Clone Sequence Records
BS07261.3prime Sequence
474 bp (473 high quality bases) assembled on 2006-01-06
> BS07261.3prime
ATGGTCTAGAAAGCTTTCACATAGCATACTTTCTAGTCCACTCTCGTGCC
AGCTCATTGTATTTTTCCCGATCGGTTTTATATATTCTGGCAATCTCTGG
AACAAGAGGATCGTCTGGATTGGGATCACAGAGTAGAGAGCAAATTGATA
ATAAAACTTTTGAAATAGTTAATGCTGGCGACCACTGAGATCTTAATATA
TCGAGACAAATCGATCCATTGCTGTTGATGTTTGGATGGTATATGCGCGT
TGTAAAAGCCACTTTGGGTGGTTTAAAGGGATAGTCTGTTGGAAAATGTA
TAGTTAAGAAGAATACACCTCCTTGATAAGGGCTGTCCGGCGGGCCCATT
ATTGTAGCTTGCCAGTGAAATAAATCATCTCCAACTGGACCGGCTGAACA
TTGTGCAGGTGGATCTCTGCCCAGATCTTGCAGTTCCTTATTGATTCTTT
TTAACGCCATGTCGACTGATAACT
BS07261.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7425-PA | 444 | eff-RA | 1..444 | 460..17 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eff-RC | 1913 | CG7425-RC | 389..832 | 460..17 | 2220 | 100 | Minus |
eff-RB | 1622 | CG7425-RB | 389..832 | 460..17 | 2220 | 100 | Minus |
eff-RA | 2084 | CG7425-RA | 851..1294 | 460..17 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14733700..14733884 | 157..341 | 925 | 100 | Plus |
3R | 32079331 | 3R | 14733495..14733636 | 17..158 | 710 | 100 | Plus |
3R | 32079331 | 3R | 14737420..14737485 | 373..438 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:58:33 has no hits.
BS07261.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:28 Download gff for
BS07261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:40 Download gff for
BS07261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7425-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:08:37 Download gff for
BS07261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 843..1305 | 5..470 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:03 Download gff for
BS07261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 843..1305 | 5..470 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:03 Download gff for
BS07261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14733484..14733634 | 5..156 | 97 | <- | Plus |
3R | 14733700..14733883 | 157..340 | 100 | <- | Plus |
3R | 14734387..14734418 | 341..372 | 100 | <- | Plus |
3R | 14737420..14737483 | 373..436 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:08:37 Download gff for
BS07261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10559206..10559356 | 5..156 | 97 | <- | Plus |
arm_3R | 10559422..10559605 | 157..340 | 100 | <- | Plus |
arm_3R | 10560109..10560140 | 341..372 | 100 | <- | Plus |
arm_3R | 10563142..10563205 | 373..436 | 100 | <- | Plus |
BS07261.5prime Sequence
474 bp (473 high quality bases) assembled on 2006-01-06
> BS07261.5prime
GAAGTTATCAGTCGACATGGCGTTAAAAAGAATCAATAAGGAACTGCAAG
ATCTGGGCAGAGATCCACCTGCACAATGTTCAGCCGGTCCAGTTGGAGAT
GATTTATTTCACTGGCAAGCTACAATAATGGGCCCGCCGGACAGCCCTTA
TCAAGGAGGTGTATTCTTCTTAACTATACATTTTCCAACAGACTATCCCT
TTAAACCACCCAAAGTGGCTTTTACAACGCGCATATACCATCCAAACATC
AACAGCAATGGATCGATTTGTCTCGATATATTAAGATCTCAGTGGTCGCC
AGCATTAACTATTTCAAAAGTTTTATTATCAATTTGCTCTCTACTCTGTG
ATCCCAATCCAGACGATCCTCTTGTTCCAGAGATTGCCAGAATATATAAA
ACCGATCGGGAAAAATACAATGAGCTGGCACGAGAGTGGACTAGAAAGTA
TGCTATGTGAAAGCTTTCTAGACC
BS07261.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7425-PA | 444 | eff-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eff-RC | 1913 | CG7425-RC | 389..832 | 17..460 | 2220 | 100 | Plus |
eff-RB | 1622 | CG7425-RB | 389..832 | 17..460 | 2220 | 100 | Plus |
eff-RA | 2084 | CG7425-RA | 851..1294 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14733700..14733884 | 320..136 | 925 | 100 | Minus |
3R | 32079331 | 3R | 14733495..14733636 | 460..319 | 710 | 100 | Minus |
3R | 32079331 | 3R | 14737420..14737485 | 104..39 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:37:10 has no hits.
BS07261.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:29 Download gff for
BS07261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:42 Download gff for
BS07261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7425-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:07 Download gff for
BS07261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 843..1305 | 7..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:24:43 Download gff for
BS07261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 843..1305 | 7..472 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:24:43 Download gff for
BS07261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14733484..14733634 | 321..472 | 97 | <- | Minus |
3R | 14733700..14733883 | 137..320 | 100 | <- | Minus |
3R | 14734387..14734418 | 105..136 | 100 | <- | Minus |
3R | 14737420..14737483 | 41..104 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:07 Download gff for
BS07261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10559206..10559356 | 321..472 | 97 | <- | Minus |
arm_3R | 10559422..10559605 | 137..320 | 100 | <- | Minus |
arm_3R | 10560109..10560140 | 105..136 | 100 | <- | Minus |
arm_3R | 10563142..10563205 | 41..104 | 100 | <- | Minus |
BS07261.complete Sequence
476 bp (476 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635791
> BS07261.complete
GAAGTTATCAGTCGACATGGCGTTAAAAAGAATCAATAAGGAACTGCAAG
ATCTGGGCAGAGATCCACCTGCACAATGTTCAGCCGGTCCAGTTGGAGAT
GATTTATTTCACTGGCAAGCTACAATAATGGGCCCGCCGGACAGCCCTTA
TCAAGGAGGTGTATTCTTCTTAACTATACATTTTCCAACAGACTATCCCT
TTAAACCACCCAAAGTGGCTTTTACAACGCGCATATACCATCCAAACATC
AACAGCAATGGATCGATTTGTCTCGATATATTAAGATCTCAGTGGTCGCC
AGCATTAACTATTTCAAAAGTTTTATTATCAATTTGCTCTCTACTCTGTG
ATCCCAATCCAGACGATCCTCTTGTTCCAGAGATTGCCAGAATATATAAA
ACCGATCGGGAAAAATACAATGAGCTGGCACGAGAGTGGACTAGAAAGTA
TGCTATGTGAAAGCTTTCTAGACCAT
BS07261.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eff-RC | 444 | CG7425-PC | 1..444 | 17..460 | 2220 | 100 | Plus |
eff-RB | 444 | CG7425-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
eff-RA | 444 | CG7425-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eff-RC | 1913 | CG7425-RC | 389..832 | 17..460 | 2220 | 100 | Plus |
eff-RB | 1622 | CG7425-RB | 389..832 | 17..460 | 2220 | 100 | Plus |
eff-RA | 2084 | CG7425-RA | 851..1294 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14733700..14733884 | 320..136 | 925 | 100 | Minus |
3R | 32079331 | 3R | 14733495..14733636 | 460..319 | 710 | 100 | Minus |
3R | 32079331 | 3R | 14737420..14737485 | 104..39 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:22:47 has no hits.
BS07261.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:48 Download gff for
BS07261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:09 Download gff for
BS07261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 735..1197 | 7..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:02 Download gff for
BS07261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 851..1293 | 17..459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:48 Download gff for
BS07261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 735..1197 | 7..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:30 Download gff for
BS07261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 851..1293 | 17..459 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:30 Download gff for
BS07261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14733496..14733634 | 321..459 | 100 | <- | Minus |
3R | 14733700..14733883 | 137..320 | 100 | <- | Minus |
3R | 14734387..14734418 | 105..136 | 100 | <- | Minus |
3R | 14737420..14737483 | 41..104 | 100 | <- | Minus |
3R | 14740380..14740403 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:02 Download gff for
BS07261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10559218..10559356 | 321..459 | 100 | <- | Minus |
arm_3R | 10559422..10559605 | 137..320 | 100 | <- | Minus |
arm_3R | 10560109..10560140 | 105..136 | 100 | <- | Minus |
arm_3R | 10563142..10563205 | 41..104 | 100 | <- | Minus |
arm_3R | 10566102..10566125 | 17..40 | 100 | | Minus |
BS07261.pep Sequence
Translation from 16 to 459
> BS07261.pep
MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVF
FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTIS
KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM*
BS07261.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eff-PC | 147 | CG7425-PC | 1..147 | 1..147 | 804 | 100 | Plus |
eff-PB | 147 | CG7425-PB | 1..147 | 1..147 | 804 | 100 | Plus |
eff-PA | 147 | CG7425-PA | 1..147 | 1..147 | 804 | 100 | Plus |
Ubc2-PD | 232 | CG6720-PD | 89..231 | 4..146 | 513 | 66.4 | Plus |
Ubc2-PC | 232 | CG6720-PC | 89..231 | 4..146 | 513 | 66.4 | Plus |