Clone BS07269 Report

Search the DGRC for BS07269

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG17292-RA
Protein status:BS07269.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07269.3prime Sequence

942 bp (788 high quality bases) assembled on 2006-01-06

> BS07269.3prime
ATGGTCTAGAAAGCTTTTAATTCGTTTTCTCCGACGGGCAGTCACAGGTG
ATGCTGTGGGTATTTCCCAGCAGATCCTTGGGGTCAACGTAGACAGTGCC
CTCCTTGCCTCGAGCAAAAGGTGTATGTCCGTTGGTTTGTAAGTAAAAGT
CGCCATGAATTGTCGTGGGACAATGATGACCCATCACCACGGGCGGGCAA
TTCTCTACTATTTTGTTCTGCTTGAAGTCCGACCATTTCTTGGCGGGCAC
AGCATCGAATCCAATGGGATATCGATCCGAAACGCTCTCGGCCCAGAACC
ACCAGCTCCTCCGATGACTGGACAGATCGTTGTCGCTGAGCATCTTGTAG
TTTCGCTTGGGACAGCCAGGCTGCAGGCTGTATCCACCATTTGGCCAGAA
ATCCGCCGTGCCCGTGCTCGTCGGAGCTCCGTACAGCCAGGCGTCCGTGT
GTATCACGTCGACGAACTCCGCATCATTGGCAGACAGGTGCGTGCCCGGA
TAGAAGAGCGGAAATGCGGGATCCAAAGCGGAAATTCTTTTTATCTTTCT
GACACCCTTGGTGCGTTTAGTAATCTCTCGGCCGAGGAGTCCGGCCAGCT
GGCCGCCCATCGAGTGTCCGACAATGTGGAACTTCTCAATGTCCAGGCCA
TGGTCGAACATTTTGAGCAGGACCTTGGCCAACTCTGGGCCCAGCTGTTT
GAGGTTCGGGAAGGCATCGAACATGTAATTGCCATCGGCCAGTTCACCCC
AGTCTAGGACGATAAGATTGGTATCCTTTCGCTCCAGATAGGCCTCGGCT
ATGACGTGAATGCTCTCCACATCCGGATCTTCCAAGTAGCCGTGCAAATA
GAGCACGGTGTTCTTGCCCAAATCCAAGTGCTCGTCCTCCAGAAGACTCT
GGAAATCGGTTAGGTCATAGATATCGCTATCTGCCACCGTGG

BS07269.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-PA 1023 CG17292-RA 98..1023 942..17 4630 100 Minus
CG17292-PB 1023 CG17292-RB 98..1023 942..17 4630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-RD 1473 CG17292-RD 426..1351 942..17 4630 100 Minus
CG17292-RC 2003 CG17292-RC 956..1881 942..17 4630 100 Minus
CG17292-RB 1397 CG17292-RB 350..1275 942..17 4630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8372883..8373288 942..537 2030 100 Minus
2L 23513712 2L 8373538..8373914 538..162 1885 100 Minus
2L 23513712 2L 8373984..8374128 161..17 725 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:38:48 has no hits.

BS07269.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:46 Download gff for BS07269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-PB 98..1023 17..942 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:04 Download gff for BS07269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-PB 98..1023 17..942 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:30:43 Download gff for BS07269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-RA 207..1144 7..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:31 Download gff for BS07269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 350..1287 7..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:31 Download gff for BS07269.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8372883..8373288 537..942 100 -> Minus
2L 8373540..8373914 162..536 100 -> Minus
2L 8373984..8374140 7..161 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:30:43 Download gff for BS07269.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8372883..8373288 537..942 100 -> Minus
arm_2L 8373540..8373914 162..536 100 -> Minus
arm_2L 8373984..8374140 7..161 97   Minus

BS07269.5prime Sequence

859 bp (824 high quality bases) assembled on 2006-01-06

> BS07269.5prime
GAAGTTATCAGTCGACATGCACAAGGCCATTAAAAACAAATCCAGGCTCC
TCTGCGGACTCAAGAACTCCAAGGCGGATCTAACGACAGCCAAGTTTATA
CTATATTATGGACCCACGGTGGCAGATAGCGATATCTATGACCTAACCGA
TTTCCAGAGTCTTCTGGAGGACGAGCACTTGGATTTGGGCAAGAACACCG
TGCTCTATTTGCACGGCTACTTGGAAGATCCGGATGTGGAGAGCATTCAC
GTCATAGCCGAGGCCTATCTGGAGCGAAAGGATACCAATCTTATCGTCCT
AGACTGGGGTGAACTGGCCGATGGCAATTACATGTTCGATGCCTTCCCGA
ACCTCAAACAGCTGGGCCCAGAGTTGGCCAAGGTCCTGCTCAAAATGTTC
GACCATGGCCTGGACATTGAGAAGTTCCACATTGTCGGACACTCGATGGG
CGGCCAGCTGGCCGGACTCCTCGGCCGAGAGATTACTAAACGCACCAAGG
GTGTCAGAAAGATAAAAAGAATTTCCGCTTTGGATCCCGCATTTCCGCTC
TTCTATCCGGGCACGCACCTGTCTGCCAATGATGCGGAGTTCGTCGACGT
GATACACACGGACGCCTGGCTGTACGGAGCTCCGACGAGCACGGGCACGG
CGGATTTCTGGCCAAATGGTGGATACAGCCTGCAGCCTGGCTGTCCCAAG
CGAAACTACAAGATGCTCAGCGACAACGATCTGTCCAGTCATCGGAGGAG
CTGGTGGTTCTGGGCCGAGAGCGTTTCGGATCGATATCCCATTGGATTCG
ATGCTGTGCCCGCCAAGAAATGGTCGGAACTCAAGCAGAACAAAATAGTA
GAGAATTGC

BS07269.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-PA 1023 CG17292-RA 1..843 17..859 4165 99.7 Plus
CG17292-PB 1023 CG17292-RB 1..843 17..859 4165 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-RD 1473 CG17292-RD 327..1171 15..859 4195 99.8 Plus
CG17292-RC 2003 CG17292-RC 857..1701 15..859 4195 99.8 Plus
CG17292-RB 1397 CG17292-RB 251..1095 15..859 4195 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8372880..8373288 111..519 2045 100 Plus
2L 23513712 2L 8373538..8373879 518..859 1680 99.4 Plus
2L 23513712 2L 8372687..8372753 45..111 335 100 Plus
Blast to na_te.dros performed 2015-02-10 04:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2792..2845 14..67 117 68.5 Plus

BS07269.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:47 Download gff for BS07269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-PB 1..843 17..859 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:05 Download gff for BS07269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-PB 1..843 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:21 Download gff for BS07269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-RA 103..952 9..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:05 Download gff for BS07269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 246..1095 9..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:05 Download gff for BS07269.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8372591..8372625 9..44 91 -> Plus
2L 8372687..8372753 45..111 100 -> Plus
2L 8372881..8373288 112..519 100 -> Plus
2L 8373540..8373879 520..859 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:21 Download gff for BS07269.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8373540..8373879 520..859 99   Plus
arm_2L 8372591..8372625 9..44 91 -> Plus
arm_2L 8372687..8372753 45..111 100 -> Plus
arm_2L 8372881..8373288 112..519 100 -> Plus

BS07269.complete Sequence

1055 bp (1055 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635797

> BS07269.complete
GAAGTTATCAGTCGACATGCACAAGGCCATTAAAAACAAATCCAGGCTCC
TCTGCGGACTCAAGAACTCCAAGGCGGATCTAACGACAGCCAAGTTTATA
CTATATTATGGACCCACGGTGGCAGATAGCGATATCTATGACCTAACCGA
TTTCCAGAGTCTTCTGGAGGACGAGCACTTGGATTTGGGCAAGAACACCG
TGCTCTATTTGCACGGCTACTTGGAAGATCCGGATGTGGAGAGCATTCAC
GTCATAGCCGAGGCCTATCTGGAGCGAAAGGATACCAATCTTATCGTCCT
AGACTGGGGTGAACTGGCCGATGGCAATTACATGTTCGATGCCTTCCCGA
ACCTCAAACAGCTGGGCCCAGAGTTGGCCAAGGTCCTGCTCAAAATGTTC
GACCATGGCCTGGACATTGAGAAGTTCCACATTGTCGGACACTCGATGGG
CGGCCAGCTGGCCGGACTCCTCGGCCGAGAGATTACTAAACGCACCAAGG
GTGTCAGAAAGATAAAAAGAATTTCCGCTTTGGATCCCGCATTTCCGCTC
TTCTATCCGGGCACGCACCTGTCTGCCAATGATGCGGAGTTCGTCGACGT
GATACACACGGACGCCTGGCTGTACGGAGCTCCGACGAGCACGGGCACGG
CGGATTTCTGGCCAAATGGTGGATACAGCCTGCAGCCTGGCTGTCCCAAG
CGAAACTACAAGATGCTCAGCGACAACGATCTGTCCAGTCATCGGAGGAG
CTGGTGGTTCTGGGCCGAGAGCGTTTCGGATCGATATCCCATTGGATTCG
ATGCTGTGCCCGCCAAGAAATGGTCGGACTTCAAGCAGAACAAAATAGTA
GAGAATTGCCCGCCCGTGGTGATGGGTCATCATTGTCCCACGACAATTCA
TGGCGACTTTTACTTACAAACCAACGGACATACACCTTTTGCTCGAGGCA
AGGAGGGCACTGTCTACGTTGACCCCAAGGATCTGCTGGGAAATACCCAC
AGCATCACCTGTGACTGCCCGTCGGAGAAAACGAATTAAAAGCTTTCTAG
ACCAT

BS07269.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-RD 1023 CG17292-PD 1..1023 17..1039 5115 100 Plus
CG17292-RC 1023 CG17292-PC 1..1023 17..1039 5115 100 Plus
CG17292-RB 1023 CG17292-PB 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-RD 1473 CG17292-RD 327..1351 15..1039 5125 100 Plus
CG17292-RC 2003 CG17292-RC 857..1881 15..1039 5125 100 Plus
CG17292-RB 1397 CG17292-RB 251..1275 15..1039 5125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8372880..8373288 111..519 2045 100 Plus
2L 23513712 2L 8373538..8373914 518..894 1885 100 Plus
2L 23513712 2L 8373984..8374128 895..1039 725 100 Plus
2L 23513712 2L 8372687..8372753 45..111 335 100 Plus
Blast to na_te.dros performed 2014-11-27 07:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2792..2845 14..67 117 68.5 Plus

BS07269.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:56 Download gff for BS07269.complete
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 1..1023 17..1039 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:16 Download gff for BS07269.complete
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 263..1304 9..1049 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:34 Download gff for BS07269.complete
Subject Subject Range Query Range Percent Splice Strand
CG17292-RA 110..1130 17..1037 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:56 Download gff for BS07269.complete
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 263..1304 9..1049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:46 Download gff for BS07269.complete
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 253..1273 17..1037 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:46 Download gff for BS07269.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8373984..8374126 895..1037 100   Plus
2L 8372598..8372625 17..44 100 -> Plus
2L 8372687..8372753 45..111 100 -> Plus
2L 8372881..8373288 112..519 100 -> Plus
2L 8373540..8373914 520..894 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:34 Download gff for BS07269.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8372598..8372625 17..44 100 -> Plus
arm_2L 8372687..8372753 45..111 100 -> Plus
arm_2L 8372881..8373288 112..519 100 -> Plus
arm_2L 8373540..8373914 520..894 100 -> Plus
arm_2L 8373984..8374126 895..1037 100   Plus

BS07269.pep Sequence

Translation from 16 to 1038

> BS07269.pep
MHKAIKNKSRLLCGLKNSKADLTTAKFILYYGPTVADSDIYDLTDFQSLL
EDEHLDLGKNTVLYLHGYLEDPDVESIHVIAEAYLERKDTNLIVLDWGEL
ADGNYMFDAFPNLKQLGPELAKVLLKMFDHGLDIEKFHIVGHSMGGQLAG
LLGREITKRTKGVRKIKRISALDPAFPLFYPGTHLSANDAEFVDVIHTDA
WLYGAPTSTGTADFWPNGGYSLQPGCPKRNYKMLSDNDLSSHRRSWWFWA
ESVSDRYPIGFDAVPAKKWSDFKQNKIVENCPPVVMGHHCPTTIHGDFYL
QTNGHTPFARGKEGTVYVDPKDLLGNTHSITCDCPSEKTN*

BS07269.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-PD 340 CG17292-PD 1..340 1..340 1854 100 Plus
CG17292-PC 340 CG17292-PC 1..340 1..340 1854 100 Plus
CG17292-PB 340 CG17292-PB 1..340 1..340 1854 100 Plus
CG17292-PA 340 CG17292-PA 1..340 1..340 1854 100 Plus
CG6472-PB 389 CG6472-PB 45..337 26..318 397 35.3 Plus