Clone BS07265 Report

Search the DGRC for BS07265

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42El-RA
Protein status:BS07265.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07265.3prime Sequence

684 bp (683 high quality bases) assembled on 2006-01-06

> BS07265.3prime
ATGGTCTAGAAAGCTTCTAATAGTTATATCGTCTCCGCCGGTTGGTGTAG
TGAATGGCCAAGATGATGGCCAGCAATAGAATGACAGCGTTGAATCCGAG
CAGACCCCACTCCAAATAGCCCAGAGTGGTTGCCTCATCTGCAAAAGCCT
CCTCCACTTTGATGAGGCAGCCGCGCACATATAGATTCAGTGGATTCACA
CAGCTGTCGTCCTTGCAACAGCTACTTGGAACGGTATTGTTCCAGAATTT
GATATCCAAGTAGTCTTGGGCACTGTCGCGGCCACAGCAATAGTACGTTT
TCTGAATAATATCCATACTGCCAGGCTTCGTCTGCTCCAGCTCCCACTGA
TTCTCCACCGTTTGAAGCGCGTACTTTTTAAATACATCTTTGGGATTCAG
GATGATAAACGCCACTATAAGTAGCAGCAAAATCAGCAGCAGTGACGCAT
ACGTCCAGAGCATGCGCGGCGATTCGCGAACGGCTCCACAGCATCCAAAC
AGGGATATTACCAGGATAGTACCGCCCAGAATTAAGATGCCGATGGCATA
TGCATCTGGCATTGCTCCCCAGCCAAGGCCGCCAAAGATGAGCACCAGGA
TACCGAGTATCGCCCATAAGGCATTGAACAGGAACAGCGAGTACTTTATG
GTGCCCGTTGCGCAACCCATGTCGACTGATAACT

BS07265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12840-PA 654 Tsp42El-RA 1..654 670..17 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-RA 1062 CG12840-RA 181..839 675..17 3280 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7047972..7048180 296..88 1045 100 Minus
2R 25286936 2R 7047276..7047435 611..452 800 100 Minus
2R 25286936 2R 7047500..7047656 452..296 785 100 Minus
2R 25286936 2R 7048244..7048315 88..17 360 100 Minus
2R 25286936 2R 7045949..7046013 675..611 310 98.5 Minus
Blast to na_te.dros performed on 2015-02-10 17:36:53 has no hits.

BS07265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:37 Download gff for BS07265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12840-PA 1..654 17..670 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:53 Download gff for BS07265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12840-PA 1..654 17..670 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:30:32 Download gff for BS07265.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 178..848 10..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:22 Download gff for BS07265.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 178..848 10..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:22 Download gff for BS07265.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7045946..7046013 611..678 97 -> Minus
2R 7047277..7047435 452..610 100 -> Minus
2R 7047501..7047656 296..451 100 -> Minus
2R 7047973..7048179 89..295 100 -> Minus
2R 7048244..7048324 10..88 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:30:32 Download gff for BS07265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2933451..2933518 611..678 97 -> Minus
arm_2R 2934782..2934940 452..610 100 -> Minus
arm_2R 2935006..2935161 296..451 100 -> Minus
arm_2R 2935478..2935684 89..295 100 -> Minus
arm_2R 2935749..2935829 10..88 95   Minus

BS07265.5prime Sequence

684 bp (683 high quality bases) assembled on 2006-01-06

> BS07265.5prime
GAAGTTATCAGTCGACATGGGTTGCGCAACGGGCACCATAAAGTACTCGC
TGTTCCTGTTCAATGCCTTATGGGCGATACTCGGTATCCTGGTGCTCATC
TTTGGCGGCCTTGGCTGGGGAGCAATGCCAGATGCATATGCCATCGGCAT
CTTAATTCTGGGCGGTACTATCCTGGTAATATCCCTGTTTGGATGCTGTG
GAGCCGTTCGCGAATCGCCGCGCATGCTCTGGACGTATGCGTCACTGCTG
CTGATTTTGCTGCTACTTATAGTGGCGTTTATCATCCTGAATCCCAAAGA
TGTATTTAAAAAGTACGCGCTTCAAACGGTGGAGAATCAGTGGGAGCTGG
AGCAGACGAAGCCTGGCAGTATGGATATTATTCAGAAAACGTACTATTGC
TGTGGCCGCGACAGTGCCCAAGACTACTTGGATATCAAATTCTGGAACAA
TACCGTTCCAAGTAGCTGTTGCAAGGACGACAGCTGTGTGAATCCACTGA
ATCTATATGTGCGCGGCTGCCTCATCAAAGTGGAGGAGGCTTTTGCAGAT
GAGGCAACCACTCTGGGCTATTTGGAGTGGGGTCTGCTCGGATTCAACGC
TGTCATTCTATTGCTGGCCATCATCTTGGCCATTCACTACACCAACCGGC
GGAGACGATATAACTATTAGAAGCTTTCTAGACC

BS07265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12840-PA 654 Tsp42El-RA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-RA 1062 CG12840-RA 181..839 12..670 3280 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7047972..7048180 391..599 1045 100 Plus
2R 25286936 2R 7047276..7047435 76..235 800 100 Plus
2R 25286936 2R 7047500..7047656 235..391 785 100 Plus
2R 25286936 2R 7048244..7048315 599..670 360 100 Plus
2R 25286936 2R 7045949..7046013 12..76 310 98.5 Plus
Blast to na_te.dros performed on 2015-02-13 00:26:49 has no hits.

BS07265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:38 Download gff for BS07265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12840-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:55 Download gff for BS07265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12840-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:24:29 Download gff for BS07265.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 178..848 9..677 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:59 Download gff for BS07265.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 178..848 9..677 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:59 Download gff for BS07265.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7047501..7047656 236..391 100 -> Plus
2R 7047973..7048179 392..598 100 -> Plus
2R 7048244..7048324 599..677 95   Plus
2R 7045946..7046013 9..76 97 -> Plus
2R 7047277..7047435 77..235 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:24:29 Download gff for BS07265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2933451..2933518 9..76 97 -> Plus
arm_2R 2934782..2934940 77..235 100 -> Plus
arm_2R 2935006..2935161 236..391 100 -> Plus
arm_2R 2935478..2935684 392..598 100 -> Plus
arm_2R 2935749..2935829 599..677 95   Plus

BS07265.complete Sequence

686 bp (686 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635793

> BS07265.complete
GAAGTTATCAGTCGACATGGGTTGCGCAACGGGCACCATAAAGTACTCGC
TGTTCCTGTTCAATGCCTTATGGGCGATACTCGGTATCCTGGTGCTCATC
TTTGGCGGCCTTGGCTGGGGAGCAATGCCAGATGCATATGCCATCGGCAT
CTTAATTCTGGGCGGTACTATCCTGGTAATATCCCTGTTTGGATGCTGTG
GAGCCGTTCGCGAATCGCCGCGCATGCTCTGGACGTATGCGTCACTGCTG
CTGATTTTGCTGCTACTTATAGTGGCGTTTATCATCCTGAATCCCAAAGA
TGTATTTAAAAAGTACGCGCTTCAAACGGTGGAGAATCAGTGGGAGCTGG
AGCAGACGAAGCCTGGCAGTATGGATATTATTCAGAAAACGTACTATTGC
TGTGGCCGCGACAGTGCCCAAGACTACTTGGATATCAAATTCTGGAACAA
TACCGTTCCAAGTAGCTGTTGCAAGGACGACAGCTGTGTGAATCCACTGA
ATCTATATGTGCGCGGCTGCCTCATCAAAGTGGAGGAGGCTTTTGCAGAT
GAGGCAACCACTCTGGGCTATTTGGAGTGGGGTCTGCTCGGATTCAACGC
TGTCATTCTATTGCTGGCCATCATCTTGGCCATTCACTACACCAACCGGC
GGAGACGATATAACTATTAGAAGCTTTCTAGACCAT

BS07265.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-RA 654 CG12840-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-RA 1062 CG12840-RA 181..839 12..670 3280 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7047972..7048180 391..599 1045 100 Plus
2R 25286936 2R 7047276..7047435 76..235 800 100 Plus
2R 25286936 2R 7047500..7047656 235..391 785 100 Plus
2R 25286936 2R 7048244..7048315 599..670 360 100 Plus
2R 25286936 2R 7045949..7046013 12..76 310 98.5 Plus
Blast to na_te.dros performed on 2014-11-28 00:08:08 has no hits.

BS07265.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:52 Download gff for BS07265.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:12 Download gff for BS07265.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 174..844 9..677 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:27 Download gff for BS07265.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 186..839 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:52 Download gff for BS07265.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 174..844 9..677 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:52 Download gff for BS07265.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 186..839 17..670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:52 Download gff for BS07265.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7045954..7046013 17..76 100 -> Plus
2R 7047277..7047435 77..235 100 -> Plus
2R 7047501..7047656 236..391 100 -> Plus
2R 7047973..7048179 392..598 100 -> Plus
2R 7048244..7048315 599..670 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:27 Download gff for BS07265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2935006..2935161 236..391 100 -> Plus
arm_2R 2933459..2933518 17..76 100 -> Plus
arm_2R 2934782..2934940 77..235 100 -> Plus
arm_2R 2935478..2935684 392..598 100 -> Plus
arm_2R 2935749..2935820 599..670 100   Plus

BS07265.pep Sequence

Translation from 16 to 669

> BS07265.pep
MGCATGTIKYSLFLFNALWAILGILVLIFGGLGWGAMPDAYAIGILILGG
TILVISLFGCCGAVRESPRMLWTYASLLLILLLLIVAFIILNPKDVFKKY
ALQTVENQWELEQTKPGSMDIIQKTYYCCGRDSAQDYLDIKFWNNTVPSS
CCKDDSCVNPLNLYVRGCLIKVEEAFADEATTLGYLEWGLLGFNAVILLL
AIILAIHYTNRRRRYNY*

BS07265.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-PA 217 CG12840-PA 1..217 1..217 1150 100 Plus
Tsp42Ee-PB 228 CG10106-PB 1..228 1..217 330 36.1 Plus
Tsp42Ee-PA 228 CG10106-PA 1..228 1..217 330 36.1 Plus
Tsp42Ek-PB 215 CG12841-PB 1..215 1..217 301 33.3 Plus
Tsp42Ek-PA 215 CG12841-PA 1..215 1..217 301 33.3 Plus