Clone Sequence Records
BS07266.3prime Sequence
857 bp (780 high quality bases) assembled on 2006-01-06
> BS07266.3prime
ATGGTCTAGAAAGCTTTTAAACCCTCAACCAGTACATGGAGGAGCGGATT
CTGTTGTAGTCGGGCAGGTTCTCAACGGGACCCACGGCAGCGACGGCTGG
GCACCGATCGTAGATGTACTTCATTGCGACGTCGCGCACATTGCCCACAC
TCACGGCATCGATGCGCTGCTCCAGCTCGTGCAGCGGGATGCGGCGGTTG
TAGCACAGGATCTGGCGGCCAATGTCCTCGCAGATGGGTGTGGTGCCGTC
GAGCTGCAGCAGCATGTTGGTCTTCAGAAGGTTCTTGGCGCGCTCGACCT
CAGCCTCGGTAACCATGGTGCACAGACGCATCCACTCGGTCTGCACGTTG
AAGAGCATATCCTCGCACTGCAGAGGGTCGCACACGAAGTAAATGCCCCA
GAGTCCGGTGTCCTTGTAGCATGTGTTGAACGATTGGAAGCTGTGGCAAA
GGTTGTCCTCAGCGCTGGCACGGGCCAGGTTGGAGGCGTTGTTGGCGCCA
CCGCCTTGGGAACGATCCCAAGCACCCACCAAGGTGTTGGCCACCATCAG
GGGGATGTTGTCCTGGTCGGTCCAGCCGCAGCCTTCGACGGCGATGGCGA
CATGGGCCAGGGGCAGGGAATCGTCGCGCACACGCACCTCGGAGCCGGTG
AAGCGGCAGGGAGTCACCTCCGCGGGCAGCACACTGGCCTCCAGGCCACC
CAAGCTGCTGCAGGCAAGCTTGACCAGATCATCGTGCTTGACGCCGCCAG
CAGCGGCCAGAACGATGCGCGAAGCCTTGTAGTGGGTCTGGATGTAGTCG
GTCAGATCGGCCTTGCCAATGGACTGAATGTTCTTGGTGGGTCCCAGGAT
GGTCTGG
BS07266.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-PA | 1413 | CG3731-RA | 573..1413 | 857..17 | 4205 | 100 | Minus |
| CG3731-PB | 1413 | CG3731-RB | 573..1413 | 857..17 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-RB | 1560 | CG3731-RB | 628..1468 | 857..17 | 4205 | 100 | Minus |
| CG3731-RA | 1632 | CG3731-RA | 700..1540 | 857..17 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14891353..14891723 | 824..454 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 14891949..14892295 | 363..17 | 1735 | 100 | Minus |
| 3R | 32079331 | 3R | 14891785..14891877 | 453..361 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:55:59 has no hits.
BS07266.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:39 Download gff for
BS07266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-PB | 573..1413 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:56 Download gff for
BS07266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-PB | 573..1413 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:39:33 Download gff for
BS07266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 853..1699 | 11..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:26 Download gff for
BS07266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 700..1546 | 11..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:26 Download gff for
BS07266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14891785..14891876 | 362..453 | 100 | -> | Minus |
| 3R | 14891258..14891290 | 825..857 | 100 | -> | Minus |
| 3R | 14891353..14891723 | 454..824 | 100 | -> | Minus |
| 3R | 14891951..14892301 | 11..361 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:39:33 Download gff for
BS07266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10716980..10717012 | 825..857 | 100 | -> | Minus |
| arm_3R | 10717075..10717445 | 454..824 | 100 | -> | Minus |
| arm_3R | 10717507..10717598 | 362..453 | 100 | -> | Minus |
| arm_3R | 10717673..10718023 | 11..361 | 99 | | Minus |
BS07266.5prime Sequence
900 bp (741 high quality bases) assembled on 2006-01-06
> BS07266.5prime
GAAGTTATCAGTCGACATGGCGTTGCGAGTTCTTGGCGTGACGCAGAATA
TGCGCTCCTTCATGCGGGGCGTTGACATGATCAAACGATACAAGTCGGCT
GCCACCCTACAGAAGACTCTGCTGAACATACCCGCCACCCAGGTGACCAA
GCTGGACAACGGTCTCCGCGTGGCTAGCGAGGATTCCGGTGCCTCTACCG
CCACCGTGGGACTGTGGATCGATGCTGGGTCGCGCTCCGAGAACGAGAAG
AACAACGGAGTGGCCCACTTCCTGGAGCACATGGCCTTCAAGGGTACCGC
CAAGCGCTCGCAAACGGATTTGGAGCTGGAGGTTGAGAACCTGGGCGCCC
ACTTGAACGCCTACACTTCCAGGGAGCAGACCGTCTTCTACGCCAAGTGT
TTGTCCAAGGATGTGCCCAAAGCCGTCGAGATCCTGGCCGACATCATCCA
GAACTCCAAGCTGGGTGAGGCTGAGATCGCCCGCGAGCGTTCGGTGATTC
TGCGCGAGATGCAGGAGGTGGAGAGCAACCTGCAGGAGGTGGTCTTCGAT
CACCTTCACGCCACCGCCTATCAGGGCACTCCTCTGGGCCAGACCATCCT
GGGACCCACCAAGAACATTCAGTCCATTGGCAAGGCCGATCTGACCGACT
ACATCCAGACCCACTACAAGGCTTCGCGCATCGTTCTGGCCGCTGCTGGC
GGCGTCAAGCACGATGATCTGGTCAAGCTTGCCTGCAGCAGCTTGGGTGG
CCTGGAGGCCAGTGTGCTGCCCGCGGAGGTGACTCCCTGCCGCTTCACCG
GCTCCGAGGTGCGTGTGCGCGACGATTCCCTGCCCCTGGCCCATGTCGCC
ATCGCCGTCGAAGGCTGCGGCTGGACCGACCAGGACAACATCCCCCTGAT
BS07266.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-PA | 1413 | CG3731-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
| CG3731-PB | 1413 | CG3731-RB | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-RB | 1560 | CG3731-RB | 56..939 | 17..900 | 4420 | 100 | Plus |
| CG3731-RA | 1632 | CG3731-RA | 128..1011 | 17..900 | 4420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14890960..14891292 | 291..623 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 14891353..14891631 | 622..900 | 1395 | 100 | Plus |
| 3R | 32079331 | 3R | 14890696..14890903 | 86..293 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 14890358..14890426 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:53:47 has no hits.
BS07266.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:40 Download gff for
BS07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-PB | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:55:58 Download gff for
BS07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-PB | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:45:25 Download gff for
BS07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 281..1164 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:44 Download gff for
BS07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 128..1011 | 17..900 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:44 Download gff for
BS07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14890358..14890426 | 17..85 | 100 | -> | Plus |
| 3R | 14890696..14890902 | 86..292 | 100 | -> | Plus |
| 3R | 14890962..14891290 | 293..621 | 100 | -> | Plus |
| 3R | 14891353..14891631 | 622..900 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:45:25 Download gff for
BS07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10716080..10716148 | 17..85 | 100 | -> | Plus |
| arm_3R | 10716418..10716624 | 86..292 | 100 | -> | Plus |
| arm_3R | 10716684..10717012 | 293..621 | 100 | -> | Plus |
| arm_3R | 10717075..10717353 | 622..900 | 100 | | Plus |
BS07266.complete Sequence
1445 bp (1445 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635794
> BS07266.complete
GAAGTTATCAGTCGACATGGCGTTGCGAGTTCTTGGCGTGACGCAGAATA
TGCGCTCCTTCATGCGGGGCGTTGACATGATCAAACGATACAAGTCGGCT
GCCACCCTACAGAAGACTCTGCTGAACATACCCGCCACCCAGGTGACCAA
GCTGGACAACGGTCTCCGCGTGGCTAGCGAGGATTCCGGTGCCTCTACCG
CCACCGTGGGACTGTGGATCGATGCTGGGTCGCGCTCCGAGAACGAGAAG
AACAACGGAGTGGCCCACTTCCTGGAGCACATGGCCTTCAAGGGTACCGC
CAAGCGCTCGCAAACGGATTTGGAGCTGGAGGTTGAGAACCTGGGCGCCC
ACTTGAACGCCTACACTTCCAGGGAGCAGACCGTCTTCTACGCCAAGTGT
TTGTCCAAGGATGTGCCCAAAGCCGTCGAGATCCTGGCCGACATCATCCA
GAACTCCAAGCTGGGTGAGGCTGAGATCGCCCGCGAGCGTTCGGTGATTC
TGCGCGAGATGCAGGAGGTGGAGAGCAACCTGCAGGAGGTGGTCTTCGAT
CACCTTCACGCCACCGCCTATCAGGGCACTCCTCTGGGCCAGACCATCCT
GGGACCCACCAAGAACATTCAGTCCATTGGCAAGGCCGATCTGACCGACT
ACATCCAGACCCACTACAAGGCTTCGCGCATCGTTCTGGCCGCTGCTGGC
GGCGTCAAGCACGATGATCTGGTCAAGCTTGCCTGCAGCAGCTTGGGTGG
CCTGGAGGCCAGTGTGCTGCCCGCGGAGGTGACTCCCTGCCGCTTCACCG
GCTCCGAGGTGCGTGTGCGCGACGATTCCCTGCCCCTGGCCCATGTCGCC
ATCGCCGTCGAAGGCTGCGGCTGGACCGACCAGGACAACATCCCCCTGAT
GGTGGCCAACACCTTGGTGGGTGCTTGGGATCGTTCCCAAGGCGGTGGCG
CCAACAACGCCTCCAACCTGGCCCGTGCCAGCGCTGAGGACAACCTTTGC
CACAGCTTCCAATCGTTCAACACATGCTACAAGGACACCGGACTCTGGGG
CATTTACTTCGTGTGCGACCCTCTGCAGTGCGAGGATATGCTCTTCAACG
TGCAGACCGAGTGGATGCGTCTGTGCACCATGGTTACCGAGGCTGAGGTC
GAGCGCGCCAAGAACCTTCTGAAGACCAACATGCTGCTGCAGCTCGACGG
CACCACACCCATCTGCGAGGACATTGGCCGCCAGATCCTGTGCTACAACC
GCCGCATCCCGCTGCACGAGCTGGAGCAGCGCATCGATGCCGTGAGTGTG
GGCAATGTGCGCGACGTCGCAATGAAGTACATCTACGATCGGTGCCCAGC
CGTCGCTGCCGTGGGTCCCGTTGAGAACCTGCCCGACTACAACAGAATCC
GCTCCTCCATGTACTGGTTGAGGGTTTAAAAGCTTTCTAGACCAT
BS07266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-RB | 1413 | CG3731-PB | 1..1413 | 17..1429 | 7065 | 100 | Plus |
| CG3731-RA | 1413 | CG3731-PA | 1..1413 | 17..1429 | 7065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-RB | 1560 | CG3731-RB | 56..1468 | 17..1429 | 7065 | 100 | Plus |
| CG3731-RA | 1632 | CG3731-RA | 128..1540 | 17..1429 | 7065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14891353..14891723 | 622..992 | 1855 | 100 | Plus |
| 3R | 32079331 | 3R | 14891949..14892295 | 1083..1429 | 1735 | 100 | Plus |
| 3R | 32079331 | 3R | 14890960..14891292 | 291..623 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 14890696..14890903 | 86..293 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 14891785..14891877 | 993..1085 | 465 | 100 | Plus |
| 3R | 32079331 | 3R | 14890358..14890426 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:40:32 has no hits.
BS07266.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:55 Download gff for
BS07266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RB | 1..1413 | 17..1429 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:15 Download gff for
BS07266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RB | 209..1627 | 17..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:20 Download gff for
BS07266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 281..1691 | 17..1427 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:55 Download gff for
BS07266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RB | 209..1627 | 17..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:38 Download gff for
BS07266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 128..1538 | 17..1427 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:38 Download gff for
BS07266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14890358..14890426 | 17..85 | 100 | -> | Plus |
| 3R | 14890696..14890902 | 86..292 | 100 | -> | Plus |
| 3R | 14890962..14891290 | 293..621 | 100 | -> | Plus |
| 3R | 14891353..14891723 | 622..992 | 100 | -> | Plus |
| 3R | 14891785..14891876 | 993..1084 | 100 | -> | Plus |
| 3R | 14891951..14892293 | 1085..1427 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:20 Download gff for
BS07266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10716418..10716624 | 86..292 | 100 | -> | Plus |
| arm_3R | 10716684..10717012 | 293..621 | 100 | -> | Plus |
| arm_3R | 10716080..10716148 | 17..85 | 100 | -> | Plus |
| arm_3R | 10717075..10717445 | 622..992 | 100 | -> | Plus |
| arm_3R | 10717507..10717598 | 993..1084 | 100 | -> | Plus |
| arm_3R | 10717673..10718015 | 1085..1427 | 100 | | Plus |
BS07266.pep Sequence
Translation from 16 to 1428
> BS07266.pep
MALRVLGVTQNMRSFMRGVDMIKRYKSAATLQKTLLNIPATQVTKLDNGL
RVASEDSGASTATVGLWIDAGSRSENEKNNGVAHFLEHMAFKGTAKRSQT
DLELEVENLGAHLNAYTSREQTVFYAKCLSKDVPKAVEILADIIQNSKLG
EAEIARERSVILREMQEVESNLQEVVFDHLHATAYQGTPLGQTILGPTKN
IQSIGKADLTDYIQTHYKASRIVLAAAGGVKHDDLVKLACSSLGGLEASV
LPAEVTPCRFTGSEVRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVANTL
VGAWDRSQGGGANNASNLARASAEDNLCHSFQSFNTCYKDTGLWGIYFVC
DPLQCEDMLFNVQTEWMRLCTMVTEAEVERAKNLLKTNMLLQLDGTTPIC
EDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYIYDRCPAVAAVG
PVENLPDYNRIRSSMYWLRV*
BS07266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-PB | 470 | CG3731-PB | 1..470 | 1..470 | 2429 | 100 | Plus |
| CG3731-PA | 470 | CG3731-PA | 1..470 | 1..470 | 2429 | 100 | Plus |
| CG8728-PA | 556 | CG8728-PA | 94..540 | 41..465 | 454 | 28.5 | Plus |
| CG4169-PB | 440 | CG4169-PB | 20..434 | 29..456 | 208 | 21.6 | Plus |
| CG4169-PA | 440 | CG4169-PA | 20..434 | 29..456 | 208 | 21.6 | Plus |
