Clone BS07262 Report

Search the DGRC for BS07262

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptretinin-RA
Protein status:BS07262.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07262.3prime Sequence

606 bp (605 high quality bases) assembled on 2006-01-06

> BS07262.3prime
ATGGTCTAGAAAGCTTTTAGTTGCGGATGAGAACCACTCGGGGATCGGAG
GCCACGCTCCACAGAAGTGGTGGCTGCTGGCGAATCACCTGGGTGGTGCG
AACAGCGGGTGCCACAATGGGTGTGACCAATCGGCGGTGATCGTGCACCA
CCGTCTGGGTCTGATGCGAAACGGCAGTGGGCACGTGCTGCACCACCTCG
CCCACCTTGGCCACGGCTGGCTCCTGGATGGTCAATACGGTTCGTAGTCC
ATTACGAGCGGCCAGGATCAGAGGAAGAGGCACAGAGACGGGAATTCCGG
CAGAGACAAGACGGCCACTAATCGGATCGGCACTGCCACTGGATGCGGAG
GAGACCTGTTGCTCTTCCGCCTCCTCCTGGGATTGATCTTCCGGCTGGGC
AGCGGATGAGCTGACGGACCCCGAACTGCCATCGGCCAACTCAACGGAAT
CCTCGCTGGCAATCGGAAGCAGCTGCGAGGACTTGACCGAACTGAGAGCC
ACAAGATTCGAGGGCCACTCCAAGCTGGCTGTATGCGAAGCTCCGATGGA
GACCAGCACAATGGCCAAGACGGGCAGGAACAATCTAGACATGTCGACTG
ATAACT

BS07262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13057-PA 576 retinin-RA 1..576 592..17 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
retinin-RA 798 CG13057-RA 47..623 593..17 2885 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16332050..16332614 581..17 2825 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:57:13 has no hits.

BS07262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:31 Download gff for BS07262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13057-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:43 Download gff for BS07262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13057-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:31 Download gff for BS07262.3prime
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 47..623 17..593 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:08 Download gff for BS07262.3prime
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 47..623 17..593 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:08 Download gff for BS07262.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16332051..16332614 17..580 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:31 Download gff for BS07262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16325151..16325714 17..580 100   Minus

BS07262.5prime Sequence

606 bp (605 high quality bases) assembled on 2006-01-06

> BS07262.5prime
GAAGTTATCAGTCGACATGTCTAGATTGTTCCTGCCCGTCTTGGCCATTG
TGCTGGTCTCCATCGGAGCTTCGCATACAGCCAGCTTGGAGTGGCCCTCG
AATCTTGTGGCTCTCAGTTCGGTCAAGTCCTCGCAGCTGCTTCCGATTGC
CAGCGAGGATTCCGTTGAGTTGGCCGATGGCAGTTCGGGGTCCGTCAGCT
CATCCGCTGCCCAGCCGGAAGATCAATCCCAGGAGGAGGCGGAAGAGCAA
CAGGTCTCCTCCGCATCCAGTGGCAGTGCCGATCCGATTAGTGGCCGTCT
TGTCTCTGCCGGAATTCCCGTCTCTGTGCCTCTTCCTCTGATCCTGGCCG
CTCGTAATGGACTACGAACCGTATTGACCATCCAGGAGCCAGCCGTGGCC
AAGGTGGGCGAGGTGGTGCAGCACGTGCCCACTGCCGTTTCGCATCAGAC
CCAGACGGTGGTGCACGATCACCGCCGATTGGTCACACCCATTGTGGCAC
CCGCTGTTCGCACCACCCAGGTGATTCGCCAGCAGCCACCACTTCTGTGG
AGCGTGGCCTCCGATCCCCGAGTGGTTCTCATCCGCAACTAAAAGCTTTC
TAGACC

BS07262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13057-PA 576 retinin-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
retinin-RA 798 CG13057-RA 47..623 16..592 2885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16332050..16332614 28..592 2825 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:32:42 has no hits.

BS07262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:32 Download gff for BS07262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13057-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:45 Download gff for BS07262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13057-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:47 Download gff for BS07262.5prime
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 47..623 16..592 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:58 Download gff for BS07262.5prime
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 47..623 16..592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:58 Download gff for BS07262.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16332051..16332614 29..592 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:47 Download gff for BS07262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16325151..16325714 29..592 100   Plus

BS07262.complete Sequence

608 bp (608 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635792

> BS07262.complete
GAAGTTATCAGTCGACATGTCTAGATTGTTCCTGCCCGTCTTGGCCATTG
TGCTGGTCTCCATCGGAGCTTCGCATACAGCCAGCTTGGAGTGGCCCTCG
AATCTTGTGGCTCTCAGTTCGGTCAAGTCCTCGCAGCTGCTTCCGATTGC
CAGCGAGGATTCCGTTGAGTTGGCCGATGGCAGTTCGGGGTCCGTCAGCT
CATCCGCTGCCCAGCCGGAAGATCAATCCCAGGAGGAGGCGGAAGAGCAA
CAGGTCTCCTCCGCATCCAGTGGCAGTGCCGATCCGATTAGTGGCCGTCT
TGTCTCTGCCGGAATTCCCGTCTCTGTGCCTCTTCCTCTGATCCTGGCCG
CTCGTAATGGACTACGAACCGTATTGACCATCCAGGAGCCAGCCGTGGCC
AAGGTGGGCGAGGTGGTGCAGCACGTGCCCACTGCCGTTTCGCATCAGAC
CCAGACGGTGGTGCACGATCACCGCCGATTGGTCACACCCATTGTGGCAC
CCGCTGTTCGCACCACCCAGGTGATTCGCCAGCAGCCACCACTTCTGTGG
AGCGTGGCCTCCGATCCCCGAGTGGTTCTCATCCGCAACTAAAAGCTTTC
TAGACCAT

BS07262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
retinin-RA 576 CG13057-PA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
retinin-RA 798 CG13057-RA 47..623 16..592 2885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16332050..16332614 28..592 2825 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:26:40 has no hits.

BS07262.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:51 Download gff for BS07262.complete
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:10 Download gff for BS07262.complete
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 61..637 16..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:48 Download gff for BS07262.complete
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 48..621 17..590 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:51 Download gff for BS07262.complete
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 61..637 16..592 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:30 Download gff for BS07262.complete
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 48..621 17..590 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:30 Download gff for BS07262.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16332050..16332612 28..590 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:48 Download gff for BS07262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16325150..16325712 28..590 100   Plus

BS07262.pep Sequence

Translation from 16 to 591

> BS07262.pep
MSRLFLPVLAIVLVSIGASHTASLEWPSNLVALSSVKSSQLLPIASEDSV
ELADGSSGSVSSSAAQPEDQSQEEAEEQQVSSASSGSADPISGRLVSAGI
PVSVPLPLILAARNGLRTVLTIQEPAVAKVGEVVQHVPTAVSHQTQTVVH
DHRRLVTPIVAPAVRTTQVIRQQPPLLWSVASDPRVVLIRN*

BS07262.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
retinin-PA 191 CG13057-PA 1..191 1..191 924 100 Plus
CG13043-PA 148 CG13043-PA 26..86 107..170 159 51.6 Plus
CG13063-PA 129 CG13063-PA 25..85 107..170 149 48.4 Plus