Clone BS07250 Report

Search the DGRC for BS07250

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptdaw-RA
Protein status:BS07250.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07250.3prime Sequence

892 bp (862 high quality bases) assembled on 2006-01-06

> BS07250.3prime
ATGGTCTAGAAAGCTTCTATCTGCAGCCACATGACTCCACCACCATGTTG
GGCAGCGTCTTCACCGTCGCCGTGTTGCTCGAGTCCATCACGACCAGCTG
CAGCGAGGAATACTGTTTGGCGGTGCAGCAGGGCACCAACTCCAGCGACT
TGTTAGCACCGCTCGTGGAGAGAATTTTCATTATGGAACTGTGGTGGGAG
GCCGCTTGCGTAACACTCGCCACCGAGCTACAGGATCCGCGACAGAAGTA
GGCATTGTAGCCCTCCGGCTTCAGGATCCAGTTGCTCCAGCCGATGTCCC
GGAATGATATGTACAGGTGCTCCCGACAGCACTCGGTCATTCCGCTGGAG
CAGTTGATGCTGCGCTTCTGGCGACTCTTGCGCCGCCTGTTCTGCATGTC
GATCACGATGAATGGCCGGTAATCCTTGTCCACCGAAATGATCTCCTCCA
TGTCGCTGACATCGCAGCCACCGCAGGTGATTTGGATGAGGTGGCTCAGC
TCGTGGCCACTGATCCAGTGTTTGATGGGCCACTCAATGTCGATCTTCAT
CCACTCATCTTGCACATTCACCGACTGGATGGCTATGGTCTTGGCCGCCG
ACAAATACTTGGAGTCCTTCTGCTGATCCACCTCCACCTCGGAGACTACG
ATCGTCTGCTGGGCACTGGTGCTGTTCACCGATGCCGTGTCGGTGCGGTT
CTGTTTGTTCTTGAAGAGCCACAGGACGGCGGTGCTCACGTCGAAGCCCT
CGGCATCTGCGTCGTCTATCTTGAAGGTGAAGCACATGGACGGATTGGAT
TTTCCATCTCTCGCTCGGTTGCACTCGACCTCCTCTCTATTGAGCAGTAT
GAACTTCTTGCTAGTGCGAGCGTAGTAATCGTCCAGCTCCCT

BS07250.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG16987-PB 1761 Alp23B-RB 888..1761 890..17 4370 100 Minus
CG16987-PA 1761 Alp23B-RA 888..1761 890..17 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
daw-RC 3050 CG16987-RC 1560..2434 890..16 4375 100 Minus
daw-RA 2693 CG16987-RA 1434..2308 890..16 4375 100 Minus
daw-RB 2819 CG16987-RB 1560..2434 890..16 4375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2811147..2811528 560..179 1910 100 Minus
2L 23513712 2L 2810366..2810643 836..559 1390 100 Minus
2L 23513712 2L 2811597..2811760 179..16 820 100 Minus
2L 23513712 2L 2810198..2810253 890..835 280 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:01:18 has no hits.

BS07250.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:05 Download gff for BS07250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16987-PA 886..1761 17..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:07 Download gff for BS07250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16987-PA 886..1761 17..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:01:17 Download gff for BS07250.3prime
Subject Subject Range Query Range Percent Splice Strand
daw-RB 1558..2434 16..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:33 Download gff for BS07250.3prime
Subject Subject Range Query Range Percent Splice Strand
daw-RB 1558..2434 16..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:33 Download gff for BS07250.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2810196..2810253 835..892 98 -> Minus
2L 2810368..2810643 559..834 100 -> Minus
2L 2811149..2811528 179..558 100 -> Minus
2L 2811598..2811760 16..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:01:17 Download gff for BS07250.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2810196..2810253 835..892 98 -> Minus
arm_2L 2810368..2810643 559..834 100 -> Minus
arm_2L 2811149..2811528 179..558 100 -> Minus
arm_2L 2811598..2811760 16..178 100   Minus

BS07250.5prime Sequence

952 bp (796 high quality bases) assembled on 2006-01-06

> BS07250.5prime
GAAGTTATCAGTCGACATGGCCAAGTACTTTATAGCCCTGGTGTTGCTGG
TGTGTCTGGCCCTGGAGAACAGGAACGTATACAATCGCCTGCACGCCCGC
TCCCATCCGAGTTCCCGTGGCGACATCCTTCGTCCGCATCCTAAGCACCA
GCCGCATCCCCATGTGCAGCACACCTCGCAACAGCTGCAGCAGCAACACC
ATATCCGGCAGCAACGATCCCGTCAGCTGAAACACCTGGAACCGGATCCG
ACCAGCGAGGAGGACGATGTACCGATCACCAAGCGGGAGTACTATGCCCG
CCTGAGGCGCCACGTCATCCACAAGAGGCAGCACCTCCTGCAGCAGGAGC
TCAGCTACAACCATCCCGGCTCCCATTCGGAGCAGCTAAAGGTGCCCCGC
CTGTGGCAACACCTCATGGAGCAGGAGGAGAAGGCACACCGACATGTGAG
CCCGCCCGTGGAGTTGCCTATCATGTACGGAGATGCCCCCGAGGAGTCAT
CCCTCTCCTCCGATGATCACTTTGATGATCTGTCGCCGCTGGACTTTGTG
CGCAACGAACTGATGGCCGAGGACCAGCAGAATCAGGAGAAGGATCTCGA
TCTCGATCTGGACCTAGATCAGCAGCCGGAAACGCCCATAGAGCCAGAGC
TCCCATTGGGTGAGAGGAACATCACCATTTCGGTGAAGTCCAGCGCCGGA
GGATGCCCCAAGTGCGAGAGCAATCGCCAAGTGGAGCACATCACCGAGGA
GCAGCTGACCCACTTACGCATCGAGTTCGTTAAGCAGCAGATCCTGGAGA
AGCTGCGCCTCAAGGAGAGCCCCAAGGTGTCGGCCGTGGAGCTGCCCAAG
CCCATCTTCGACGGGATGACACTCTCCCATCCGGACGATAGCACCAAGAA
CAAGGAGCTGGACGATTACTACGCTCGCACTAGCAAGAAGTTCATACTGC
TC

BS07250.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG16987-PB 1761 Alp23B-RB 1..936 17..952 4680 100 Plus
CG16987-PA 1761 Alp23B-RA 1..936 17..952 4680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
daw-RC 3050 CG16987-RC 673..1608 17..952 4680 100 Plus
daw-RA 2693 CG16987-RA 547..1482 17..952 4680 100 Plus
daw-RB 2819 CG16987-RB 673..1608 17..952 4680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2809311..2810246 17..952 4680 100 Plus
Blast to na_te.dros performed 2015-02-11 11:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6924 147..356 173 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6865 134..255 173 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2274..2608 99..444 169 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2595..2898 143..451 162 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2416..2514 144..242 161 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6839 134..248 161 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6899 134..236 157 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6886 134..258 149 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2480 134..250 143 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2987 143..363 137 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..7100 144..452 127 54.9 Plus
roo 9092 roo DM_ROO 9092bp 1085..1167 134..216 127 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6908 178..361 121 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1510..1587 159..236 120 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2895 146..238 118 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1505..1591 135..219 115 60.9 Plus
roo 9092 roo DM_ROO 9092bp 1061..1142 134..215 113 59.8 Plus

BS07250.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:06 Download gff for BS07250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16987-PA 1..936 17..952 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:08 Download gff for BS07250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16987-PA 1..936 17..952 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:13 Download gff for BS07250.5prime
Subject Subject Range Query Range Percent Splice Strand
daw-RB 663..1608 7..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:56:17 Download gff for BS07250.5prime
Subject Subject Range Query Range Percent Splice Strand
daw-RB 663..1608 7..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:56:17 Download gff for BS07250.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2809301..2810246 7..952 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:13 Download gff for BS07250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2809301..2810246 7..952 99   Plus

BS07250.complete Sequence

1793 bp assembled on 2008-01-02

GenBank Submission: FJ635787

> BS07250.complete
GAAGTTATCAGTCGACATGGCCAAGTACTTTATAGCCCTGGTGTTGCTGG
TGTGTCTGGCCCTGGAGAACAGGAACGTATACAATCGCCTGCACGCCCGC
TCCCATCCGAGTTCCCGTGGCGACATCCTTCGTCCGCATCCTAAGCACCA
GCCGCATCCCCATGTGCAGCACACCTCGCAACAGCTGCAGCAGCAACACC
ATATCCGGCAGCAACGATCCCGTCAGCTGAAACACCTGGAACCGGATCCG
ACCAGCGAGGAGGACGATGTACCGATCACCAAGCGGGAGTACTATGCCCG
CCTGAGGCGCCACGTCATCCACAAGAGGCAGCACCTCCTGCAGCAGGAGC
TCAGCTACAACCATCCCGGCTCCCATTCGGAGCAGCTAAAGGTGCCCCGC
CTGTGGCAACACCTCATGGAGCAGGAGGAGAAGGCACACCGACATGTGAG
CCCGCCCGTGGAGTTGCCTATCATGTACGGAGATGCCCCCGAGGAGTCAT
CCCTCTCCTCCGATGATCACTTTGATGATCTGTCGCCGCTGGACTTTGTG
CGCAACGAACTGATGGCCGAGGACCAGCAGAATCAGGAGAAGGATCTCGA
TCTCGATCTGGACCTAGATCAGCAGCCGGAAACGCCCATAGAGCCAGAGC
TCCCATTGGGTGAGAGGAACATCACCATTTCGGTGAAGTCCAGCGCCGGA
GGATGCCCCAAGTGCGAGAGCAATCGCCAAGTGGAGCACATCACCGAGGA
GCAGCTGACCCACTTACGCATCGAGTTCGTTAAGCAGCAGATCCTGGAGA
AGCTGCGCCTCAAGGAGAGCCCCAAGGTGTCGGCCGTGGAGCTGCCCAAG
CCCATCTTCGACGGGATGACACTCTCCCATCCGGACGATAGCACCAAGAA
CAAGGAGCTGGACGATTACTACGCTCGCACTAGCAAGAAGTTCATACTGC
TCAATAGAGAGGAGGTCGAGTGCAACCGAGCGAGAGATGGAAAATCCAAT
CCGTCCATGTGCTTCACCTTCAAGATAGACGACGCAGATGCCGAGGGCTT
CGACGTGAGCACCGCCGTCCTGTGGCTCTTCAAGAACAAACAGAACCGCA
CCGACACGGCATCGGTGAACAGCACCAGTGCCCAGCAGACGATCGTAGTC
TCCGAGGTGGAGGTGGATCAGCAGAAGGACTCCAAGTATTTGTCGGCGGC
CAAGACCATAGCCATCCAGTCGGTGAATGTGCAAGATGAGTGGATGAAGA
TCGACATTGAGTGGCCCATCAAACACTGGATCAGTGGCCACGAGCTGAGC
CACCTCATCCAAATCACCTGCGGTGGCTGCGATGTCAGCGACATGGAGGA
GATCATTTCGGTGGACAAGGATTACCGGCCATTCATCGTGATCGACATGC
AGAACAGGCGGCGCAAGAGTCGCCAGAAGCGCAGCATCAACTGCTCCAGC
GGAATGACCGAGTGCTGTCGGGAGCACCTGTACATATCATTCCGGGACAT
CGGCTGGAGCAACTGGATCCTGAAGCCGGAGGGCTACAATGCCTACTTCT
GTCGCGGATCCTGTAGCTCGGTGGCGAGTGTTACGCAAGCGGCCTCCCAC
CACAGTTCCATAATGAAAATTCTCTCCACGAGCGGTGCTAACAAGTCGCT
GGAGTTGGTGCCCTGCTGCACCGCCAAACAGTATTCCTCGCTGCAGCTGG
TCGTGATGGACTCGAGCAACACGGCGACGGTGAAGACGCTGCCCAACATG
GTGGTGGAGTCATGTGGCTGCAGATAGAAGCTTTCTAGACCAT

BS07250.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
daw-RC 1761 CG16987-PC 1..1761 17..1777 8805 100 Plus
daw-RA 1761 CG16987-PA 1..1761 17..1777 8805 100 Plus
daw-RB 1761 CG16987-PB 1..1761 17..1777 8805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
daw-RC 3050 CG16987-RC 673..2434 17..1778 8810 100 Plus
daw-RA 2693 CG16987-RA 547..2308 17..1778 8810 100 Plus
daw-RB 2819 CG16987-RB 673..2434 17..1778 8810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2809311..2810253 17..959 4715 100 Plus
2L 23513712 2L 2811147..2811528 1234..1615 1910 100 Plus
2L 23513712 2L 2810366..2810643 958..1235 1390 100 Plus
2L 23513712 2L 2811597..2811760 1615..1778 820 100 Plus
Blast to na_te.dros performed 2014-11-26 14:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6924 147..356 173 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6865 134..255 173 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2274..2608 99..444 169 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2595..2898 143..451 162 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2416..2514 144..242 161 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6839 134..248 161 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6899 134..236 157 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6886 134..258 149 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2480 134..250 143 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2987 143..363 137 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..7100 144..452 127 54.9 Plus
roo 9092 roo DM_ROO 9092bp 1085..1167 134..216 127 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6908 178..361 121 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1510..1587 159..236 120 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2895 146..238 118 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1505..1591 135..219 115 60.9 Plus
roo 9092 roo DM_ROO 9092bp 1061..1142 134..215 113 59.8 Plus

BS07250.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:07 Download gff for BS07250.complete
Subject Subject Range Query Range Percent Splice Strand
daw-RA 1..1761 17..1777 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:50 Download gff for BS07250.complete
Subject Subject Range Query Range Percent Splice Strand
daw-RA 548..2308 17..1777 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:41 Download gff for BS07250.complete
Subject Subject Range Query Range Percent Splice Strand
daw-RB 673..2433 17..1777 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:07 Download gff for BS07250.complete
Subject Subject Range Query Range Percent Splice Strand
daw-RA 538..2309 7..1778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:27 Download gff for BS07250.complete
Subject Subject Range Query Range Percent Splice Strand
daw-RB 673..2433 17..1777 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:27 Download gff for BS07250.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2809311..2810253 17..959 100 -> Plus
2L 2810368..2810643 960..1235 100 -> Plus
2L 2811149..2811528 1236..1615 100 -> Plus
2L 2811598..2811759 1616..1777 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:41 Download gff for BS07250.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2809311..2810253 17..959 100 -> Plus
arm_2L 2810368..2810643 960..1235 100 -> Plus
arm_2L 2811149..2811528 1236..1615 100 -> Plus
arm_2L 2811598..2811759 1616..1777 100   Plus

BS07250.pep Sequence

Translation from 16 to 1776

> BS07250.pep
MAKYFIALVLLVCLALENRNVYNRLHARSHPSSRGDILRPHPKHQPHPHV
QHTSQQLQQQHHIRQQRSRQLKHLEPDPTSEEDDVPITKREYYARLRRHV
IHKRQHLLQQELSYNHPGSHSEQLKVPRLWQHLMEQEEKAHRHVSPPVEL
PIMYGDAPEESSLSSDDHFDDLSPLDFVRNELMAEDQQNQEKDLDLDLDL
DQQPETPIEPELPLGERNITISVKSSAGGCPKCESNRQVEHITEEQLTHL
RIEFVKQQILEKLRLKESPKVSAVELPKPIFDGMTLSHPDDSTKNKELDD
YYARTSKKFILLNREEVECNRARDGKSNPSMCFTFKIDDADAEGFDVSTA
VLWLFKNKQNRTDTASVNSTSAQQTIVVSEVEVDQQKDSKYLSAAKTIAI
QSVNVQDEWMKIDIEWPIKHWISGHELSHLIQITCGGCDVSDMEEIISVD
KDYRPFIVIDMQNRRRKSRQKRSINCSSGMTECCREHLYISFRDIGWSNW
ILKPEGYNAYFCRGSCSSVASVTQAASHHSSIMKILSTSGANKSLELVPC
CTAKQYSSLQLVVMDSSNTATVKTLPNMVVESCGCR*

BS07250.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
daw-PC 586 CG16987-PC 1..586 1..586 3093 100 Plus
daw-PA 586 CG16987-PA 1..586 1..586 3093 100 Plus
daw-PB 586 CG16987-PB 1..586 1..586 3093 100 Plus
Actbeta-PA 946 CG11062-PA 757..945 409..585 252 29.5 Plus
gbb-PB 455 CG5562-PB 64..454 255..585 219 20.8 Plus