Clone Sequence Records
BS07262.3prime Sequence
606 bp (605 high quality bases) assembled on 2006-01-06
> BS07262.3prime
ATGGTCTAGAAAGCTTTTAGTTGCGGATGAGAACCACTCGGGGATCGGAG
GCCACGCTCCACAGAAGTGGTGGCTGCTGGCGAATCACCTGGGTGGTGCG
AACAGCGGGTGCCACAATGGGTGTGACCAATCGGCGGTGATCGTGCACCA
CCGTCTGGGTCTGATGCGAAACGGCAGTGGGCACGTGCTGCACCACCTCG
CCCACCTTGGCCACGGCTGGCTCCTGGATGGTCAATACGGTTCGTAGTCC
ATTACGAGCGGCCAGGATCAGAGGAAGAGGCACAGAGACGGGAATTCCGG
CAGAGACAAGACGGCCACTAATCGGATCGGCACTGCCACTGGATGCGGAG
GAGACCTGTTGCTCTTCCGCCTCCTCCTGGGATTGATCTTCCGGCTGGGC
AGCGGATGAGCTGACGGACCCCGAACTGCCATCGGCCAACTCAACGGAAT
CCTCGCTGGCAATCGGAAGCAGCTGCGAGGACTTGACCGAACTGAGAGCC
ACAAGATTCGAGGGCCACTCCAAGCTGGCTGTATGCGAAGCTCCGATGGA
GACCAGCACAATGGCCAAGACGGGCAGGAACAATCTAGACATGTCGACTG
ATAACT
BS07262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13057-PA | 576 | retinin-RA | 1..576 | 592..17 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
retinin-RA | 798 | CG13057-RA | 47..623 | 593..17 | 2885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16332050..16332614 | 581..17 | 2825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:57:13 has no hits.
BS07262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:31 Download gff for
BS07262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13057-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:43 Download gff for
BS07262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13057-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:31 Download gff for
BS07262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinin-RA | 47..623 | 17..593 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:08 Download gff for
BS07262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinin-RA | 47..623 | 17..593 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:08 Download gff for
BS07262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16332051..16332614 | 17..580 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:31 Download gff for
BS07262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16325151..16325714 | 17..580 | 100 | | Minus |
BS07262.5prime Sequence
606 bp (605 high quality bases) assembled on 2006-01-06
> BS07262.5prime
GAAGTTATCAGTCGACATGTCTAGATTGTTCCTGCCCGTCTTGGCCATTG
TGCTGGTCTCCATCGGAGCTTCGCATACAGCCAGCTTGGAGTGGCCCTCG
AATCTTGTGGCTCTCAGTTCGGTCAAGTCCTCGCAGCTGCTTCCGATTGC
CAGCGAGGATTCCGTTGAGTTGGCCGATGGCAGTTCGGGGTCCGTCAGCT
CATCCGCTGCCCAGCCGGAAGATCAATCCCAGGAGGAGGCGGAAGAGCAA
CAGGTCTCCTCCGCATCCAGTGGCAGTGCCGATCCGATTAGTGGCCGTCT
TGTCTCTGCCGGAATTCCCGTCTCTGTGCCTCTTCCTCTGATCCTGGCCG
CTCGTAATGGACTACGAACCGTATTGACCATCCAGGAGCCAGCCGTGGCC
AAGGTGGGCGAGGTGGTGCAGCACGTGCCCACTGCCGTTTCGCATCAGAC
CCAGACGGTGGTGCACGATCACCGCCGATTGGTCACACCCATTGTGGCAC
CCGCTGTTCGCACCACCCAGGTGATTCGCCAGCAGCCACCACTTCTGTGG
AGCGTGGCCTCCGATCCCCGAGTGGTTCTCATCCGCAACTAAAAGCTTTC
TAGACC
BS07262.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13057-PA | 576 | retinin-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
retinin-RA | 798 | CG13057-RA | 47..623 | 16..592 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16332050..16332614 | 28..592 | 2825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:32:42 has no hits.
BS07262.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:32 Download gff for
BS07262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13057-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:45 Download gff for
BS07262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13057-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:47 Download gff for
BS07262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinin-RA | 47..623 | 16..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:58 Download gff for
BS07262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinin-RA | 47..623 | 16..592 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:58 Download gff for
BS07262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16332051..16332614 | 29..592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:47 Download gff for
BS07262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16325151..16325714 | 29..592 | 100 | | Plus |
BS07262.complete Sequence
608 bp (608 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635792
> BS07262.complete
GAAGTTATCAGTCGACATGTCTAGATTGTTCCTGCCCGTCTTGGCCATTG
TGCTGGTCTCCATCGGAGCTTCGCATACAGCCAGCTTGGAGTGGCCCTCG
AATCTTGTGGCTCTCAGTTCGGTCAAGTCCTCGCAGCTGCTTCCGATTGC
CAGCGAGGATTCCGTTGAGTTGGCCGATGGCAGTTCGGGGTCCGTCAGCT
CATCCGCTGCCCAGCCGGAAGATCAATCCCAGGAGGAGGCGGAAGAGCAA
CAGGTCTCCTCCGCATCCAGTGGCAGTGCCGATCCGATTAGTGGCCGTCT
TGTCTCTGCCGGAATTCCCGTCTCTGTGCCTCTTCCTCTGATCCTGGCCG
CTCGTAATGGACTACGAACCGTATTGACCATCCAGGAGCCAGCCGTGGCC
AAGGTGGGCGAGGTGGTGCAGCACGTGCCCACTGCCGTTTCGCATCAGAC
CCAGACGGTGGTGCACGATCACCGCCGATTGGTCACACCCATTGTGGCAC
CCGCTGTTCGCACCACCCAGGTGATTCGCCAGCAGCCACCACTTCTGTGG
AGCGTGGCCTCCGATCCCCGAGTGGTTCTCATCCGCAACTAAAAGCTTTC
TAGACCAT
BS07262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
retinin-RA | 576 | CG13057-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
retinin-RA | 798 | CG13057-RA | 47..623 | 16..592 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16332050..16332614 | 28..592 | 2825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:26:40 has no hits.
BS07262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:51 Download gff for
BS07262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinin-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:10 Download gff for
BS07262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinin-RA | 61..637 | 16..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:48 Download gff for
BS07262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinin-RA | 48..621 | 17..590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:51 Download gff for
BS07262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinin-RA | 61..637 | 16..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:30 Download gff for
BS07262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinin-RA | 48..621 | 17..590 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:30 Download gff for
BS07262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16332050..16332612 | 28..590 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:48 Download gff for
BS07262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16325150..16325712 | 28..590 | 100 | | Plus |
BS07262.pep Sequence
Translation from 16 to 591
> BS07262.pep
MSRLFLPVLAIVLVSIGASHTASLEWPSNLVALSSVKSSQLLPIASEDSV
ELADGSSGSVSSSAAQPEDQSQEEAEEQQVSSASSGSADPISGRLVSAGI
PVSVPLPLILAARNGLRTVLTIQEPAVAKVGEVVQHVPTAVSHQTQTVVH
DHRRLVTPIVAPAVRTTQVIRQQPPLLWSVASDPRVVLIRN*
BS07262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
retinin-PA | 191 | CG13057-PA | 1..191 | 1..191 | 924 | 100 | Plus |
CG13043-PA | 148 | CG13043-PA | 26..86 | 107..170 | 159 | 51.6 | Plus |
CG13063-PA | 129 | CG13063-PA | 25..85 | 107..170 | 149 | 48.4 | Plus |