 | 29.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 227..737 | 97..600 | 514 | 28.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 286..748 | 59..554 | 500 | 29 | Plus |
CG2839-PA | 826 | CG2839-PA | 347..772 | 47..500 | 425 | 27.4 | Plus |
eIF3-S10-PD | 1140 | CG9805-PD | 479..1078 | 42..572 | 319 | 23.5 | Plus |
eIF3-S10-PA | 1140 | CG9805-PA | 479..1078 | 42..572 | 319 | 23.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 430..744 | 42..383 | 318 | 28.6 | Plus |
rgn-PD | 800 | CG6014-PD | 231..789 | 39..580 | 310 | 22.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 478..794 | 64..370 | 280 | 23.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 484..792 | 64..384 | 265 | 25.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 500..749 | 42..299 | 228 | 27.2 | Plus |
CG2839-PA | 826 | CG2839-PA | 526..749 | 40..279 | 200 | 24.2 | Plus |
eIF3-S10-PD | 1140 | CG9805-PD | 502..889 | 181..588 | 176 | 20.6 | Plus |
eIF3-S10-PA | 1140 | CG9805-PA | 502..889 | 181..588 | 176 | 20.6 | Plus |