Clone Sequence Records
BS07269.3prime Sequence
942 bp (788 high quality bases) assembled on 2006-01-06
> BS07269.3prime
ATGGTCTAGAAAGCTTTTAATTCGTTTTCTCCGACGGGCAGTCACAGGTG
ATGCTGTGGGTATTTCCCAGCAGATCCTTGGGGTCAACGTAGACAGTGCC
CTCCTTGCCTCGAGCAAAAGGTGTATGTCCGTTGGTTTGTAAGTAAAAGT
CGCCATGAATTGTCGTGGGACAATGATGACCCATCACCACGGGCGGGCAA
TTCTCTACTATTTTGTTCTGCTTGAAGTCCGACCATTTCTTGGCGGGCAC
AGCATCGAATCCAATGGGATATCGATCCGAAACGCTCTCGGCCCAGAACC
ACCAGCTCCTCCGATGACTGGACAGATCGTTGTCGCTGAGCATCTTGTAG
TTTCGCTTGGGACAGCCAGGCTGCAGGCTGTATCCACCATTTGGCCAGAA
ATCCGCCGTGCCCGTGCTCGTCGGAGCTCCGTACAGCCAGGCGTCCGTGT
GTATCACGTCGACGAACTCCGCATCATTGGCAGACAGGTGCGTGCCCGGA
TAGAAGAGCGGAAATGCGGGATCCAAAGCGGAAATTCTTTTTATCTTTCT
GACACCCTTGGTGCGTTTAGTAATCTCTCGGCCGAGGAGTCCGGCCAGCT
GGCCGCCCATCGAGTGTCCGACAATGTGGAACTTCTCAATGTCCAGGCCA
TGGTCGAACATTTTGAGCAGGACCTTGGCCAACTCTGGGCCCAGCTGTTT
GAGGTTCGGGAAGGCATCGAACATGTAATTGCCATCGGCCAGTTCACCCC
AGTCTAGGACGATAAGATTGGTATCCTTTCGCTCCAGATAGGCCTCGGCT
ATGACGTGAATGCTCTCCACATCCGGATCTTCCAAGTAGCCGTGCAAATA
GAGCACGGTGTTCTTGCCCAAATCCAAGTGCTCGTCCTCCAGAAGACTCT
GGAAATCGGTTAGGTCATAGATATCGCTATCTGCCACCGTGG
BS07269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-PA | 1023 | CG17292-RA | 98..1023 | 942..17 | 4630 | 100 | Minus |
CG17292-PB | 1023 | CG17292-RB | 98..1023 | 942..17 | 4630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-RD | 1473 | CG17292-RD | 426..1351 | 942..17 | 4630 | 100 | Minus |
CG17292-RC | 2003 | CG17292-RC | 956..1881 | 942..17 | 4630 | 100 | Minus |
CG17292-RB | 1397 | CG17292-RB | 350..1275 | 942..17 | 4630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8372883..8373288 | 942..537 | 2030 | 100 | Minus |
2L | 23513712 | 2L | 8373538..8373914 | 538..162 | 1885 | 100 | Minus |
2L | 23513712 | 2L | 8373984..8374128 | 161..17 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:38:48 has no hits.
BS07269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:46 Download gff for
BS07269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-PB | 98..1023 | 17..942 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:04 Download gff for
BS07269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-PB | 98..1023 | 17..942 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:30:43 Download gff for
BS07269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RA | 207..1144 | 7..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:31 Download gff for
BS07269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 350..1287 | 7..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:31 Download gff for
BS07269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8372883..8373288 | 537..942 | 100 | -> | Minus |
2L | 8373540..8373914 | 162..536 | 100 | -> | Minus |
2L | 8373984..8374140 | 7..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:30:43 Download gff for
BS07269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8372883..8373288 | 537..942 | 100 | -> | Minus |
arm_2L | 8373540..8373914 | 162..536 | 100 | -> | Minus |
arm_2L | 8373984..8374140 | 7..161 | 97 | | Minus |
BS07269.5prime Sequence
859 bp (824 high quality bases) assembled on 2006-01-06
> BS07269.5prime
GAAGTTATCAGTCGACATGCACAAGGCCATTAAAAACAAATCCAGGCTCC
TCTGCGGACTCAAGAACTCCAAGGCGGATCTAACGACAGCCAAGTTTATA
CTATATTATGGACCCACGGTGGCAGATAGCGATATCTATGACCTAACCGA
TTTCCAGAGTCTTCTGGAGGACGAGCACTTGGATTTGGGCAAGAACACCG
TGCTCTATTTGCACGGCTACTTGGAAGATCCGGATGTGGAGAGCATTCAC
GTCATAGCCGAGGCCTATCTGGAGCGAAAGGATACCAATCTTATCGTCCT
AGACTGGGGTGAACTGGCCGATGGCAATTACATGTTCGATGCCTTCCCGA
ACCTCAAACAGCTGGGCCCAGAGTTGGCCAAGGTCCTGCTCAAAATGTTC
GACCATGGCCTGGACATTGAGAAGTTCCACATTGTCGGACACTCGATGGG
CGGCCAGCTGGCCGGACTCCTCGGCCGAGAGATTACTAAACGCACCAAGG
GTGTCAGAAAGATAAAAAGAATTTCCGCTTTGGATCCCGCATTTCCGCTC
TTCTATCCGGGCACGCACCTGTCTGCCAATGATGCGGAGTTCGTCGACGT
GATACACACGGACGCCTGGCTGTACGGAGCTCCGACGAGCACGGGCACGG
CGGATTTCTGGCCAAATGGTGGATACAGCCTGCAGCCTGGCTGTCCCAAG
CGAAACTACAAGATGCTCAGCGACAACGATCTGTCCAGTCATCGGAGGAG
CTGGTGGTTCTGGGCCGAGAGCGTTTCGGATCGATATCCCATTGGATTCG
ATGCTGTGCCCGCCAAGAAATGGTCGGAACTCAAGCAGAACAAAATAGTA
GAGAATTGC
BS07269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-PA | 1023 | CG17292-RA | 1..843 | 17..859 | 4165 | 99.7 | Plus |
CG17292-PB | 1023 | CG17292-RB | 1..843 | 17..859 | 4165 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-RD | 1473 | CG17292-RD | 327..1171 | 15..859 | 4195 | 99.8 | Plus |
CG17292-RC | 2003 | CG17292-RC | 857..1701 | 15..859 | 4195 | 99.8 | Plus |
CG17292-RB | 1397 | CG17292-RB | 251..1095 | 15..859 | 4195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8372880..8373288 | 111..519 | 2045 | 100 | Plus |
2L | 23513712 | 2L | 8373538..8373879 | 518..859 | 1680 | 99.4 | Plus |
2L | 23513712 | 2L | 8372687..8372753 | 45..111 | 335 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 04:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2792..2845 | 14..67 | 117 | 68.5 | Plus |
BS07269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:47 Download gff for
BS07269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-PB | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:05 Download gff for
BS07269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-PB | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:21 Download gff for
BS07269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RA | 103..952 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:05 Download gff for
BS07269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 246..1095 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:05 Download gff for
BS07269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8372591..8372625 | 9..44 | 91 | -> | Plus |
2L | 8372687..8372753 | 45..111 | 100 | -> | Plus |
2L | 8372881..8373288 | 112..519 | 100 | -> | Plus |
2L | 8373540..8373879 | 520..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:21 Download gff for
BS07269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8373540..8373879 | 520..859 | 99 | | Plus |
arm_2L | 8372591..8372625 | 9..44 | 91 | -> | Plus |
arm_2L | 8372687..8372753 | 45..111 | 100 | -> | Plus |
arm_2L | 8372881..8373288 | 112..519 | 100 | -> | Plus |
BS07269.complete Sequence
1055 bp (1055 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635797
> BS07269.complete
GAAGTTATCAGTCGACATGCACAAGGCCATTAAAAACAAATCCAGGCTCC
TCTGCGGACTCAAGAACTCCAAGGCGGATCTAACGACAGCCAAGTTTATA
CTATATTATGGACCCACGGTGGCAGATAGCGATATCTATGACCTAACCGA
TTTCCAGAGTCTTCTGGAGGACGAGCACTTGGATTTGGGCAAGAACACCG
TGCTCTATTTGCACGGCTACTTGGAAGATCCGGATGTGGAGAGCATTCAC
GTCATAGCCGAGGCCTATCTGGAGCGAAAGGATACCAATCTTATCGTCCT
AGACTGGGGTGAACTGGCCGATGGCAATTACATGTTCGATGCCTTCCCGA
ACCTCAAACAGCTGGGCCCAGAGTTGGCCAAGGTCCTGCTCAAAATGTTC
GACCATGGCCTGGACATTGAGAAGTTCCACATTGTCGGACACTCGATGGG
CGGCCAGCTGGCCGGACTCCTCGGCCGAGAGATTACTAAACGCACCAAGG
GTGTCAGAAAGATAAAAAGAATTTCCGCTTTGGATCCCGCATTTCCGCTC
TTCTATCCGGGCACGCACCTGTCTGCCAATGATGCGGAGTTCGTCGACGT
GATACACACGGACGCCTGGCTGTACGGAGCTCCGACGAGCACGGGCACGG
CGGATTTCTGGCCAAATGGTGGATACAGCCTGCAGCCTGGCTGTCCCAAG
CGAAACTACAAGATGCTCAGCGACAACGATCTGTCCAGTCATCGGAGGAG
CTGGTGGTTCTGGGCCGAGAGCGTTTCGGATCGATATCCCATTGGATTCG
ATGCTGTGCCCGCCAAGAAATGGTCGGACTTCAAGCAGAACAAAATAGTA
GAGAATTGCCCGCCCGTGGTGATGGGTCATCATTGTCCCACGACAATTCA
TGGCGACTTTTACTTACAAACCAACGGACATACACCTTTTGCTCGAGGCA
AGGAGGGCACTGTCTACGTTGACCCCAAGGATCTGCTGGGAAATACCCAC
AGCATCACCTGTGACTGCCCGTCGGAGAAAACGAATTAAAAGCTTTCTAG
ACCAT
BS07269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-RD | 1023 | CG17292-PD | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG17292-RC | 1023 | CG17292-PC | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG17292-RB | 1023 | CG17292-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-RD | 1473 | CG17292-RD | 327..1351 | 15..1039 | 5125 | 100 | Plus |
CG17292-RC | 2003 | CG17292-RC | 857..1881 | 15..1039 | 5125 | 100 | Plus |
CG17292-RB | 1397 | CG17292-RB | 251..1275 | 15..1039 | 5125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8372880..8373288 | 111..519 | 2045 | 100 | Plus |
2L | 23513712 | 2L | 8373538..8373914 | 518..894 | 1885 | 100 | Plus |
2L | 23513712 | 2L | 8373984..8374128 | 895..1039 | 725 | 100 | Plus |
2L | 23513712 | 2L | 8372687..8372753 | 45..111 | 335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2792..2845 | 14..67 | 117 | 68.5 | Plus |
BS07269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:56 Download gff for
BS07269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 1..1023 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:16 Download gff for
BS07269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 263..1304 | 9..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:34 Download gff for
BS07269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RA | 110..1130 | 17..1037 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:56 Download gff for
BS07269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 263..1304 | 9..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:46 Download gff for
BS07269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 253..1273 | 17..1037 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:46 Download gff for
BS07269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8373984..8374126 | 895..1037 | 100 | | Plus |
2L | 8372598..8372625 | 17..44 | 100 | -> | Plus |
2L | 8372687..8372753 | 45..111 | 100 | -> | Plus |
2L | 8372881..8373288 | 112..519 | 100 | -> | Plus |
2L | 8373540..8373914 | 520..894 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:34 Download gff for
BS07269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8372598..8372625 | 17..44 | 100 | -> | Plus |
arm_2L | 8372687..8372753 | 45..111 | 100 | -> | Plus |
arm_2L | 8372881..8373288 | 112..519 | 100 | -> | Plus |
arm_2L | 8373540..8373914 | 520..894 | 100 | -> | Plus |
arm_2L | 8373984..8374126 | 895..1037 | 100 | | Plus |
BS07269.pep Sequence
Translation from 16 to 1038
> BS07269.pep
MHKAIKNKSRLLCGLKNSKADLTTAKFILYYGPTVADSDIYDLTDFQSLL
EDEHLDLGKNTVLYLHGYLEDPDVESIHVIAEAYLERKDTNLIVLDWGEL
ADGNYMFDAFPNLKQLGPELAKVLLKMFDHGLDIEKFHIVGHSMGGQLAG
LLGREITKRTKGVRKIKRISALDPAFPLFYPGTHLSANDAEFVDVIHTDA
WLYGAPTSTGTADFWPNGGYSLQPGCPKRNYKMLSDNDLSSHRRSWWFWA
ESVSDRYPIGFDAVPAKKWSDFKQNKIVENCPPVVMGHHCPTTIHGDFYL
QTNGHTPFARGKEGTVYVDPKDLLGNTHSITCDCPSEKTN*
BS07269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-PD | 340 | CG17292-PD | 1..340 | 1..340 | 1854 | 100 | Plus |
CG17292-PC | 340 | CG17292-PC | 1..340 | 1..340 | 1854 | 100 | Plus |
CG17292-PB | 340 | CG17292-PB | 1..340 | 1..340 | 1854 | 100 | Plus |
CG17292-PA | 340 | CG17292-PA | 1..340 | 1..340 | 1854 | 100 | Plus |
CG6472-PB | 389 | CG6472-PB | 45..337 | 26..318 | 397 | 35.3 | Plus |