Clone Sequence Records
BS07268.3prime Sequence
939 bp (865 high quality bases) assembled on 2006-01-06
> BS07268.3prime
ATGGTCTAGAAAGCTTTCAGTTGGTGAACTGACGCCGTTTTCGACTGGCC
CGAAAGCGACGATACCAGAACTCGCCGCACACTATTAAAAGAGCCAACGT
GAAGCCCAAGAGCAGGACCAGAAAGCACCCTTGCATGTCGTCCATGTTCA
CCTTGTGGTTGGTAACCTGGCGCTGGGCGCTCTTCCCGTTGCACTTGCCC
GCGCTGGGTAAGTTCATCTGGTGCCAGCGCTCGATGAAGCCCATCCGGAA
CATGCTCTTGATGTGGCGGTTTACCAGGTGCAGATACGCACTCTGGGCCG
GCACAATCATGGCAATCTGCTCGTCCACGAAGCTCTCCCTGCCCAAAGCA
AAGTGGCACTCCTTCTCCCGCTCGAAGTGCCGCTGAACAATCAACTGCAG
ATTGATCCGCCAATCGATGTTGATGCGCTCGCCACGCTTCACCGCCTCGA
TGTCCTCCTCTTGGGCGCTGCCGTAGATTTTCGCCCGTTCCAGGTAGTGT
TTGAAGTCCTCCCGCGTTGTCGACTGAACGTACCGCTCGAAGAAGGTGCC
GTTTCGCAATCCATACTGTACAATGTCCTTGTGGTCCTCTAGTTGATTCA
AATAGTCCACGCCCGGTTGAAATTTGGGGAACGTGAGGAAGGCCACAAGG
TTGCCGCAATAGGTGGTCACCAGCACGATAACCACGATCCACCAAAAGCC
GACCACTAGGCGCCCACTGTCTGCTGTGGGCAAGTACATGCCTCCCTGTT
GTAACAAAGCCCCGAATATATACCAAAAACAGCTCTTAACTGTGGACAGG
CCCACGATTCGCATCTCCTTCAGAGGAGCTAGGCGATTAATGGCGTACAG
CGTGGGAGCAGTCAGCAGAATGATGCCCATTANGCAGAAACCAGTCTCCA
CGGTGAAGGGTGCCGTGAACAAGTAAATGCGGGACACCT
BS07268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17274-PA | 1914 | CG17274-RA | 992..1914 | 939..17 | 4546 | 99.6 | Minus |
CG17274-PB | 1578 | CG17274-RB | 656..1578 | 939..17 | 4546 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir93a-RD | 2742 | CG42315-RD | 1685..2607 | 939..17 | 4574 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20851844..20852572 | 17..745 | 3645 | 100 | Plus |
3R | 32079331 | 3R | 20852695..20852890 | 744..939 | 939 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:57:07 has no hits.
BS07268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:44 Download gff for
BS07268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17274-PA | 992..1914 | 17..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:01 Download gff for
BS07268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17274-PB | 656..1578 | 17..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:28 Download gff for
BS07268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 1685..2612 | 12..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:54 Download gff for
BS07268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 1685..2612 | 12..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:54 Download gff for
BS07268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20852696..20852890 | 745..939 | 98 | | Plus |
3R | 20851839..20852571 | 12..744 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:28 Download gff for
BS07268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16677561..16678293 | 12..744 | 99 | <- | Plus |
arm_3R | 16678418..16678612 | 745..939 | 98 | | Plus |
BS07268.5prime Sequence
930 bp (788 high quality bases) assembled on 2006-01-06
> BS07268.5prime
GAAGTTATCAGTCGACATGCGCCAGCAGTTCCTGGTCATATCTGCCTTTC
ACGAGGACATCATCGAAATAGCCGAGACCCTGAACATGTTTCACGTGGGC
AATCAGTGGATGATTTTCGTGCTGGACATGGTGGCTCGGGACTTCGATGC
CGGCACTGTGACCATAAACCTGGACGAGGGAGCCAACATAGCCTTCGCCC
TCAACGAAACGGATCCCAACTGCCAGGACTCGCTAAACTGCACGATCTCG
GAAATTAGTCTCGCTCTGGTCAACGCTATTTCCAAAATTACCGTCGAGGA
GGAGTCCATATATGGTGAGATCTCCGATGAGGAATGGGAGGCCATCCGCT
TTACCAAGCAGGAAAAGCAGGCCGAGATTCTGGAGTACATGAAGGAATTC
CTGAAGACCAATGCCAAGTGCTCCAGCTGCGCGAGATGGCGCGTGGAGAC
GGCCATTACCTGGGGCAAAAGCCAGGAGAATCGCAAGTTTCGCTCAACTC
CCCAACGCGACGCTAAGAACCGAAATTTTGAGTTCATCAACATTGGCTAT
TGGACACCCGTGCTGGGATTCGTCTGCCAGGAGCTCGCCTTTCCGCACAT
CGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACAATC
CACCCTGGCAAATCCTTACCAAGAACAGCAATGGGGTCATCGTGGAGCAC
AAGGGCATTGTTATGGAGATCGTCAAGGAGCTGAGTCGCGCCCTAAACTT
CAGCTACTACCTTCACGAAGCCTCCGCATGGAAGGAAGAAGATTCACTCA
GCACATCAGCGGGCGGAAATGAAAGCGACGAGCTAGTTGGTTCCATGACC
TTTCGTATACCCTATCGAGTGGTGGAGATGGTGCAGGGGCATCAGTTTTT
CATCGCTGCCGTGGCAGCCACCGGTGAGGG
BS07268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17274-PA | 1914 | CG17274-RA | 1..913 | 17..929 | 4490 | 99.6 | Plus |
CG17274-PB | 1578 | CG17274-RB | 41..577 | 393..929 | 2610 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir93a-RD | 2742 | CG42315-RD | 694..1606 | 17..929 | 4520 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20853873..20854251 | 395..17 | 1895 | 100 | Minus |
3R | 32079331 | 3R | 20853124..20853308 | 827..643 | 910 | 99.5 | Minus |
3R | 32079331 | 3R | 20853359..20853507 | 646..498 | 745 | 100 | Minus |
3R | 32079331 | 3R | 20853565..20853669 | 497..393 | 525 | 100 | Minus |
3R | 32079331 | 3R | 20852969..20853071 | 929..827 | 470 | 97.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:26:28 has no hits.
BS07268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:45 Download gff for
BS07268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17274-PA | 1..913 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:02 Download gff for
BS07268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17274-PA | 1..913 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:24:57 Download gff for
BS07268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 689..1606 | 10..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:58:37 Download gff for
BS07268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 689..1606 | 10..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:37 Download gff for
BS07268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20853874..20854256 | 10..394 | 99 | | Minus |
3R | 20853125..20853304 | 647..826 | 100 | <- | Minus |
3R | 20853359..20853507 | 498..646 | 100 | <- | Minus |
3R | 20852968..20853071 | 827..930 | 96 | <- | Minus |
3R | 20853565..20853667 | 395..497 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:24:57 Download gff for
BS07268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16678690..16678793 | 827..930 | 96 | <- | Minus |
arm_3R | 16678847..16679026 | 647..826 | 100 | <- | Minus |
arm_3R | 16679081..16679229 | 498..646 | 100 | <- | Minus |
arm_3R | 16679287..16679389 | 395..497 | 100 | <- | Minus |
arm_3R | 16679596..16679978 | 10..394 | 99 | | Minus |
BS07268.complete Sequence
1946 bp assembled on 2008-01-02
GenBank Submission: FJ635796
> BS07268.complete
GAAGTTATCAGTCGACATGCGCCAGCAGTTCCTGGTCATATCTGCCTTTC
ACGAGGACATCATCGAAATAGCCGAGACCCTGAACATGTTTCACGTGGGC
AATCAGTGGATGATTTTCGTGCTGGACATGGTGGCTCGGGACTTCGATGC
CGGCACTGTGACCATAAACCTGGACGAGGGAGCCAACATAGCCTTCGCCC
TCAACGAAACGGATCCCAACTGCCAGGACTCGCTAAACTGCACGATCTCG
GAAATTAGTCTCGCTCTGGTCAACGCTATTTCCAAAATTACCGTCGAGGA
GGAGTCCATATATGGTGAGATCTCCGATGAGGAATGGGAGGCCATCCGCT
TTACCAAGCAGGAAAAGCAGGCCGAGATTCTGGAGTACATGAAGGAATTC
CTGAAGACCAATGCCAAGTGCTCCAGCTGCGCGAGATGGCGCGTGGAGAC
GGCCATTACCTGGGGCAAAAGCCAGGAGAATCGCAAGTTTCGCTCAACTC
CCCAACGCGACGCTAAGAACCGAAATTTTGAGTTCATCAACATTGGCTAT
TGGACACCCGTGCTGGGATTCGTCTGCCAGGAGCTCGCCTTTCCGCACAT
CGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACAATC
CACCCTGGCAAATCCTTACCAAGAACAGCAATGGGGTCATCGTGGAGCAC
AAGGGCATTGTTATGGAGATCGTCAAGGAGCTGAGTCGCGCCCTAAACTT
CAGCTACTACCTTCACGAAGCCTCCGCATGGAAGGAAGAAGATTCACTCA
GCACATCAGCGGGCGGAAATGAAAGCGACGAGCTAGTTGGTTCCATGACC
TTTCGTATACCCTATCGAGTGGTGGAGATGGTGCAGGGCAATCAGTTTTT
CATCGCTGCCGTGGCAGCCACCGTTGAGGATCCCGACCAAAAGCCCTTCA
ATTATACCCAGCCCATCAGTGTGCAGAAGTACTCCTTCATCACCCGCAAG
CCGGATGAGGTGTCCCGCATTTACTTGTTCACGGCACCCTTCACCGTGGA
GACTTGGTTCTGCCTAATGGGCATCATTCTGCTGACTGCTCCCACGCTGT
ACGCCATTAATCGCCTAGCTCCTCTGAAGGAGATGCGAATCGTGGGCCTG
TCCACAGTTAAGAGCTGTTTTTGGTATATATTCGGGGCTTTGTTACAACA
GGGAGGCATGTACTTGCCCACAGCAGACAGTGGGCGCCTAGTGGTCGGCT
TTTGGTGGATCGTGGTTATCGTGCTGGTGACCACCTATTGCGGCAACCTT
GTGGCCTTCCTCACGTTCCCCAAATTTCAACCGGGCGTGGACTATTTGAA
TCAACTAGAGGACCACAAGGACATTGTACAGTATGGATTGCGAAACGGCA
CCTTCTTCGAGCGGTACGTTCAGTCGACAACGCGGGAGGACTTCAAACAC
TACCTGGAACGGGCGAAAATCTACGGCAGCGCCCAAGAGGAGGACATCGA
GGCGGTGAAGCGTGGCGAGCGCATCAACATCGATTGGCGGATCAATCTGC
AGTTGATTGTTCAGCGGCACTTCGAGCGGGAGAAGGAGTGCCACTTTGCT
TTGGGCAGGGAGAGCTTCGTGGACGAGCAGATTGCCATGATTGTGCCGGC
CCAGAGTGCGTATCTGCACCTGGTAAACCGCCACATCAAGAGCATGTTCC
GGATGGGCTTCATCGAGCGCTGGCACCAGATGAACTTACCCAGCGCGGGC
AAGTGCAACGGGAAGAGCGCCCAGCGCCAGGTTACCAACCACAAGGTGAA
CATGGACGACATGCAAGGGTGCTTTCTGGTCCTGCTCTTGGGCTTCACGT
TGGCTCTTTTAATAGTGTGCGGCGAGTTCTGGTATCGTCGCTTTCGGGCC
AGTCGAAAACGGCGTCAGTTCACCAACTGAAAGCTTTCTAGACCAT
BS07268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir93a-RD | 2607 | CG42315-PD | 694..2607 | 17..1930 | 9570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir93a-RD | 2742 | CG42315-RD | 694..2607 | 17..1930 | 9570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20851844..20852572 | 1930..1202 | 3645 | 100 | Minus |
3R | 32079331 | 3R | 20853873..20854251 | 395..17 | 1895 | 100 | Minus |
3R | 32079331 | 3R | 20852695..20853071 | 1203..827 | 1885 | 100 | Minus |
3R | 32079331 | 3R | 20853124..20853308 | 827..643 | 910 | 99.5 | Minus |
3R | 32079331 | 3R | 20853359..20853507 | 646..498 | 745 | 100 | Minus |
3R | 32079331 | 3R | 20853565..20853669 | 497..393 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:14:55 has no hits.
BS07268.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:10 Download gff for
BS07268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42315-RC | 1..1914 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:58 Download gff for
BS07268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42315-RC | 338..2250 | 17..1929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:54 Download gff for
BS07268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 694..2606 | 17..1929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:10 Download gff for
BS07268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42315-RC | 333..2256 | 10..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:36 Download gff for
BS07268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 694..2606 | 17..1929 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:36 Download gff for
BS07268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20851845..20852571 | 1203..1929 | 100 | <- | Minus |
3R | 20852696..20853071 | 827..1202 | 100 | <- | Minus |
3R | 20853125..20853304 | 647..826 | 100 | <- | Minus |
3R | 20853359..20853507 | 498..646 | 100 | <- | Minus |
3R | 20853565..20853667 | 395..497 | 100 | <- | Minus |
3R | 20853874..20854251 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:54 Download gff for
BS07268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16678847..16679026 | 647..826 | 100 | <- | Minus |
arm_3R | 16679081..16679229 | 498..646 | 100 | <- | Minus |
arm_3R | 16679287..16679389 | 395..497 | 100 | <- | Minus |
arm_3R | 16677567..16678293 | 1203..1929 | 100 | <- | Minus |
arm_3R | 16678418..16678793 | 827..1202 | 100 | <- | Minus |
arm_3R | 16679596..16679973 | 17..394 | 100 | | Minus |
BS07268.pep Sequence
Translation from 16 to 1929
> BS07268.pep
MRQQFLVISAFHEDIIEIAETLNMFHVGNQWMIFVLDMVARDFDAGTVTI
NLDEGANIAFALNETDPNCQDSLNCTISEISLALVNAISKITVEEESIYG
EISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRVETAITWG
KSQENRKFRSTPQRDAKNRNFEFINIGYWTPVLGFVCQELAFPHIEHHFR
NITMDILTVHNPPWQILTKNSNGVIVEHKGIVMEIVKELSRALNFSYYLH
EASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQFFIAAVA
ATVEDPDQKPFNYTQPISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCL
MGIILLTAPTLYAINRLAPLKEMRIVGLSTVKSCFWYIFGALLQQGGMYL
PTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDH
KDIVQYGLRNGTFFERYVQSTTREDFKHYLERAKIYGSAQEEDIEAVKRG
ERINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQIAMIVPAQSAYL
HLVNRHIKSMFRMGFIERWHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQ
GCFLVLLLGFTLALLIVCGEFWYRRFRASRKRRQFTN*
BS07268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir93a-PD | 868 | CG42315-PD | 232..868 | 1..637 | 3355 | 100 | Plus |
Ir76b-PA | 636 | CG7385-PA | 87..498 | 206..624 | 272 | 24.3 | Plus |
GluRIIE-PB | 897 | CG31201-PB | 387..830 | 174..615 | 260 | 22.7 | Plus |
CG3822-PA | 853 | CG3822-PA | 409..846 | 195..632 | 259 | 20.3 | Plus |
CG11155-PD | 910 | CG11155-PD | 400..845 | 176..625 | 256 | 20.9 | Plus |