Clone Sequence Records
BS07265.3prime Sequence
684 bp (683 high quality bases) assembled on 2006-01-06
> BS07265.3prime
ATGGTCTAGAAAGCTTCTAATAGTTATATCGTCTCCGCCGGTTGGTGTAG
TGAATGGCCAAGATGATGGCCAGCAATAGAATGACAGCGTTGAATCCGAG
CAGACCCCACTCCAAATAGCCCAGAGTGGTTGCCTCATCTGCAAAAGCCT
CCTCCACTTTGATGAGGCAGCCGCGCACATATAGATTCAGTGGATTCACA
CAGCTGTCGTCCTTGCAACAGCTACTTGGAACGGTATTGTTCCAGAATTT
GATATCCAAGTAGTCTTGGGCACTGTCGCGGCCACAGCAATAGTACGTTT
TCTGAATAATATCCATACTGCCAGGCTTCGTCTGCTCCAGCTCCCACTGA
TTCTCCACCGTTTGAAGCGCGTACTTTTTAAATACATCTTTGGGATTCAG
GATGATAAACGCCACTATAAGTAGCAGCAAAATCAGCAGCAGTGACGCAT
ACGTCCAGAGCATGCGCGGCGATTCGCGAACGGCTCCACAGCATCCAAAC
AGGGATATTACCAGGATAGTACCGCCCAGAATTAAGATGCCGATGGCATA
TGCATCTGGCATTGCTCCCCAGCCAAGGCCGCCAAAGATGAGCACCAGGA
TACCGAGTATCGCCCATAAGGCATTGAACAGGAACAGCGAGTACTTTATG
GTGCCCGTTGCGCAACCCATGTCGACTGATAACT
BS07265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12840-PA | 654 | Tsp42El-RA | 1..654 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42El-RA | 1062 | CG12840-RA | 181..839 | 675..17 | 3280 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7047972..7048180 | 296..88 | 1045 | 100 | Minus |
2R | 25286936 | 2R | 7047276..7047435 | 611..452 | 800 | 100 | Minus |
2R | 25286936 | 2R | 7047500..7047656 | 452..296 | 785 | 100 | Minus |
2R | 25286936 | 2R | 7048244..7048315 | 88..17 | 360 | 100 | Minus |
2R | 25286936 | 2R | 7045949..7046013 | 675..611 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:36:53 has no hits.
BS07265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:37 Download gff for
BS07265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12840-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:53 Download gff for
BS07265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12840-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:30:32 Download gff for
BS07265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 178..848 | 10..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:22 Download gff for
BS07265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 178..848 | 10..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:22 Download gff for
BS07265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7045946..7046013 | 611..678 | 97 | -> | Minus |
2R | 7047277..7047435 | 452..610 | 100 | -> | Minus |
2R | 7047501..7047656 | 296..451 | 100 | -> | Minus |
2R | 7047973..7048179 | 89..295 | 100 | -> | Minus |
2R | 7048244..7048324 | 10..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:30:32 Download gff for
BS07265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2933451..2933518 | 611..678 | 97 | -> | Minus |
arm_2R | 2934782..2934940 | 452..610 | 100 | -> | Minus |
arm_2R | 2935006..2935161 | 296..451 | 100 | -> | Minus |
arm_2R | 2935478..2935684 | 89..295 | 100 | -> | Minus |
arm_2R | 2935749..2935829 | 10..88 | 95 | | Minus |
BS07265.5prime Sequence
684 bp (683 high quality bases) assembled on 2006-01-06
> BS07265.5prime
GAAGTTATCAGTCGACATGGGTTGCGCAACGGGCACCATAAAGTACTCGC
TGTTCCTGTTCAATGCCTTATGGGCGATACTCGGTATCCTGGTGCTCATC
TTTGGCGGCCTTGGCTGGGGAGCAATGCCAGATGCATATGCCATCGGCAT
CTTAATTCTGGGCGGTACTATCCTGGTAATATCCCTGTTTGGATGCTGTG
GAGCCGTTCGCGAATCGCCGCGCATGCTCTGGACGTATGCGTCACTGCTG
CTGATTTTGCTGCTACTTATAGTGGCGTTTATCATCCTGAATCCCAAAGA
TGTATTTAAAAAGTACGCGCTTCAAACGGTGGAGAATCAGTGGGAGCTGG
AGCAGACGAAGCCTGGCAGTATGGATATTATTCAGAAAACGTACTATTGC
TGTGGCCGCGACAGTGCCCAAGACTACTTGGATATCAAATTCTGGAACAA
TACCGTTCCAAGTAGCTGTTGCAAGGACGACAGCTGTGTGAATCCACTGA
ATCTATATGTGCGCGGCTGCCTCATCAAAGTGGAGGAGGCTTTTGCAGAT
GAGGCAACCACTCTGGGCTATTTGGAGTGGGGTCTGCTCGGATTCAACGC
TGTCATTCTATTGCTGGCCATCATCTTGGCCATTCACTACACCAACCGGC
GGAGACGATATAACTATTAGAAGCTTTCTAGACC
BS07265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12840-PA | 654 | Tsp42El-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42El-RA | 1062 | CG12840-RA | 181..839 | 12..670 | 3280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7047972..7048180 | 391..599 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 7047276..7047435 | 76..235 | 800 | 100 | Plus |
2R | 25286936 | 2R | 7047500..7047656 | 235..391 | 785 | 100 | Plus |
2R | 25286936 | 2R | 7048244..7048315 | 599..670 | 360 | 100 | Plus |
2R | 25286936 | 2R | 7045949..7046013 | 12..76 | 310 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:26:49 has no hits.
BS07265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:38 Download gff for
BS07265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12840-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:55 Download gff for
BS07265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12840-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:24:29 Download gff for
BS07265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 178..848 | 9..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:59 Download gff for
BS07265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 178..848 | 9..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:59 Download gff for
BS07265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7047501..7047656 | 236..391 | 100 | -> | Plus |
2R | 7047973..7048179 | 392..598 | 100 | -> | Plus |
2R | 7048244..7048324 | 599..677 | 95 | | Plus |
2R | 7045946..7046013 | 9..76 | 97 | -> | Plus |
2R | 7047277..7047435 | 77..235 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:24:29 Download gff for
BS07265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2933451..2933518 | 9..76 | 97 | -> | Plus |
arm_2R | 2934782..2934940 | 77..235 | 100 | -> | Plus |
arm_2R | 2935006..2935161 | 236..391 | 100 | -> | Plus |
arm_2R | 2935478..2935684 | 392..598 | 100 | -> | Plus |
arm_2R | 2935749..2935829 | 599..677 | 95 | | Plus |
BS07265.complete Sequence
686 bp (686 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635793
> BS07265.complete
GAAGTTATCAGTCGACATGGGTTGCGCAACGGGCACCATAAAGTACTCGC
TGTTCCTGTTCAATGCCTTATGGGCGATACTCGGTATCCTGGTGCTCATC
TTTGGCGGCCTTGGCTGGGGAGCAATGCCAGATGCATATGCCATCGGCAT
CTTAATTCTGGGCGGTACTATCCTGGTAATATCCCTGTTTGGATGCTGTG
GAGCCGTTCGCGAATCGCCGCGCATGCTCTGGACGTATGCGTCACTGCTG
CTGATTTTGCTGCTACTTATAGTGGCGTTTATCATCCTGAATCCCAAAGA
TGTATTTAAAAAGTACGCGCTTCAAACGGTGGAGAATCAGTGGGAGCTGG
AGCAGACGAAGCCTGGCAGTATGGATATTATTCAGAAAACGTACTATTGC
TGTGGCCGCGACAGTGCCCAAGACTACTTGGATATCAAATTCTGGAACAA
TACCGTTCCAAGTAGCTGTTGCAAGGACGACAGCTGTGTGAATCCACTGA
ATCTATATGTGCGCGGCTGCCTCATCAAAGTGGAGGAGGCTTTTGCAGAT
GAGGCAACCACTCTGGGCTATTTGGAGTGGGGTCTGCTCGGATTCAACGC
TGTCATTCTATTGCTGGCCATCATCTTGGCCATTCACTACACCAACCGGC
GGAGACGATATAACTATTAGAAGCTTTCTAGACCAT
BS07265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42El-RA | 654 | CG12840-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42El-RA | 1062 | CG12840-RA | 181..839 | 12..670 | 3280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7047972..7048180 | 391..599 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 7047276..7047435 | 76..235 | 800 | 100 | Plus |
2R | 25286936 | 2R | 7047500..7047656 | 235..391 | 785 | 100 | Plus |
2R | 25286936 | 2R | 7048244..7048315 | 599..670 | 360 | 100 | Plus |
2R | 25286936 | 2R | 7045949..7046013 | 12..76 | 310 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:08:08 has no hits.
BS07265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:52 Download gff for
BS07265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:12 Download gff for
BS07265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 174..844 | 9..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:27 Download gff for
BS07265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 186..839 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:52 Download gff for
BS07265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 174..844 | 9..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:52 Download gff for
BS07265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 186..839 | 17..670 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:52 Download gff for
BS07265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7045954..7046013 | 17..76 | 100 | -> | Plus |
2R | 7047277..7047435 | 77..235 | 100 | -> | Plus |
2R | 7047501..7047656 | 236..391 | 100 | -> | Plus |
2R | 7047973..7048179 | 392..598 | 100 | -> | Plus |
2R | 7048244..7048315 | 599..670 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:27 Download gff for
BS07265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2935006..2935161 | 236..391 | 100 | -> | Plus |
arm_2R | 2933459..2933518 | 17..76 | 100 | -> | Plus |
arm_2R | 2934782..2934940 | 77..235 | 100 | -> | Plus |
arm_2R | 2935478..2935684 | 392..598 | 100 | -> | Plus |
arm_2R | 2935749..2935820 | 599..670 | 100 | | Plus |
BS07265.pep Sequence
Translation from 16 to 669
> BS07265.pep
MGCATGTIKYSLFLFNALWAILGILVLIFGGLGWGAMPDAYAIGILILGG
TILVISLFGCCGAVRESPRMLWTYASLLLILLLLIVAFIILNPKDVFKKY
ALQTVENQWELEQTKPGSMDIIQKTYYCCGRDSAQDYLDIKFWNNTVPSS
CCKDDSCVNPLNLYVRGCLIKVEEAFADEATTLGYLEWGLLGFNAVILLL
AIILAIHYTNRRRRYNY*
BS07265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42El-PA | 217 | CG12840-PA | 1..217 | 1..217 | 1150 | 100 | Plus |
Tsp42Ee-PB | 228 | CG10106-PB | 1..228 | 1..217 | 330 | 36.1 | Plus |
Tsp42Ee-PA | 228 | CG10106-PA | 1..228 | 1..217 | 330 | 36.1 | Plus |
Tsp42Ek-PB | 215 | CG12841-PB | 1..215 | 1..217 | 301 | 33.3 | Plus |
Tsp42Ek-PA | 215 | CG12841-PA | 1..215 | 1..217 | 301 | 33.3 | Plus |