Clone BS07252 Report

Search the DGRC for BS07252

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptSpn88Ea-RA
Protein status:BS07252.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07252.3prime Sequence

938 bp (860 high quality bases) assembled on 2006-01-06

> BS07252.3prime
ATGGTCTAGAAAGCTTTTACTGCTTTATTGTTTTGGGATCGCGATAGATG
CCCGTAAATAGGATCGACCTGGAAGTGCGGTCGTAGATGACGAACAGGAA
CGGATGGTTGCACTCAAACTTGGCCGGCTCCACGGGCCTGGCCGAGCGGT
AGGTGAAGAGGACTGTGGCCGCCGCCGCAGTGCTACCCTCCTCGTCCACC
TTGATCTTGGCCACGTGCTTGGAGTCACCGATGGAAATCGTCTCGGAGGT
CAGATCATCGAAGGTAGCGACAGACTCATCGAACATTTTGCTAACTCCCA
TTTTGGCAAGGATAGGATTAAGTTCCAGGCGCTGTTCAAACTCAAACTTG
GGCAGCGAAACTTCGATTTCGCGGGGCATTGCCTGCTTCAACGAATCATC
CAGACTGTCGGCATTCAACCGGGAGAGCACATCTTCGAGGGAATTACTGT
TAAATGGCGGCAAGATGAGCACCATGGAGATGTCCGAGTTCTCATCCGGC
GAGCTGTCCTCCTTCTCCTGAGACTCAAAGACGGTGCGATAGGGCAGCTG
AAGCACGTGGGCGCGGAGCTGTTCGTCGACATTCAGTAAGAAGGTGCCCT
TCTGTTGCATCATGGACACGAGAGAGTAGTTCGACGGAGACGTGTAGAAG
GGCATGGGCACCGTCTTCTCCGTCTTGAACTGACTGAGCCACTGACCCTT
CAGATAGGCGGCGTTGGCCAGGACCAAACGAGTGCGCGGAGTGATTTCAT
CGGCACTGAGCATATTGCGGATTTGATCGTGCGTCTGCTTGGCAATCCAA
TCGTTGATTTGCTTGCGCGACTCCTCCGTCTGGCTCTTGAAGTCGATCTG
CTGCACCTCCTCGGCCAGACGATTCCTTGCGCATTCGGTCACATGCAGAT
CATTGGCGAAGAATATGCGATCGGCTGAGGAGAACTCG

BS07252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18525-PA 1284 Spn5-RA 363..1284 938..17 4610 100 Minus
CG18525-PB 1284 Spn5-RB 363..1284 938..17 4610 100 Minus
CG6687-PA 1281 CG6687-RA 568..621 727..674 145 90.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Ea-RB 1518 CG18525-RB 473..1397 938..14 4625 100 Minus
Spn88Ea-RA 1521 CG18525-RA 476..1400 938..14 4625 100 Minus
Spn88Eb-RA 1431 CG6687-RA 572..723 814..663 295 80.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15203550..15204174 314..938 3125 100 Plus
3R 32079331 3R 15203190..15203489 14..313 1500 100 Plus
3R 32079331 3R 15207473..15207624 663..814 295 79.6 Plus
3R 32079331 3R 15206901..15206978 156..233 195 83.3 Plus
Blast to na_te.dros performed on 2015-02-12 19:16:15 has no hits.

BS07252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:09 Download gff for BS07252.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn5-PB 363..1284 17..938 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:13 Download gff for BS07252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18525-PB 363..1284 17..938 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:37 Download gff for BS07252.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 476..1400 14..938 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:52:46 Download gff for BS07252.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 476..1400 14..938 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:52:46 Download gff for BS07252.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15203190..15203489 14..313 100 <- Plus
3R 15203550..15204174 314..938 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:37 Download gff for BS07252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11028912..11029211 14..313 100 <- Plus
arm_3R 11029272..11029896 314..938 100   Plus

BS07252.5prime Sequence

892 bp (797 high quality bases) assembled on 2006-01-06

> BS07252.5prime
GAAGTTATCAGTCGACATGCACATCCTCAGCATATCTCTAATGGCGGTCC
TGCCGGCCATCGCCTTAGCCGGTCTCTGTGGGGTTGAGCCCGATGCGGGT
TTGTTGGATCAGCGGCTGAACCTCTATAAGGGCCAACAGAACTTTGCCGT
GTCCATGCTGAACGTGATTCGGCAGAGCACTCCCAATGAGAACGTCTTCT
TCTCGCCGTACAGCACGTATCATGCCCTGCTCCTCGCCTATTTCGGATCC
TCTGGTGACACGGAGAAGGAGTTGGCCAAGGTGCTGCATCTGGATTGGGC
CGACTCGAAGGAGGTGGTGCGCAGTGCCTATATTCTGGAGAAGATGAACC
GTAAGGAGCGGCAGAGCAAAATGCCTCTCGAGTTCTCCTCAGCCGATCGC
ATATTCTTCGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCT
GGCCGAGGAGGTGCAGCAGATCGACTTCAAGAGCCAGACGGAGGAGTCGC
GCAAGCAAATCAACGATTGGATTGCCAAGCAGACGCACGATCAAATCCGC
AATATGCTCAGTGCCGATGAAATCACTCCGCGCACTCGTTTGGTCCTGGC
CAACGCCGCCTATCTGAAGGGTCAGTGGCTCAGTCAGTTCAAGACGGAGA
AGACGGTGCCCATGCCCTTCTACACGTCTCCGTCGAACTACTCTCTCGTG
TCCATGATGCAACAGAAGGGCACCTTCTTACTGAATGTCGACGAACAGCT
CCGCGCCCACGTGCTTCAGCTGCCCTATCGCACCGTCTTTGAGTCTCAGG
AGAAGGAGGACAGCTCGCCGGATGAGAACTCGGACATCTCCATGGTGCTC
ATCTTGCCGCCATTTAACAGTAATTCCCTCGAAGATGTGCTC

BS07252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18525-PA 1284 Spn5-RA 1..876 17..892 4380 100 Plus
CG18525-PB 1284 Spn5-RB 1..876 17..892 4380 100 Plus
CG6687-PA 1281 CG6687-RA 568..621 590..643 145 90.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Ea-RB 1518 CG18525-RB 110..986 16..892 4385 100 Plus
Spn88Ea-RA 1521 CG18525-RA 113..989 16..892 4385 100 Plus
Spn88Eb-RA 1431 CG6687-RA 572..723 503..654 295 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15203661..15204537 892..16 4385 100 Minus
3R 32079331 3R 15207473..15207624 654..503 295 79.6 Minus
Blast to na_te.dros performed on 2015-02-11 11:36:47 has no hits.

BS07252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:10 Download gff for BS07252.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn5-PB 1..876 17..892 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:15 Download gff for BS07252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18525-PB 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:16 Download gff for BS07252.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 108..989 9..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:37 Download gff for BS07252.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 108..989 9..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:37 Download gff for BS07252.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15203661..15204540 9..892 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:16 Download gff for BS07252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11029383..11030262 9..892 99   Minus

BS07252.complete Sequence

1316 bp (1316 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635788

> BS07252.complete
GAAGTTATCAGTCGACATGCACATCCTCAGCATATCTCTAATGGCGGTCC
TGCCGGCCATCGCCTTAGCCGGTCTCTGTGGGGTTGAGCCCGATGCGGGT
TTGTTGGATCAGCGGCTGAACCTCTATAAGGGCCAACAGAACTTTGCCGT
GTCCATGCTGAACGTGATTCGGCAGAGCACTCCCAATGAGAACGTCTTCT
TCTCGCCGTACAGCACGTATCATGCCCTGCTCCTCGCCTATTTCGGATCC
TCTGGTGACACGGAGAAGGAGTTGGCCAAGGTGCTGCATCTGGATTGGGC
CGACTCGAAGGAGGTGGTGCGCAGTGCCTATATTCTGGAGAAGATGAACC
GTAAGGAGCGGCAGAGCAAAATGCCTCTCGAGTTCTCCTCAGCCGATCGC
ATATTCTTCGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCT
GGCCGAGGAGGTGCAGCAGATCGACTTCAAGAGCCAGACGGAGGAGTCGC
GCAAGCAAATCAACGATTGGATTGCCAAGCAGACGCACGATCAAATCCGC
AATATGCTCAGTGCCGATGAAATCACTCCGCGCACTCGTTTGGTCCTGGC
CAACGCCGCCTATCTGAAGGGTCAGTGGCTCAGTCAGTTCAAGACGGAGA
AGACGGTGCCCATGCCCTTCTACACGTCTCCGTCGAACTACTCTCTCGTG
TCCATGATGCAACAGAAGGGCACCTTCTTACTGAATGTCGACGAACAGCT
CCGCGCCCACGTGCTTCAGCTGCCCTATCGCACCGTCTTTGAGTCTCAGG
AGAAGGAGGACAGCTCGCCGGATGAGAACTCGGACATCTCCATGGTGCTC
ATCTTGCCGCCATTTAACAGTAATTCCCTCGAAGATGTGCTCTCCCGGTT
GAATGCCGACAGTCTGGATGATTCGTTGAAGCAGGCAATGCCCCGCGAAA
TCGAAGTTTCGCTGCCCAAGTTTGAGTTTGAACAGCGCCTGGAACTTAAT
CCTATCCTTGCCAAAATGGGAGTTAGCAAAATGTTCGATGAGTCTGTCGC
TACCTTCGATGATCTGACCTCCGAGACGATTTCCATCGGTGACTCCAAGC
ACGTGGCCAAGATCAAGGTGGACGAGGAGGGTAGCACTGCGGCGGCGGCC
ACAGTCCTCTTCACCTACCGCTCGGCCAGGCCCGTGGAGCCGGCCAAGTT
TGAGTGCAACCATCCGTTCCTGTTCGTCATCTACGACCGCACTTCCAGGT
CGATCCTATTTACGGGCATCTATCGCGATCCCAAAACAATAAAGCAGTAA
AAGCTTTCTAGACCAT

BS07252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Ea-RB 1284 CG18525-PB 1..1284 17..1300 6420 100 Plus
Spn88Ea-RA 1284 CG18525-PA 1..1284 17..1300 6420 100 Plus
Spn88Eb-RA 1281 CG6687-PA 481..632 503..654 295 79.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Ea-RB 1518 CG18525-RB 110..1397 16..1303 6440 100 Plus
Spn88Ea-RA 1521 CG18525-RA 113..1400 16..1303 6440 100 Plus
Spn88Eb-RA 1431 CG6687-RA 572..723 503..654 295 79.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15203550..15204537 1003..16 4940 100 Minus
3R 32079331 3R 15203190..15203489 1303..1004 1500 100 Minus
3R 32079331 3R 15207473..15207624 654..503 295 79.6 Minus
3R 32079331 3R 15206901..15206978 1161..1084 195 83.3 Minus
Blast to na_te.dros performed on 2014-11-27 14:02:03 has no hits.

BS07252.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:53 Download gff for BS07252.complete
Subject Subject Range Query Range Percent Splice Strand
Spn5-RB 1..1284 17..1300 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:03 Download gff for BS07252.complete
Subject Subject Range Query Range Percent Splice Strand
Spn5-RB 83..1375 9..1303 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:46 Download gff for BS07252.complete
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 114..1395 17..1298 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:53 Download gff for BS07252.complete
Subject Subject Range Query Range Percent Splice Strand
Spn5-RB 83..1375 9..1303 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:47 Download gff for BS07252.complete
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 114..1395 17..1298 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:47 Download gff for BS07252.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15203195..15203489 1004..1298 100 <- Minus
3R 15203550..15204536 17..1003 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:46 Download gff for BS07252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11028917..11029211 1004..1298 100 <- Minus
arm_3R 11029272..11030258 17..1003 100   Minus

BS07252.pep Sequence

Translation from 16 to 1299

> BS07252.pep
MHILSISLMAVLPAIALAGLCGVEPDAGLLDQRLNLYKGQQNFAVSMLNV
IRQSTPNENVFFSPYSTYHALLLAYFGSSGDTEKELAKVLHLDWADSKEV
VRSAYILEKMNRKERQSKMPLEFSSADRIFFANDLHVTECARNRLAEEVQ
QIDFKSQTEESRKQINDWIAKQTHDQIRNMLSADEITPRTRLVLANAAYL
KGQWLSQFKTEKTVPMPFYTSPSNYSLVSMMQQKGTFLLNVDEQLRAHVL
QLPYRTVFESQEKEDSSPDENSDISMVLILPPFNSNSLEDVLSRLNADSL
DDSLKQAMPREIEVSLPKFEFEQRLELNPILAKMGVSKMFDESVATFDDL
TSETISIGDSKHVAKIKVDEEGSTAAAATVLFTYRSARPVEPAKFECNHP
FLFVIYDRTSRSILFTGIYRDPKTIKQ*

BS07252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Ea-PB 427 CG18525-PB 1..427 1..427 2165 100 Plus
Spn88Ea-PA 427 CG18525-PA 1..427 1..427 2165 100 Plus
Spn88Eb-PA 426 CG6687-PA 1..425 1..426 1079 49.5 Plus
Spn55B-PA 374 CG10913-PA 1..370 29..419 403 29.1 Plus
Spn43Aa-PA 390 CG12172-PA 22..385 35..417 381 30.1 Plus