Clone Sequence Records
BS07252.3prime Sequence
938 bp (860 high quality bases) assembled on 2006-01-06
> BS07252.3prime
ATGGTCTAGAAAGCTTTTACTGCTTTATTGTTTTGGGATCGCGATAGATG
CCCGTAAATAGGATCGACCTGGAAGTGCGGTCGTAGATGACGAACAGGAA
CGGATGGTTGCACTCAAACTTGGCCGGCTCCACGGGCCTGGCCGAGCGGT
AGGTGAAGAGGACTGTGGCCGCCGCCGCAGTGCTACCCTCCTCGTCCACC
TTGATCTTGGCCACGTGCTTGGAGTCACCGATGGAAATCGTCTCGGAGGT
CAGATCATCGAAGGTAGCGACAGACTCATCGAACATTTTGCTAACTCCCA
TTTTGGCAAGGATAGGATTAAGTTCCAGGCGCTGTTCAAACTCAAACTTG
GGCAGCGAAACTTCGATTTCGCGGGGCATTGCCTGCTTCAACGAATCATC
CAGACTGTCGGCATTCAACCGGGAGAGCACATCTTCGAGGGAATTACTGT
TAAATGGCGGCAAGATGAGCACCATGGAGATGTCCGAGTTCTCATCCGGC
GAGCTGTCCTCCTTCTCCTGAGACTCAAAGACGGTGCGATAGGGCAGCTG
AAGCACGTGGGCGCGGAGCTGTTCGTCGACATTCAGTAAGAAGGTGCCCT
TCTGTTGCATCATGGACACGAGAGAGTAGTTCGACGGAGACGTGTAGAAG
GGCATGGGCACCGTCTTCTCCGTCTTGAACTGACTGAGCCACTGACCCTT
CAGATAGGCGGCGTTGGCCAGGACCAAACGAGTGCGCGGAGTGATTTCAT
CGGCACTGAGCATATTGCGGATTTGATCGTGCGTCTGCTTGGCAATCCAA
TCGTTGATTTGCTTGCGCGACTCCTCCGTCTGGCTCTTGAAGTCGATCTG
CTGCACCTCCTCGGCCAGACGATTCCTTGCGCATTCGGTCACATGCAGAT
CATTGGCGAAGAATATGCGATCGGCTGAGGAGAACTCG
BS07252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18525-PA | 1284 | Spn5-RA | 363..1284 | 938..17 | 4610 | 100 | Minus |
CG18525-PB | 1284 | Spn5-RB | 363..1284 | 938..17 | 4610 | 100 | Minus |
CG6687-PA | 1281 | CG6687-RA | 568..621 | 727..674 | 145 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Ea-RB | 1518 | CG18525-RB | 473..1397 | 938..14 | 4625 | 100 | Minus |
Spn88Ea-RA | 1521 | CG18525-RA | 476..1400 | 938..14 | 4625 | 100 | Minus |
Spn88Eb-RA | 1431 | CG6687-RA | 572..723 | 814..663 | 295 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15203550..15204174 | 314..938 | 3125 | 100 | Plus |
3R | 32079331 | 3R | 15203190..15203489 | 14..313 | 1500 | 100 | Plus |
3R | 32079331 | 3R | 15207473..15207624 | 663..814 | 295 | 79.6 | Plus |
3R | 32079331 | 3R | 15206901..15206978 | 156..233 | 195 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:16:15 has no hits.
BS07252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:09 Download gff for
BS07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn5-PB | 363..1284 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:13 Download gff for
BS07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18525-PB | 363..1284 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:37 Download gff for
BS07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 476..1400 | 14..938 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:52:46 Download gff for
BS07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 476..1400 | 14..938 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:52:46 Download gff for
BS07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15203190..15203489 | 14..313 | 100 | <- | Plus |
3R | 15203550..15204174 | 314..938 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:37 Download gff for
BS07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11028912..11029211 | 14..313 | 100 | <- | Plus |
arm_3R | 11029272..11029896 | 314..938 | 100 | | Plus |
BS07252.5prime Sequence
892 bp (797 high quality bases) assembled on 2006-01-06
> BS07252.5prime
GAAGTTATCAGTCGACATGCACATCCTCAGCATATCTCTAATGGCGGTCC
TGCCGGCCATCGCCTTAGCCGGTCTCTGTGGGGTTGAGCCCGATGCGGGT
TTGTTGGATCAGCGGCTGAACCTCTATAAGGGCCAACAGAACTTTGCCGT
GTCCATGCTGAACGTGATTCGGCAGAGCACTCCCAATGAGAACGTCTTCT
TCTCGCCGTACAGCACGTATCATGCCCTGCTCCTCGCCTATTTCGGATCC
TCTGGTGACACGGAGAAGGAGTTGGCCAAGGTGCTGCATCTGGATTGGGC
CGACTCGAAGGAGGTGGTGCGCAGTGCCTATATTCTGGAGAAGATGAACC
GTAAGGAGCGGCAGAGCAAAATGCCTCTCGAGTTCTCCTCAGCCGATCGC
ATATTCTTCGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCT
GGCCGAGGAGGTGCAGCAGATCGACTTCAAGAGCCAGACGGAGGAGTCGC
GCAAGCAAATCAACGATTGGATTGCCAAGCAGACGCACGATCAAATCCGC
AATATGCTCAGTGCCGATGAAATCACTCCGCGCACTCGTTTGGTCCTGGC
CAACGCCGCCTATCTGAAGGGTCAGTGGCTCAGTCAGTTCAAGACGGAGA
AGACGGTGCCCATGCCCTTCTACACGTCTCCGTCGAACTACTCTCTCGTG
TCCATGATGCAACAGAAGGGCACCTTCTTACTGAATGTCGACGAACAGCT
CCGCGCCCACGTGCTTCAGCTGCCCTATCGCACCGTCTTTGAGTCTCAGG
AGAAGGAGGACAGCTCGCCGGATGAGAACTCGGACATCTCCATGGTGCTC
ATCTTGCCGCCATTTAACAGTAATTCCCTCGAAGATGTGCTC
BS07252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18525-PA | 1284 | Spn5-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
CG18525-PB | 1284 | Spn5-RB | 1..876 | 17..892 | 4380 | 100 | Plus |
CG6687-PA | 1281 | CG6687-RA | 568..621 | 590..643 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Ea-RB | 1518 | CG18525-RB | 110..986 | 16..892 | 4385 | 100 | Plus |
Spn88Ea-RA | 1521 | CG18525-RA | 113..989 | 16..892 | 4385 | 100 | Plus |
Spn88Eb-RA | 1431 | CG6687-RA | 572..723 | 503..654 | 295 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15203661..15204537 | 892..16 | 4385 | 100 | Minus |
3R | 32079331 | 3R | 15207473..15207624 | 654..503 | 295 | 79.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:36:47 has no hits.
BS07252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:10 Download gff for
BS07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn5-PB | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:15 Download gff for
BS07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18525-PB | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:16 Download gff for
BS07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 108..989 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:37 Download gff for
BS07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 108..989 | 9..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:37 Download gff for
BS07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15203661..15204540 | 9..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:16 Download gff for
BS07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11029383..11030262 | 9..892 | 99 | | Minus |
BS07252.complete Sequence
1316 bp (1316 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635788
> BS07252.complete
GAAGTTATCAGTCGACATGCACATCCTCAGCATATCTCTAATGGCGGTCC
TGCCGGCCATCGCCTTAGCCGGTCTCTGTGGGGTTGAGCCCGATGCGGGT
TTGTTGGATCAGCGGCTGAACCTCTATAAGGGCCAACAGAACTTTGCCGT
GTCCATGCTGAACGTGATTCGGCAGAGCACTCCCAATGAGAACGTCTTCT
TCTCGCCGTACAGCACGTATCATGCCCTGCTCCTCGCCTATTTCGGATCC
TCTGGTGACACGGAGAAGGAGTTGGCCAAGGTGCTGCATCTGGATTGGGC
CGACTCGAAGGAGGTGGTGCGCAGTGCCTATATTCTGGAGAAGATGAACC
GTAAGGAGCGGCAGAGCAAAATGCCTCTCGAGTTCTCCTCAGCCGATCGC
ATATTCTTCGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCT
GGCCGAGGAGGTGCAGCAGATCGACTTCAAGAGCCAGACGGAGGAGTCGC
GCAAGCAAATCAACGATTGGATTGCCAAGCAGACGCACGATCAAATCCGC
AATATGCTCAGTGCCGATGAAATCACTCCGCGCACTCGTTTGGTCCTGGC
CAACGCCGCCTATCTGAAGGGTCAGTGGCTCAGTCAGTTCAAGACGGAGA
AGACGGTGCCCATGCCCTTCTACACGTCTCCGTCGAACTACTCTCTCGTG
TCCATGATGCAACAGAAGGGCACCTTCTTACTGAATGTCGACGAACAGCT
CCGCGCCCACGTGCTTCAGCTGCCCTATCGCACCGTCTTTGAGTCTCAGG
AGAAGGAGGACAGCTCGCCGGATGAGAACTCGGACATCTCCATGGTGCTC
ATCTTGCCGCCATTTAACAGTAATTCCCTCGAAGATGTGCTCTCCCGGTT
GAATGCCGACAGTCTGGATGATTCGTTGAAGCAGGCAATGCCCCGCGAAA
TCGAAGTTTCGCTGCCCAAGTTTGAGTTTGAACAGCGCCTGGAACTTAAT
CCTATCCTTGCCAAAATGGGAGTTAGCAAAATGTTCGATGAGTCTGTCGC
TACCTTCGATGATCTGACCTCCGAGACGATTTCCATCGGTGACTCCAAGC
ACGTGGCCAAGATCAAGGTGGACGAGGAGGGTAGCACTGCGGCGGCGGCC
ACAGTCCTCTTCACCTACCGCTCGGCCAGGCCCGTGGAGCCGGCCAAGTT
TGAGTGCAACCATCCGTTCCTGTTCGTCATCTACGACCGCACTTCCAGGT
CGATCCTATTTACGGGCATCTATCGCGATCCCAAAACAATAAAGCAGTAA
AAGCTTTCTAGACCAT
BS07252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Ea-RB | 1284 | CG18525-PB | 1..1284 | 17..1300 | 6420 | 100 | Plus |
Spn88Ea-RA | 1284 | CG18525-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
Spn88Eb-RA | 1281 | CG6687-PA | 481..632 | 503..654 | 295 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Ea-RB | 1518 | CG18525-RB | 110..1397 | 16..1303 | 6440 | 100 | Plus |
Spn88Ea-RA | 1521 | CG18525-RA | 113..1400 | 16..1303 | 6440 | 100 | Plus |
Spn88Eb-RA | 1431 | CG6687-RA | 572..723 | 503..654 | 295 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15203550..15204537 | 1003..16 | 4940 | 100 | Minus |
3R | 32079331 | 3R | 15203190..15203489 | 1303..1004 | 1500 | 100 | Minus |
3R | 32079331 | 3R | 15207473..15207624 | 654..503 | 295 | 79.6 | Minus |
3R | 32079331 | 3R | 15206901..15206978 | 1161..1084 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:02:03 has no hits.
BS07252.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:53 Download gff for
BS07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn5-RB | 1..1284 | 17..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:03 Download gff for
BS07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn5-RB | 83..1375 | 9..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:46 Download gff for
BS07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 114..1395 | 17..1298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:53 Download gff for
BS07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn5-RB | 83..1375 | 9..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:47 Download gff for
BS07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 114..1395 | 17..1298 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:47 Download gff for
BS07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15203195..15203489 | 1004..1298 | 100 | <- | Minus |
3R | 15203550..15204536 | 17..1003 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:46 Download gff for
BS07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11028917..11029211 | 1004..1298 | 100 | <- | Minus |
arm_3R | 11029272..11030258 | 17..1003 | 100 | | Minus |
BS07252.pep Sequence
Translation from 16 to 1299
> BS07252.pep
MHILSISLMAVLPAIALAGLCGVEPDAGLLDQRLNLYKGQQNFAVSMLNV
IRQSTPNENVFFSPYSTYHALLLAYFGSSGDTEKELAKVLHLDWADSKEV
VRSAYILEKMNRKERQSKMPLEFSSADRIFFANDLHVTECARNRLAEEVQ
QIDFKSQTEESRKQINDWIAKQTHDQIRNMLSADEITPRTRLVLANAAYL
KGQWLSQFKTEKTVPMPFYTSPSNYSLVSMMQQKGTFLLNVDEQLRAHVL
QLPYRTVFESQEKEDSSPDENSDISMVLILPPFNSNSLEDVLSRLNADSL
DDSLKQAMPREIEVSLPKFEFEQRLELNPILAKMGVSKMFDESVATFDDL
TSETISIGDSKHVAKIKVDEEGSTAAAATVLFTYRSARPVEPAKFECNHP
FLFVIYDRTSRSILFTGIYRDPKTIKQ*
BS07252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Ea-PB | 427 | CG18525-PB | 1..427 | 1..427 | 2165 | 100 | Plus |
Spn88Ea-PA | 427 | CG18525-PA | 1..427 | 1..427 | 2165 | 100 | Plus |
Spn88Eb-PA | 426 | CG6687-PA | 1..425 | 1..426 | 1079 | 49.5 | Plus |
Spn55B-PA | 374 | CG10913-PA | 1..370 | 29..419 | 403 | 29.1 | Plus |
Spn43Aa-PA | 390 | CG12172-PA | 22..385 | 35..417 | 381 | 30.1 | Plus |