Clone BS07253 Report

Search the DGRC for BS07253

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptVps24-RA
Protein status:BS07253.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07253.3prime Sequence

702 bp (701 high quality bases) assembled on 2006-01-06

> BS07253.3prime
ATGGTCTAGAAAGCTTTTAAGATCGCAGCGAGGCCAGGCGGCTTTGCATC
TCTTGCAGTTCCTCACCCTCCTCATCGTCCTGCTCAGCCTCGACGCGCGC
AGCAGACGCAGACGCCTTGTCCGCCGGTGTAGCCTCTGGAGGCAGGGGAG
CTTCCCCGAGCTTGCCATCTGTGATCTCCCACAAAACCTTGTCCACCTCC
TTGCTTGCCTCCTCCTCCAGCTCCTCGGACTCCTCCAGCGAGTCCATGGT
CTCGTCTAGCATCTCCTCAATAATGCCGGCCTTCATCATTTCCTTTGACA
TGTCGCGCATGATGCCTGCAAGCTCTGGATAGCGCACCAGGCTCTGCATA
GCTTGCAAGACCTCTGTAGACTTTTGCAGAGATCCAGCTACACGCAAGGT
GGATAGCTGATTTTTCATCTGCATCTGAATGGAGTTGAGGTGCGCCTTCG
ACGTATATATGCGGTTGATGGCCTTTCGCGCATTCACAATCTCCTTGGCA
AGAATGACGCAGGTGTCGCGGTCATTTTTCTGTGCTGCCTGTTTCAGCGA
GCGTTTTACTTTCTCTTCCTCGCGCTGGATACTTCGGATCTGGCGATCCA
GCTGGTTGCCCTCTTTCCGTATCTTATGCGTCCACTCCTGCACCTGCTCT
TTGGGATCTTTACTGGGAGTTCTGCCGAATAAGCCCATGTCGACTGATAA
CT

BS07253.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9779-PA 672 CG9779-RA 1..672 688..17 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Vps24-RA 1114 CG9779-RA 116..790 689..15 3375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4309971..4310358 15..402 1940 100 Plus
3R 32079331 3R 4310414..4310656 403..645 1215 100 Plus
3R 32079331 3R 4310785..4310832 642..689 240 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:39:12 has no hits.

BS07253.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:11 Download gff for BS07253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9779-PA 1..672 17..688 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:16 Download gff for BS07253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9779-PA 1..672 17..688 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:48 Download gff for BS07253.3prime
Subject Subject Range Query Range Percent Splice Strand
vps24-RA 107..795 8..702 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:25 Download gff for BS07253.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps24-RA 107..795 8..702 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:25 Download gff for BS07253.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4310414..4310654 403..643 100 <- Plus
3R 4310787..4310841 644..702 91   Plus
3R 4309966..4310358 8..402 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:48 Download gff for BS07253.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 135688..136080 8..402 98 <- Plus
arm_3R 136136..136376 403..643 100 <- Plus
arm_3R 136509..136563 644..702 91   Plus

BS07253.5prime Sequence

702 bp (701 high quality bases) assembled on 2006-01-06

> BS07253.5prime
GAAGTTATCAGTCGACATGGGCTTATTCGGCAGAACTCCCAGTAAAGATC
CCAAAGAGCAGGTGCAGGAGTGGACGCATAAGATACGGAAAGAGGGCAAC
CAGCTGGATCGCCAGATCCGAAGTATCCAGCGCGAGGAAGAGAAAGTAAA
ACGCTCGCTGAAACAGGCAGCACAGAAAAATGACCGCGACACCTGCGTCA
TTCTTGCCAAGGAGATTGTGAATGCGCGAAAGGCCATCAACCGCATATAT
ACGTCGAAGGCGCACCTCAACTCCATTCAGATGCAGATGAAAAATCAGCT
ATCCACCTTGCGTGTAGCTGGATCTCTGCAAAAGTCTACAGAGGTCTTGC
AAGCTATGCAGAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGC
GACATGTCAAAGGAAATGATGAAGGCCGGCATTATTGAGGAGATGCTAGA
CGAGACCATGGACTCGCTGGAGGAGTCCGAGGAGCTGGAGGAGGAGGCAA
GCAAGGAGGTGGACAAGGTTTTGTGGGAGATCACAGATGGCAAGCTCGGG
GAAGCTCCCCTGCCTCCAGAGGCTACACCGGCGGACAAGGCGTCTGCGTC
TGCTGCGCGCGTCGAGGCTGAGCAGGACGATGAGGAGGGTGAGGAACTGC
AAGAGATGCAAAGCCGCCTGGCCTCGCTGCGATCTTAAAAGCTTTCTAGA
CC

BS07253.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9779-PA 672 CG9779-RA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vps24-RA 1114 CG9779-RA 116..790 16..690 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4309971..4310358 690..303 1940 100 Minus
3R 32079331 3R 4310414..4310656 302..60 1215 100 Minus
3R 32079331 3R 4310785..4310832 63..16 240 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:09:56 has no hits.

BS07253.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:12 Download gff for BS07253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9779-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:17 Download gff for BS07253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9779-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:22:50 Download gff for BS07253.5prime
Subject Subject Range Query Range Percent Splice Strand
vps24-RA 107..795 3..697 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:13 Download gff for BS07253.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps24-RA 107..795 3..697 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:13 Download gff for BS07253.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4309966..4310358 303..697 98 <- Minus
3R 4310414..4310654 62..302 100 <- Minus
3R 4310787..4310841 3..61 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:22:50 Download gff for BS07253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 136136..136376 62..302 100 <- Minus
arm_3R 136509..136563 3..61 91   Minus
arm_3R 135688..136080 303..697 98 <- Minus

BS07253.complete Sequence

704 bp (704 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635789

> BS07253.complete
GAAGTTATCAGTCGACATGGGCTTATTCGGCAGAACTCCCAGTAAAGATC
CCAAAGAGCAGGTGCAGGAGTGGACGCATAAGATACGGAAAGAGGGCAAC
CAGCTGGATCGCCAGATCCGAAGTATCCAGCGCGAGGAAGAGAAAGTAAA
ACGCTCGCTGAAACAGGCAGCACAGAAAAATGACCGCGACACCTGCGTCA
TTCTTGCCAAGGAGATTGTGAATGCGCGAAAGGCCATCAACCGCATATAT
ACGTCGAAGGCGCACCTCAACTCCATTCAGATGCAGATGAAAAATCAGCT
ATCCACCTTGCGTGTAGCTGGATCTCTGCAAAAGTCTACAGAGGTCTTGC
AAGCTATGCAGAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGC
GACATGTCAAAGGAAATGATGAAGGCCGGCATTATTGAGGAGATGCTAGA
CGAGACCATGGACTCGCTGGAGGAGTCCGAGGAGCTGGAGGAGGAGGCAA
GCAAGGAGGTGGACAAGGTTTTGTGGGAGATCACAGATGGCAAGCTCGGG
GAAGCTCCCCTGCCTCCAGAGGCTACACCGGCGGACAAGGCGTCTGCGTC
TGCTGCGCGCGTCGAGGCTGAGCAGGACGATGAGGAGGGTGAGGAACTGC
AAGAGATGCAAAGCCGCCTGGCCTCGCTGCGATCTTAAAAGCTTTCTAGA
CCAT

BS07253.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Vps24-RA 672 CG9779-PA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Vps24-RA 1114 CG9779-RA 116..790 16..690 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4309971..4310358 690..303 1940 100 Minus
3R 32079331 3R 4310414..4310656 302..60 1215 100 Minus
3R 32079331 3R 4310785..4310832 63..16 240 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:00:37 has no hits.

BS07253.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:45 Download gff for BS07253.complete
Subject Subject Range Query Range Percent Splice Strand
CG9779-RA 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:05 Download gff for BS07253.complete
Subject Subject Range Query Range Percent Splice Strand
CG9779-RA 105..793 3..697 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:22 Download gff for BS07253.complete
Subject Subject Range Query Range Percent Splice Strand
vps24-RA 117..786 17..686 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:46 Download gff for BS07253.complete
Subject Subject Range Query Range Percent Splice Strand
CG9779-RA 105..793 3..697 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:19 Download gff for BS07253.complete
Subject Subject Range Query Range Percent Splice Strand
Vps24-RA 117..786 17..686 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:19 Download gff for BS07253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4309975..4310358 303..686 100 <- Minus
3R 4310414..4310654 62..302 100 <- Minus
3R 4310787..4310831 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:22 Download gff for BS07253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 136509..136553 17..61 100   Minus
arm_3R 135697..136080 303..686 100 <- Minus
arm_3R 136136..136376 62..302 100 <- Minus

BS07253.pep Sequence

Translation from 16 to 687

> BS07253.pep
MGLFGRTPSKDPKEQVQEWTHKIRKEGNQLDRQIRSIQREEEKVKRSLKQ
AAQKNDRDTCVILAKEIVNARKAINRIYTSKAHLNSIQMQMKNQLSTLRV
AGSLQKSTEVLQAMQSLVRYPELAGIMRDMSKEMMKAGIIEEMLDETMDS
LEESEELEEEASKEVDKVLWEITDGKLGEAPLPPEATPADKASASAARVE
AEQDDEEGEELQEMQSRLASLRS*

BS07253.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Vps24-PA 223 CG9779-PA 1..223 1..223 1103 100 Plus
CHMP2B-PA 212 CG4618-PA 5..205 3..206 227 28 Plus
Vps2-PA 256 CG14542-PA 4..183 3..181 195 25.8 Plus