Clone BS07274 Report

Search the DGRC for BS07274

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG10082-RB
Protein status:BS07274.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07274.3prime Sequence

910 bp (881 high quality bases) assembled on 2006-01-06

> BS07274.3prime
ATGGTCTAGAAAGCTTTTAGGCGCGTTCCTCGGCCACAATTTCGTTGAGC
AGGCGGTTGAGGCTATCCAGACCGGTAAGGAATCCCCCGTCGGGTCCATG
GTGCACCGGAGCTGCCGCCGGAGTGGGTAGCATGGTGCCATTGCGCGGCA
CGAATGCCGTGTGGGCAAAGTCGATGAGCCGGACGTCCACGAAGCACTGG
TTATCATCAGTGGGCGGTGCCGACATGTCCAGCGACTTTGAGCTTTGCTG
CAGAAGTGCATTGCGACGCTGCTCATTGTTATTATCCAGGAGCAGGCCCG
ACAGCAGAGATTGCTGGTTTGAGATACTCTCACAGCTGCGCAGTTGTGGG
GCTGCCTTAGCTGGCGAGGATACGGCCGAAACGGGTGTCGAAGTGATCGT
CGACTTCTTCGCTTCTCGCAAATCCGATTCCCCCAGGCTCGCAGACTGCT
GATCATCATCATTGCATCGTAGCCGCTTCACTGCACCCTTGACCGATTTC
AGAGAGGAGGCGCTGGATGAAGCGGGCGAAACCAGTGAACGGACTGTGGT
GCCGCCATTGGAAACGCTCGAGTTTCCGGCAGTGAGTGGCGGGGAGGACG
CAGAGTCGGCAGCTGTGGCGGCGTCAAAAGATTGCTGAGACTTATATCGC
TTAAACATAGCCTCCGTTGGCCCAATGATACTGCTTTCGTAATCTGAACT
TGCGTCATCACTGCTGTTATTGCATGTCTGCCGCCCACTGGCCACAGCCT
TTATCTGCTCGGATAATCCGGAGAAGTCGTCGCTGCTGTTGCTGCTATAG
TTCATCCATGAGTCACCGGAATGTGGCGATGAAGTCGTCACGCTGGGCAG
CGCTGGCTCTGGGTCCAGAAATACTGTCTCTTCGGAGATTGGATGAATGC
TCCCTGGCCC

BS07274.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10082-PA 2709 CG10082-RA 1833..2709 893..17 4385 100 Minus
CG10082-PB 2019 CG10082-RB 1143..2019 893..17 4385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10082-RB 2795 CG10082-RB 1546..2440 910..17 4450 99.9 Minus
CG10082-RA 4001 CG10082-RA 2245..3139 910..17 4450 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21656367..21657073 723..17 3535 100 Minus
2R 25286936 2R 21656120..21656308 910..723 895 99.5 Minus
Blast to na_te.dros performed 2015-02-06 11:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2902 802..679 114 63.1 Minus

BS07274.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:55 Download gff for BS07274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10082-PB 1125..2019 17..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:16 Download gff for BS07274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10082-PB 1125..2019 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:39:44 Download gff for BS07274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10082-RA 2245..3147 7..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:34 Download gff for BS07274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10082-RA 2245..3147 7..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:34 Download gff for BS07274.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21656120..21656307 724..910 99 -> Minus
2R 21656367..21657081 7..723 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:39:44 Download gff for BS07274.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17543625..17543812 724..910 99 -> Minus
arm_2R 17543872..17544586 7..723 99   Minus

BS07274.5prime Sequence

929 bp (858 high quality bases) assembled on 2006-01-06

> BS07274.5prime
GAAGTTATCAGTCGACATGGGCGTCATGCAGGCCACCACCATGGGCGGAG
CCAAGCTGGACAAGCGCTACTCGCCTAGTTTCCGGGATGACGCGGCCGCC
GTTCCCGTTCGCAAGATGAGCGCCTCCAAGAGGAAGCGGGATGAGGTGCT
GAGAATGAAGGTGCACAAGAATGGACAGGCCGCTGAAGTGATCAAAAGCA
TCTCACAACTGGACAACACCAATAAGCAATACTTCCTTATGCTCGAGAAC
ATCACATCGCAGTTCCGCAATCCCTGCATCCTGGACCTCAAGATGGGCAC
TCGTCAGCATGGAGATGATGCGTCGGCGGAGAAGCGCTCCAAGCAGATGG
CCAAGTGCGCGGCCAGCACATCCGGATCGCTCGGCGTTCGCTTGTGCGGA
ATGCAGACCTACCTGGCCGATCTGGAACAGTATGCCAAGCGTGACAAGTA
CTGGGGCCGCGAGCTTAACGAGGGCGGATTCAAGACTGCGTTGCACGATT
TCTTTCACAATGGCTACCGCCTGCGCATCCGTGTCATCCGCAAGATTCTG
CAGCGCCTGCTCCAATTACGAAGGGTGATTGAAAAGCAGTCGAGCTACAG
ATTCTACTCTTGCTCACTGCTCATTGTGTACGAGGGCTTTGAGGAGAATC
CAATGGCCCCCCCTCCCTCGATGAGTCAGGATGAGTGGCCAGAGGCGCCC
AGGTCGGCCACTGTGCCCGGCACTGTCTTCGATTATCATCCGGAGAACAG
CATAGACGAGGACGATCTGGAGGATGACGACGAGGCAGGCAACGAGGCTG
GCGATGAGCTGGAGGCGCACGACACCGACGATGATCTGCATCTGGTGGCC
GCCGACAGTGGCAACGCTTCGGCGACGAACAGCAGCACAGGAGGAGATGC
CTGCAACTACGATGCAGATGCTTCCCACG

BS07274.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10082-PB 2019 CG10082-RB 1..905 17..921 4525 100 Plus
CG10082-PA 2709 CG10082-RA 694..1595 20..921 4510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10082-RB 2795 CG10082-RB 422..1334 17..929 4535 99.8 Plus
CG10082-RA 4001 CG10082-RA 1124..2033 20..929 4520 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21655121..21655502 231..612 1910 100 Plus
2R 25286936 2R 21655591..21655908 612..929 1560 99.4 Plus
2R 25286936 2R 21654774..21654907 20..153 670 100 Plus
2R 25286936 2R 21654968..21655046 152..230 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:39:10 has no hits.

BS07274.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:56 Download gff for BS07274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10082-PB 1..913 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:17 Download gff for BS07274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10082-PB 1..913 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:36:50 Download gff for BS07274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 418..1334 12..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:03:02 Download gff for BS07274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 418..1334 12..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:03:02 Download gff for BS07274.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21655592..21655908 613..929 99   Plus
2R 21654770..21654907 12..153 97 -> Plus
2R 21654970..21655046 154..230 100 -> Plus
2R 21655121..21655502 231..612 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:36:50 Download gff for BS07274.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17542275..17542412 12..153 97 -> Plus
arm_2R 17542475..17542551 154..230 100 -> Plus
arm_2R 17542626..17543007 231..612 100 -> Plus
arm_2R 17543097..17543413 613..929 99   Plus

BS07274.complete Sequence

2051 bp assembled on 2008-01-02

GenBank Submission: FJ635798

> BS07274.complete
GAAGTTATCAGTCGACATGGGCGTCATGCAGGCCACCACCATGGGCGGAG
CCAAGCTGGACAAGCGCTACTCGCCTAGTTTCCGGGATGACGCGGCCGCC
GTTCCCGTTCGCAAGATGAGCGCCTCCAAGAGGAAGCGGGATGAGGTGCT
GAGAATGAAGGTGCACAAGAATGGACAGGCCGCTGAAGTGATCAAAAGCA
TCTCACAACTGGACAACACCAATAAGCAATACTTCCTTATGCTCGAGAAC
ATCACATCGCAGTTCCGCAATCCCTGCATCCTGGACCTCAAGATGGGCAC
TCGTCAGCATGGAGATGATGCGTCGGCGGAGAAGCGCTCCAAGCAGATGG
CCAAGTGCGCGGCCAGCACATCCGGATCGCTCGGCGTTCGCTTGTGCGGA
ATGCAGACCTACCTGGCCGATCTGGAACAGTATGCCAAGCGTGACAAGTA
CTGGGGCCGCGAGCTTAACGAGGGCGGATTCAAGACTGCGTTGCACGATT
TCTTTCACAATGGCTACCGCCTGCGCATCCGTGTCATCCGCAAGATTCTG
CAGCGCCTGCTCCAATTACGAAGGGTGATTGAAAAGCAGTCGAGCTACAG
ATTCTACTCTTGCTCACTGCTCATTGTGTACGAGGGCTTTGAGGAGAATC
CAATGGCCCCCCCTCCCTCGATGAGTCAGGATGAGTGGCCAGAGGCGCCC
AGGTCGGCCACTGTGCCCGGCACTGTCTTCGATTATCATCCGGAGAACAG
CATAGACGAGGACGATCTGGAGGATGACGACGAGGCAGGCAACGAGGCTG
GCGATGAGCTGGAGGCGCACGACACCGACGATGATCTGCATCTGGTGGCC
GCCGACAGTGGCAACGCTTCGGCGACGAACAGCAGCACAGGAGGAGATGC
CTGCAACTACGATGCAGATGCCTCCAACGATTCTAACTCATTGCTGAACC
TGGCTACCAGACGTCACCTGCACAAGCGTGGATTTGCAGAGGCAGCGGCG
CGAGGAGTTAAGCAGACGGCATCCCACAATACCACTACCGATGAGGAGGA
GGAGGATGAGCACCCGGCTATGCCACCGCCTCGGACTTGTGGTGTTATGG
CCGCCAAAGCGGCAGCCGCTGCCGCTGGCCTGGCCGGAAAGGGCCAGGGA
GCATTCATTCCAATCTCCGAAGAGACAGTATTTCTGGACCCAGAGCCAGC
GCTGCCCAGCGTGACGACTTCATCGCCACATTCCGGTGACTCATGGATGA
ACTATAGCAGCAACAGCAGCGACGACTTCTCCGGATTATCCGAGCAGATA
AAGGCTGTGGCCAGTGGGCGGCAGACATGCAATAACAGCAGTGATGACGC
AAGTTCAGATTACGAAAGCAGTATCATTGGGCCAACGGAGGCTATGTTTA
AGCGATATAAGTCTCAGCAATCTTTTGACGCCGCCACAGCTGCCGACTCT
GCGTCCTCCCCGCCACTCACTGCCGGAAACTCGAGCGTTTCCAATGGCGG
CACCACAGTCCGTTCACTGGTTTCGCCCGCTTCATCCAGCGCCTCCTCTC
TGAAATCGGTCAAGGGTGCAGTGAAGCGGCTACGATGCAATGATGATGAT
CAGCAGTCTGCGAGCCTGGGGGAATCGGATTTGCGAGAAGCGAAGAAGTC
GACGATCACTTCGACACCCGTTTCGGCCGTATCCTCGCCAGCTAAGGCAG
CCCCACAACTGCGCAGCTGTGAGAGTATCTCAAACCAGCAATCTCTGCTG
TCGGGCCTGCTCCTGGATAATAACAATGAGCAGCGTCGCAATGCACTTCT
GCAGCAAAGCTCAAAGTCGCTGGACATGTCGGCACCGCCCACTGATGATA
ACCAGTGCTTCGTGGACGTCCGGCTCATCGACTTTGCCCACACGGCATTC
GTGCCGCGCAATGGCACCATGCTACCCACTCCGGCGGCAGCTCCGGTGCA
CCATGGACCCGACGGGGGATTCCTTACCGGTCTGGATAGCCTCAACCGCC
TGCTCAACGAAATTGTGGCCGAGGAACGCGCCTAAAAGCTTTCTAGACCA
T

BS07274.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10082-RB 2019 CG10082-PB 1..2019 17..2035 10095 100 Plus
CG10082-RA 2709 CG10082-PA 694..2709 20..2035 10080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10082-RB 2795 CG10082-RB 422..2440 17..2035 10095 100 Plus
CG10082-RA 4001 CG10082-RA 1124..3139 20..2035 10080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21655591..21656308 612..1329 3590 100 Plus
2R 25286936 2R 21656367..21657073 1329..2035 3535 100 Plus
2R 25286936 2R 21655121..21655502 231..612 1910 100 Plus
2R 25286936 2R 21654774..21654907 20..153 670 100 Plus
2R 25286936 2R 21654968..21655046 152..230 395 100 Plus
Blast to na_te.dros performed 2014-11-27 16:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2902 1250..1373 114 63.1 Plus

BS07274.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:11 Download gff for BS07274.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2019 17..2035 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:08 Download gff for BS07274.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 422..2438 17..2033 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:05 Download gff for BS07274.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 422..2438 17..2033 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:11 Download gff for BS07274.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 418..2448 12..2045 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:33 Download gff for BS07274.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 422..2438 17..2033 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:33 Download gff for BS07274.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21654773..21654907 17..153 98 -> Plus
2R 21654970..21655046 154..230 100 -> Plus
2R 21655121..21655502 231..612 100 -> Plus
2R 21655592..21656307 613..1328 100 -> Plus
2R 21656367..21657071 1329..2033 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:05 Download gff for BS07274.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17542278..17542412 17..153 98 -> Plus
arm_2R 17542475..17542551 154..230 100 -> Plus
arm_2R 17542626..17543007 231..612 100 -> Plus
arm_2R 17543097..17543812 613..1328 100 -> Plus
arm_2R 17543872..17544576 1329..2033 100   Plus

BS07274.pep Sequence

Translation from 16 to 2034

> BS07274.pep
MGVMQATTMGGAKLDKRYSPSFRDDAAAVPVRKMSASKRKRDEVLRMKVH
KNGQAAEVIKSISQLDNTNKQYFLMLENITSQFRNPCILDLKMGTRQHGD
DASAEKRSKQMAKCAASTSGSLGVRLCGMQTYLADLEQYAKRDKYWGREL
NEGGFKTALHDFFHNGYRLRIRVIRKILQRLLQLRRVIEKQSSYRFYSCS
LLIVYEGFEENPMAPPPSMSQDEWPEAPRSATVPGTVFDYHPENSIDEDD
LEDDDEAGNEAGDELEAHDTDDDLHLVAADSGNASATNSSTGGDACNYDA
DASNDSNSLLNLATRRHLHKRGFAEAAARGVKQTASHNTTTDEEEEDEHP
AMPPPRTCGVMAAKAAAAAAGLAGKGQGAFIPISEETVFLDPEPALPSVT
TSSPHSGDSWMNYSSNSSDDFSGLSEQIKAVASGRQTCNNSSDDASSDYE
SSIIGPTEAMFKRYKSQQSFDAATAADSASSPPLTAGNSSVSNGGTTVRS
LVSPASSSASSLKSVKGAVKRLRCNDDDQQSASLGESDLREAKKSTITST
PVSAVSSPAKAAPQLRSCESISNQQSLLSGLLLDNNNEQRRNALLQQSSK
SLDMSAPPTDDNQCFVDVRLIDFAHTAFVPRNGTMLPTPAAAPVHHGPDG
GFLTGLDSLNRLLNEIVAEERA*

BS07274.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10082-PB 672 CG10082-PB 1..672 1..672 3446 100 Plus
CG10082-PA 902 CG10082-PA 232..902 2..672 3441 100 Plus
Ipk2-PA 309 CG13688-PA 94..252 67..217 168 30.1 Plus