Clone Sequence Records
BS07253.3prime Sequence
702 bp (701 high quality bases) assembled on 2006-01-06
> BS07253.3prime
ATGGTCTAGAAAGCTTTTAAGATCGCAGCGAGGCCAGGCGGCTTTGCATC
TCTTGCAGTTCCTCACCCTCCTCATCGTCCTGCTCAGCCTCGACGCGCGC
AGCAGACGCAGACGCCTTGTCCGCCGGTGTAGCCTCTGGAGGCAGGGGAG
CTTCCCCGAGCTTGCCATCTGTGATCTCCCACAAAACCTTGTCCACCTCC
TTGCTTGCCTCCTCCTCCAGCTCCTCGGACTCCTCCAGCGAGTCCATGGT
CTCGTCTAGCATCTCCTCAATAATGCCGGCCTTCATCATTTCCTTTGACA
TGTCGCGCATGATGCCTGCAAGCTCTGGATAGCGCACCAGGCTCTGCATA
GCTTGCAAGACCTCTGTAGACTTTTGCAGAGATCCAGCTACACGCAAGGT
GGATAGCTGATTTTTCATCTGCATCTGAATGGAGTTGAGGTGCGCCTTCG
ACGTATATATGCGGTTGATGGCCTTTCGCGCATTCACAATCTCCTTGGCA
AGAATGACGCAGGTGTCGCGGTCATTTTTCTGTGCTGCCTGTTTCAGCGA
GCGTTTTACTTTCTCTTCCTCGCGCTGGATACTTCGGATCTGGCGATCCA
GCTGGTTGCCCTCTTTCCGTATCTTATGCGTCCACTCCTGCACCTGCTCT
TTGGGATCTTTACTGGGAGTTCTGCCGAATAAGCCCATGTCGACTGATAA
CT
BS07253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9779-PA | 672 | CG9779-RA | 1..672 | 688..17 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps24-RA | 1114 | CG9779-RA | 116..790 | 689..15 | 3375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4309971..4310358 | 15..402 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 4310414..4310656 | 403..645 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 4310785..4310832 | 642..689 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:39:12 has no hits.
BS07253.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:11 Download gff for
BS07253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-PA | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:16 Download gff for
BS07253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-PA | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:48 Download gff for
BS07253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps24-RA | 107..795 | 8..702 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:25 Download gff for
BS07253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps24-RA | 107..795 | 8..702 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:25 Download gff for
BS07253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4310414..4310654 | 403..643 | 100 | <- | Plus |
3R | 4310787..4310841 | 644..702 | 91 | | Plus |
3R | 4309966..4310358 | 8..402 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:48 Download gff for
BS07253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 135688..136080 | 8..402 | 98 | <- | Plus |
arm_3R | 136136..136376 | 403..643 | 100 | <- | Plus |
arm_3R | 136509..136563 | 644..702 | 91 | | Plus |
BS07253.5prime Sequence
702 bp (701 high quality bases) assembled on 2006-01-06
> BS07253.5prime
GAAGTTATCAGTCGACATGGGCTTATTCGGCAGAACTCCCAGTAAAGATC
CCAAAGAGCAGGTGCAGGAGTGGACGCATAAGATACGGAAAGAGGGCAAC
CAGCTGGATCGCCAGATCCGAAGTATCCAGCGCGAGGAAGAGAAAGTAAA
ACGCTCGCTGAAACAGGCAGCACAGAAAAATGACCGCGACACCTGCGTCA
TTCTTGCCAAGGAGATTGTGAATGCGCGAAAGGCCATCAACCGCATATAT
ACGTCGAAGGCGCACCTCAACTCCATTCAGATGCAGATGAAAAATCAGCT
ATCCACCTTGCGTGTAGCTGGATCTCTGCAAAAGTCTACAGAGGTCTTGC
AAGCTATGCAGAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGC
GACATGTCAAAGGAAATGATGAAGGCCGGCATTATTGAGGAGATGCTAGA
CGAGACCATGGACTCGCTGGAGGAGTCCGAGGAGCTGGAGGAGGAGGCAA
GCAAGGAGGTGGACAAGGTTTTGTGGGAGATCACAGATGGCAAGCTCGGG
GAAGCTCCCCTGCCTCCAGAGGCTACACCGGCGGACAAGGCGTCTGCGTC
TGCTGCGCGCGTCGAGGCTGAGCAGGACGATGAGGAGGGTGAGGAACTGC
AAGAGATGCAAAGCCGCCTGGCCTCGCTGCGATCTTAAAAGCTTTCTAGA
CC
BS07253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9779-PA | 672 | CG9779-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps24-RA | 1114 | CG9779-RA | 116..790 | 16..690 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4309971..4310358 | 690..303 | 1940 | 100 | Minus |
3R | 32079331 | 3R | 4310414..4310656 | 302..60 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 4310785..4310832 | 63..16 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:09:56 has no hits.
BS07253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:12 Download gff for
BS07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:17 Download gff for
BS07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:22:50 Download gff for
BS07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps24-RA | 107..795 | 3..697 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:13 Download gff for
BS07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps24-RA | 107..795 | 3..697 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:13 Download gff for
BS07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4309966..4310358 | 303..697 | 98 | <- | Minus |
3R | 4310414..4310654 | 62..302 | 100 | <- | Minus |
3R | 4310787..4310841 | 3..61 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:22:50 Download gff for
BS07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 136136..136376 | 62..302 | 100 | <- | Minus |
arm_3R | 136509..136563 | 3..61 | 91 | | Minus |
arm_3R | 135688..136080 | 303..697 | 98 | <- | Minus |
BS07253.complete Sequence
704 bp (704 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635789
> BS07253.complete
GAAGTTATCAGTCGACATGGGCTTATTCGGCAGAACTCCCAGTAAAGATC
CCAAAGAGCAGGTGCAGGAGTGGACGCATAAGATACGGAAAGAGGGCAAC
CAGCTGGATCGCCAGATCCGAAGTATCCAGCGCGAGGAAGAGAAAGTAAA
ACGCTCGCTGAAACAGGCAGCACAGAAAAATGACCGCGACACCTGCGTCA
TTCTTGCCAAGGAGATTGTGAATGCGCGAAAGGCCATCAACCGCATATAT
ACGTCGAAGGCGCACCTCAACTCCATTCAGATGCAGATGAAAAATCAGCT
ATCCACCTTGCGTGTAGCTGGATCTCTGCAAAAGTCTACAGAGGTCTTGC
AAGCTATGCAGAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGC
GACATGTCAAAGGAAATGATGAAGGCCGGCATTATTGAGGAGATGCTAGA
CGAGACCATGGACTCGCTGGAGGAGTCCGAGGAGCTGGAGGAGGAGGCAA
GCAAGGAGGTGGACAAGGTTTTGTGGGAGATCACAGATGGCAAGCTCGGG
GAAGCTCCCCTGCCTCCAGAGGCTACACCGGCGGACAAGGCGTCTGCGTC
TGCTGCGCGCGTCGAGGCTGAGCAGGACGATGAGGAGGGTGAGGAACTGC
AAGAGATGCAAAGCCGCCTGGCCTCGCTGCGATCTTAAAAGCTTTCTAGA
CCAT
BS07253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps24-RA | 672 | CG9779-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps24-RA | 1114 | CG9779-RA | 116..790 | 16..690 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4309971..4310358 | 690..303 | 1940 | 100 | Minus |
3R | 32079331 | 3R | 4310414..4310656 | 302..60 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 4310785..4310832 | 63..16 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:37 has no hits.
BS07253.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:45 Download gff for
BS07253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-RA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:05 Download gff for
BS07253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-RA | 105..793 | 3..697 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:22 Download gff for
BS07253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps24-RA | 117..786 | 17..686 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:46 Download gff for
BS07253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-RA | 105..793 | 3..697 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:19 Download gff for
BS07253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps24-RA | 117..786 | 17..686 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:19 Download gff for
BS07253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4309975..4310358 | 303..686 | 100 | <- | Minus |
3R | 4310414..4310654 | 62..302 | 100 | <- | Minus |
3R | 4310787..4310831 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:22 Download gff for
BS07253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 136509..136553 | 17..61 | 100 | | Minus |
arm_3R | 135697..136080 | 303..686 | 100 | <- | Minus |
arm_3R | 136136..136376 | 62..302 | 100 | <- | Minus |
BS07253.pep Sequence
Translation from 16 to 687
> BS07253.pep
MGLFGRTPSKDPKEQVQEWTHKIRKEGNQLDRQIRSIQREEEKVKRSLKQ
AAQKNDRDTCVILAKEIVNARKAINRIYTSKAHLNSIQMQMKNQLSTLRV
AGSLQKSTEVLQAMQSLVRYPELAGIMRDMSKEMMKAGIIEEMLDETMDS
LEESEELEEEASKEVDKVLWEITDGKLGEAPLPPEATPADKASASAARVE
AEQDDEEGEELQEMQSRLASLRS*
BS07253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps24-PA | 223 | CG9779-PA | 1..223 | 1..223 | 1103 | 100 | Plus |
CHMP2B-PA | 212 | CG4618-PA | 5..205 | 3..206 | 227 | 28 | Plus |
Vps2-PA | 256 | CG14542-PA | 4..183 | 3..181 | 195 | 25.8 | Plus |