Clone BS07268 Report

Search the DGRC for BS07268

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptIr93a-RC
Protein status:BS07268.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07268.3prime Sequence

939 bp (865 high quality bases) assembled on 2006-01-06

> BS07268.3prime
ATGGTCTAGAAAGCTTTCAGTTGGTGAACTGACGCCGTTTTCGACTGGCC
CGAAAGCGACGATACCAGAACTCGCCGCACACTATTAAAAGAGCCAACGT
GAAGCCCAAGAGCAGGACCAGAAAGCACCCTTGCATGTCGTCCATGTTCA
CCTTGTGGTTGGTAACCTGGCGCTGGGCGCTCTTCCCGTTGCACTTGCCC
GCGCTGGGTAAGTTCATCTGGTGCCAGCGCTCGATGAAGCCCATCCGGAA
CATGCTCTTGATGTGGCGGTTTACCAGGTGCAGATACGCACTCTGGGCCG
GCACAATCATGGCAATCTGCTCGTCCACGAAGCTCTCCCTGCCCAAAGCA
AAGTGGCACTCCTTCTCCCGCTCGAAGTGCCGCTGAACAATCAACTGCAG
ATTGATCCGCCAATCGATGTTGATGCGCTCGCCACGCTTCACCGCCTCGA
TGTCCTCCTCTTGGGCGCTGCCGTAGATTTTCGCCCGTTCCAGGTAGTGT
TTGAAGTCCTCCCGCGTTGTCGACTGAACGTACCGCTCGAAGAAGGTGCC
GTTTCGCAATCCATACTGTACAATGTCCTTGTGGTCCTCTAGTTGATTCA
AATAGTCCACGCCCGGTTGAAATTTGGGGAACGTGAGGAAGGCCACAAGG
TTGCCGCAATAGGTGGTCACCAGCACGATAACCACGATCCACCAAAAGCC
GACCACTAGGCGCCCACTGTCTGCTGTGGGCAAGTACATGCCTCCCTGTT
GTAACAAAGCCCCGAATATATACCAAAAACAGCTCTTAACTGTGGACAGG
CCCACGATTCGCATCTCCTTCAGAGGAGCTAGGCGATTAATGGCGTACAG
CGTGGGAGCAGTCAGCAGAATGATGCCCATTANGCAGAAACCAGTCTCCA
CGGTGAAGGGTGCCGTGAACAAGTAAATGCGGGACACCT

BS07268.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17274-PA 1914 CG17274-RA 992..1914 939..17 4546 99.6 Minus
CG17274-PB 1578 CG17274-RB 656..1578 939..17 4546 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Ir93a-RD 2742 CG42315-RD 1685..2607 939..17 4574 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20851844..20852572 17..745 3645 100 Plus
3R 32079331 3R 20852695..20852890 744..939 939 98.5 Plus
Blast to na_te.dros performed on 2015-02-12 03:57:07 has no hits.

BS07268.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:44 Download gff for BS07268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17274-PA 992..1914 17..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:01 Download gff for BS07268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17274-PB 656..1578 17..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:28 Download gff for BS07268.3prime
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 1685..2612 12..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:54 Download gff for BS07268.3prime
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 1685..2612 12..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:54 Download gff for BS07268.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20852696..20852890 745..939 98   Plus
3R 20851839..20852571 12..744 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:28 Download gff for BS07268.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16677561..16678293 12..744 99 <- Plus
arm_3R 16678418..16678612 745..939 98   Plus

BS07268.5prime Sequence

930 bp (788 high quality bases) assembled on 2006-01-06

> BS07268.5prime
GAAGTTATCAGTCGACATGCGCCAGCAGTTCCTGGTCATATCTGCCTTTC
ACGAGGACATCATCGAAATAGCCGAGACCCTGAACATGTTTCACGTGGGC
AATCAGTGGATGATTTTCGTGCTGGACATGGTGGCTCGGGACTTCGATGC
CGGCACTGTGACCATAAACCTGGACGAGGGAGCCAACATAGCCTTCGCCC
TCAACGAAACGGATCCCAACTGCCAGGACTCGCTAAACTGCACGATCTCG
GAAATTAGTCTCGCTCTGGTCAACGCTATTTCCAAAATTACCGTCGAGGA
GGAGTCCATATATGGTGAGATCTCCGATGAGGAATGGGAGGCCATCCGCT
TTACCAAGCAGGAAAAGCAGGCCGAGATTCTGGAGTACATGAAGGAATTC
CTGAAGACCAATGCCAAGTGCTCCAGCTGCGCGAGATGGCGCGTGGAGAC
GGCCATTACCTGGGGCAAAAGCCAGGAGAATCGCAAGTTTCGCTCAACTC
CCCAACGCGACGCTAAGAACCGAAATTTTGAGTTCATCAACATTGGCTAT
TGGACACCCGTGCTGGGATTCGTCTGCCAGGAGCTCGCCTTTCCGCACAT
CGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACAATC
CACCCTGGCAAATCCTTACCAAGAACAGCAATGGGGTCATCGTGGAGCAC
AAGGGCATTGTTATGGAGATCGTCAAGGAGCTGAGTCGCGCCCTAAACTT
CAGCTACTACCTTCACGAAGCCTCCGCATGGAAGGAAGAAGATTCACTCA
GCACATCAGCGGGCGGAAATGAAAGCGACGAGCTAGTTGGTTCCATGACC
TTTCGTATACCCTATCGAGTGGTGGAGATGGTGCAGGGGCATCAGTTTTT
CATCGCTGCCGTGGCAGCCACCGGTGAGGG

BS07268.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17274-PA 1914 CG17274-RA 1..913 17..929 4490 99.6 Plus
CG17274-PB 1578 CG17274-RB 41..577 393..929 2610 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ir93a-RD 2742 CG42315-RD 694..1606 17..929 4520 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20853873..20854251 395..17 1895 100 Minus
3R 32079331 3R 20853124..20853308 827..643 910 99.5 Minus
3R 32079331 3R 20853359..20853507 646..498 745 100 Minus
3R 32079331 3R 20853565..20853669 497..393 525 100 Minus
3R 32079331 3R 20852969..20853071 929..827 470 97.1 Minus
Blast to na_te.dros performed on 2015-02-12 07:26:28 has no hits.

BS07268.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:45 Download gff for BS07268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17274-PA 1..913 17..930 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:02 Download gff for BS07268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17274-PA 1..913 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:24:57 Download gff for BS07268.5prime
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 689..1606 10..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:58:37 Download gff for BS07268.5prime
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 689..1606 10..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:37 Download gff for BS07268.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20853874..20854256 10..394 99   Minus
3R 20853125..20853304 647..826 100 <- Minus
3R 20853359..20853507 498..646 100 <- Minus
3R 20852968..20853071 827..930 96 <- Minus
3R 20853565..20853667 395..497 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:24:57 Download gff for BS07268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16678690..16678793 827..930 96 <- Minus
arm_3R 16678847..16679026 647..826 100 <- Minus
arm_3R 16679081..16679229 498..646 100 <- Minus
arm_3R 16679287..16679389 395..497 100 <- Minus
arm_3R 16679596..16679978 10..394 99   Minus

BS07268.complete Sequence

1946 bp assembled on 2008-01-02

GenBank Submission: FJ635796

> BS07268.complete
GAAGTTATCAGTCGACATGCGCCAGCAGTTCCTGGTCATATCTGCCTTTC
ACGAGGACATCATCGAAATAGCCGAGACCCTGAACATGTTTCACGTGGGC
AATCAGTGGATGATTTTCGTGCTGGACATGGTGGCTCGGGACTTCGATGC
CGGCACTGTGACCATAAACCTGGACGAGGGAGCCAACATAGCCTTCGCCC
TCAACGAAACGGATCCCAACTGCCAGGACTCGCTAAACTGCACGATCTCG
GAAATTAGTCTCGCTCTGGTCAACGCTATTTCCAAAATTACCGTCGAGGA
GGAGTCCATATATGGTGAGATCTCCGATGAGGAATGGGAGGCCATCCGCT
TTACCAAGCAGGAAAAGCAGGCCGAGATTCTGGAGTACATGAAGGAATTC
CTGAAGACCAATGCCAAGTGCTCCAGCTGCGCGAGATGGCGCGTGGAGAC
GGCCATTACCTGGGGCAAAAGCCAGGAGAATCGCAAGTTTCGCTCAACTC
CCCAACGCGACGCTAAGAACCGAAATTTTGAGTTCATCAACATTGGCTAT
TGGACACCCGTGCTGGGATTCGTCTGCCAGGAGCTCGCCTTTCCGCACAT
CGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACAATC
CACCCTGGCAAATCCTTACCAAGAACAGCAATGGGGTCATCGTGGAGCAC
AAGGGCATTGTTATGGAGATCGTCAAGGAGCTGAGTCGCGCCCTAAACTT
CAGCTACTACCTTCACGAAGCCTCCGCATGGAAGGAAGAAGATTCACTCA
GCACATCAGCGGGCGGAAATGAAAGCGACGAGCTAGTTGGTTCCATGACC
TTTCGTATACCCTATCGAGTGGTGGAGATGGTGCAGGGCAATCAGTTTTT
CATCGCTGCCGTGGCAGCCACCGTTGAGGATCCCGACCAAAAGCCCTTCA
ATTATACCCAGCCCATCAGTGTGCAGAAGTACTCCTTCATCACCCGCAAG
CCGGATGAGGTGTCCCGCATTTACTTGTTCACGGCACCCTTCACCGTGGA
GACTTGGTTCTGCCTAATGGGCATCATTCTGCTGACTGCTCCCACGCTGT
ACGCCATTAATCGCCTAGCTCCTCTGAAGGAGATGCGAATCGTGGGCCTG
TCCACAGTTAAGAGCTGTTTTTGGTATATATTCGGGGCTTTGTTACAACA
GGGAGGCATGTACTTGCCCACAGCAGACAGTGGGCGCCTAGTGGTCGGCT
TTTGGTGGATCGTGGTTATCGTGCTGGTGACCACCTATTGCGGCAACCTT
GTGGCCTTCCTCACGTTCCCCAAATTTCAACCGGGCGTGGACTATTTGAA
TCAACTAGAGGACCACAAGGACATTGTACAGTATGGATTGCGAAACGGCA
CCTTCTTCGAGCGGTACGTTCAGTCGACAACGCGGGAGGACTTCAAACAC
TACCTGGAACGGGCGAAAATCTACGGCAGCGCCCAAGAGGAGGACATCGA
GGCGGTGAAGCGTGGCGAGCGCATCAACATCGATTGGCGGATCAATCTGC
AGTTGATTGTTCAGCGGCACTTCGAGCGGGAGAAGGAGTGCCACTTTGCT
TTGGGCAGGGAGAGCTTCGTGGACGAGCAGATTGCCATGATTGTGCCGGC
CCAGAGTGCGTATCTGCACCTGGTAAACCGCCACATCAAGAGCATGTTCC
GGATGGGCTTCATCGAGCGCTGGCACCAGATGAACTTACCCAGCGCGGGC
AAGTGCAACGGGAAGAGCGCCCAGCGCCAGGTTACCAACCACAAGGTGAA
CATGGACGACATGCAAGGGTGCTTTCTGGTCCTGCTCTTGGGCTTCACGT
TGGCTCTTTTAATAGTGTGCGGCGAGTTCTGGTATCGTCGCTTTCGGGCC
AGTCGAAAACGGCGTCAGTTCACCAACTGAAAGCTTTCTAGACCAT

BS07268.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ir93a-RD 2607 CG42315-PD 694..2607 17..1930 9570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ir93a-RD 2742 CG42315-RD 694..2607 17..1930 9570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20851844..20852572 1930..1202 3645 100 Minus
3R 32079331 3R 20853873..20854251 395..17 1895 100 Minus
3R 32079331 3R 20852695..20853071 1203..827 1885 100 Minus
3R 32079331 3R 20853124..20853308 827..643 910 99.5 Minus
3R 32079331 3R 20853359..20853507 646..498 745 100 Minus
3R 32079331 3R 20853565..20853669 497..393 525 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:14:55 has no hits.

BS07268.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:10 Download gff for BS07268.complete
Subject Subject Range Query Range Percent Splice Strand
CG42315-RC 1..1914 17..1930 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:58 Download gff for BS07268.complete
Subject Subject Range Query Range Percent Splice Strand
CG42315-RC 338..2250 17..1929 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:54 Download gff for BS07268.complete
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 694..2606 17..1929 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:10 Download gff for BS07268.complete
Subject Subject Range Query Range Percent Splice Strand
CG42315-RC 333..2256 10..1935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:36 Download gff for BS07268.complete
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 694..2606 17..1929 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:36 Download gff for BS07268.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20851845..20852571 1203..1929 100 <- Minus
3R 20852696..20853071 827..1202 100 <- Minus
3R 20853125..20853304 647..826 100 <- Minus
3R 20853359..20853507 498..646 100 <- Minus
3R 20853565..20853667 395..497 100 <- Minus
3R 20853874..20854251 17..394 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:54 Download gff for BS07268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16678847..16679026 647..826 100 <- Minus
arm_3R 16679081..16679229 498..646 100 <- Minus
arm_3R 16679287..16679389 395..497 100 <- Minus
arm_3R 16677567..16678293 1203..1929 100 <- Minus
arm_3R 16678418..16678793 827..1202 100 <- Minus
arm_3R 16679596..16679973 17..394 100   Minus

BS07268.pep Sequence

Translation from 16 to 1929

> BS07268.pep
MRQQFLVISAFHEDIIEIAETLNMFHVGNQWMIFVLDMVARDFDAGTVTI
NLDEGANIAFALNETDPNCQDSLNCTISEISLALVNAISKITVEEESIYG
EISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRVETAITWG
KSQENRKFRSTPQRDAKNRNFEFINIGYWTPVLGFVCQELAFPHIEHHFR
NITMDILTVHNPPWQILTKNSNGVIVEHKGIVMEIVKELSRALNFSYYLH
EASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQFFIAAVA
ATVEDPDQKPFNYTQPISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCL
MGIILLTAPTLYAINRLAPLKEMRIVGLSTVKSCFWYIFGALLQQGGMYL
PTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDH
KDIVQYGLRNGTFFERYVQSTTREDFKHYLERAKIYGSAQEEDIEAVKRG
ERINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQIAMIVPAQSAYL
HLVNRHIKSMFRMGFIERWHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQ
GCFLVLLLGFTLALLIVCGEFWYRRFRASRKRRQFTN*

BS07268.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Ir93a-PD 868 CG42315-PD 232..868 1..637 3355 100 Plus
Ir76b-PA 636 CG7385-PA 87..498 206..624 272 24.3 Plus
GluRIIE-PB 897 CG31201-PB 387..830 174..615 260 22.7 Plus
CG3822-PA 853 CG3822-PA 409..846 195..632 259 20.3 Plus
CG11155-PD 910 CG11155-PD 400..845 176..625 256 20.9 Plus