Clone Sequence Records
BS07274.3prime Sequence
910 bp (881 high quality bases) assembled on 2006-01-06
> BS07274.3prime
ATGGTCTAGAAAGCTTTTAGGCGCGTTCCTCGGCCACAATTTCGTTGAGC
AGGCGGTTGAGGCTATCCAGACCGGTAAGGAATCCCCCGTCGGGTCCATG
GTGCACCGGAGCTGCCGCCGGAGTGGGTAGCATGGTGCCATTGCGCGGCA
CGAATGCCGTGTGGGCAAAGTCGATGAGCCGGACGTCCACGAAGCACTGG
TTATCATCAGTGGGCGGTGCCGACATGTCCAGCGACTTTGAGCTTTGCTG
CAGAAGTGCATTGCGACGCTGCTCATTGTTATTATCCAGGAGCAGGCCCG
ACAGCAGAGATTGCTGGTTTGAGATACTCTCACAGCTGCGCAGTTGTGGG
GCTGCCTTAGCTGGCGAGGATACGGCCGAAACGGGTGTCGAAGTGATCGT
CGACTTCTTCGCTTCTCGCAAATCCGATTCCCCCAGGCTCGCAGACTGCT
GATCATCATCATTGCATCGTAGCCGCTTCACTGCACCCTTGACCGATTTC
AGAGAGGAGGCGCTGGATGAAGCGGGCGAAACCAGTGAACGGACTGTGGT
GCCGCCATTGGAAACGCTCGAGTTTCCGGCAGTGAGTGGCGGGGAGGACG
CAGAGTCGGCAGCTGTGGCGGCGTCAAAAGATTGCTGAGACTTATATCGC
TTAAACATAGCCTCCGTTGGCCCAATGATACTGCTTTCGTAATCTGAACT
TGCGTCATCACTGCTGTTATTGCATGTCTGCCGCCCACTGGCCACAGCCT
TTATCTGCTCGGATAATCCGGAGAAGTCGTCGCTGCTGTTGCTGCTATAG
TTCATCCATGAGTCACCGGAATGTGGCGATGAAGTCGTCACGCTGGGCAG
CGCTGGCTCTGGGTCCAGAAATACTGTCTCTTCGGAGATTGGATGAATGC
TCCCTGGCCC
BS07274.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10082-PA | 2709 | CG10082-RA | 1833..2709 | 893..17 | 4385 | 100 | Minus |
CG10082-PB | 2019 | CG10082-RB | 1143..2019 | 893..17 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10082-RB | 2795 | CG10082-RB | 1546..2440 | 910..17 | 4450 | 99.9 | Minus |
CG10082-RA | 4001 | CG10082-RA | 2245..3139 | 910..17 | 4450 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21656367..21657073 | 723..17 | 3535 | 100 | Minus |
2R | 25286936 | 2R | 21656120..21656308 | 910..723 | 895 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-06 11:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2902 | 802..679 | 114 | 63.1 | Minus |
BS07274.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:55 Download gff for
BS07274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-PB | 1125..2019 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:16 Download gff for
BS07274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-PB | 1125..2019 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:39:44 Download gff for
BS07274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-RA | 2245..3147 | 7..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:34 Download gff for
BS07274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-RA | 2245..3147 | 7..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:34 Download gff for
BS07274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21656120..21656307 | 724..910 | 99 | -> | Minus |
2R | 21656367..21657081 | 7..723 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:39:44 Download gff for
BS07274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17543625..17543812 | 724..910 | 99 | -> | Minus |
arm_2R | 17543872..17544586 | 7..723 | 99 | | Minus |
BS07274.5prime Sequence
929 bp (858 high quality bases) assembled on 2006-01-06
> BS07274.5prime
GAAGTTATCAGTCGACATGGGCGTCATGCAGGCCACCACCATGGGCGGAG
CCAAGCTGGACAAGCGCTACTCGCCTAGTTTCCGGGATGACGCGGCCGCC
GTTCCCGTTCGCAAGATGAGCGCCTCCAAGAGGAAGCGGGATGAGGTGCT
GAGAATGAAGGTGCACAAGAATGGACAGGCCGCTGAAGTGATCAAAAGCA
TCTCACAACTGGACAACACCAATAAGCAATACTTCCTTATGCTCGAGAAC
ATCACATCGCAGTTCCGCAATCCCTGCATCCTGGACCTCAAGATGGGCAC
TCGTCAGCATGGAGATGATGCGTCGGCGGAGAAGCGCTCCAAGCAGATGG
CCAAGTGCGCGGCCAGCACATCCGGATCGCTCGGCGTTCGCTTGTGCGGA
ATGCAGACCTACCTGGCCGATCTGGAACAGTATGCCAAGCGTGACAAGTA
CTGGGGCCGCGAGCTTAACGAGGGCGGATTCAAGACTGCGTTGCACGATT
TCTTTCACAATGGCTACCGCCTGCGCATCCGTGTCATCCGCAAGATTCTG
CAGCGCCTGCTCCAATTACGAAGGGTGATTGAAAAGCAGTCGAGCTACAG
ATTCTACTCTTGCTCACTGCTCATTGTGTACGAGGGCTTTGAGGAGAATC
CAATGGCCCCCCCTCCCTCGATGAGTCAGGATGAGTGGCCAGAGGCGCCC
AGGTCGGCCACTGTGCCCGGCACTGTCTTCGATTATCATCCGGAGAACAG
CATAGACGAGGACGATCTGGAGGATGACGACGAGGCAGGCAACGAGGCTG
GCGATGAGCTGGAGGCGCACGACACCGACGATGATCTGCATCTGGTGGCC
GCCGACAGTGGCAACGCTTCGGCGACGAACAGCAGCACAGGAGGAGATGC
CTGCAACTACGATGCAGATGCTTCCCACG
BS07274.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10082-PB | 2019 | CG10082-RB | 1..905 | 17..921 | 4525 | 100 | Plus |
CG10082-PA | 2709 | CG10082-RA | 694..1595 | 20..921 | 4510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10082-RB | 2795 | CG10082-RB | 422..1334 | 17..929 | 4535 | 99.8 | Plus |
CG10082-RA | 4001 | CG10082-RA | 1124..2033 | 20..929 | 4520 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21655121..21655502 | 231..612 | 1910 | 100 | Plus |
2R | 25286936 | 2R | 21655591..21655908 | 612..929 | 1560 | 99.4 | Plus |
2R | 25286936 | 2R | 21654774..21654907 | 20..153 | 670 | 100 | Plus |
2R | 25286936 | 2R | 21654968..21655046 | 152..230 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:39:10 has no hits.
BS07274.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:56 Download gff for
BS07274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-PB | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:17 Download gff for
BS07274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-PB | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:36:50 Download gff for
BS07274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-RB | 418..1334 | 12..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:03:02 Download gff for
BS07274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-RB | 418..1334 | 12..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:03:02 Download gff for
BS07274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21655592..21655908 | 613..929 | 99 | | Plus |
2R | 21654770..21654907 | 12..153 | 97 | -> | Plus |
2R | 21654970..21655046 | 154..230 | 100 | -> | Plus |
2R | 21655121..21655502 | 231..612 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:36:50 Download gff for
BS07274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17542275..17542412 | 12..153 | 97 | -> | Plus |
arm_2R | 17542475..17542551 | 154..230 | 100 | -> | Plus |
arm_2R | 17542626..17543007 | 231..612 | 100 | -> | Plus |
arm_2R | 17543097..17543413 | 613..929 | 99 | | Plus |
BS07274.complete Sequence
2051 bp assembled on 2008-01-02
GenBank Submission: FJ635798
> BS07274.complete
GAAGTTATCAGTCGACATGGGCGTCATGCAGGCCACCACCATGGGCGGAG
CCAAGCTGGACAAGCGCTACTCGCCTAGTTTCCGGGATGACGCGGCCGCC
GTTCCCGTTCGCAAGATGAGCGCCTCCAAGAGGAAGCGGGATGAGGTGCT
GAGAATGAAGGTGCACAAGAATGGACAGGCCGCTGAAGTGATCAAAAGCA
TCTCACAACTGGACAACACCAATAAGCAATACTTCCTTATGCTCGAGAAC
ATCACATCGCAGTTCCGCAATCCCTGCATCCTGGACCTCAAGATGGGCAC
TCGTCAGCATGGAGATGATGCGTCGGCGGAGAAGCGCTCCAAGCAGATGG
CCAAGTGCGCGGCCAGCACATCCGGATCGCTCGGCGTTCGCTTGTGCGGA
ATGCAGACCTACCTGGCCGATCTGGAACAGTATGCCAAGCGTGACAAGTA
CTGGGGCCGCGAGCTTAACGAGGGCGGATTCAAGACTGCGTTGCACGATT
TCTTTCACAATGGCTACCGCCTGCGCATCCGTGTCATCCGCAAGATTCTG
CAGCGCCTGCTCCAATTACGAAGGGTGATTGAAAAGCAGTCGAGCTACAG
ATTCTACTCTTGCTCACTGCTCATTGTGTACGAGGGCTTTGAGGAGAATC
CAATGGCCCCCCCTCCCTCGATGAGTCAGGATGAGTGGCCAGAGGCGCCC
AGGTCGGCCACTGTGCCCGGCACTGTCTTCGATTATCATCCGGAGAACAG
CATAGACGAGGACGATCTGGAGGATGACGACGAGGCAGGCAACGAGGCTG
GCGATGAGCTGGAGGCGCACGACACCGACGATGATCTGCATCTGGTGGCC
GCCGACAGTGGCAACGCTTCGGCGACGAACAGCAGCACAGGAGGAGATGC
CTGCAACTACGATGCAGATGCCTCCAACGATTCTAACTCATTGCTGAACC
TGGCTACCAGACGTCACCTGCACAAGCGTGGATTTGCAGAGGCAGCGGCG
CGAGGAGTTAAGCAGACGGCATCCCACAATACCACTACCGATGAGGAGGA
GGAGGATGAGCACCCGGCTATGCCACCGCCTCGGACTTGTGGTGTTATGG
CCGCCAAAGCGGCAGCCGCTGCCGCTGGCCTGGCCGGAAAGGGCCAGGGA
GCATTCATTCCAATCTCCGAAGAGACAGTATTTCTGGACCCAGAGCCAGC
GCTGCCCAGCGTGACGACTTCATCGCCACATTCCGGTGACTCATGGATGA
ACTATAGCAGCAACAGCAGCGACGACTTCTCCGGATTATCCGAGCAGATA
AAGGCTGTGGCCAGTGGGCGGCAGACATGCAATAACAGCAGTGATGACGC
AAGTTCAGATTACGAAAGCAGTATCATTGGGCCAACGGAGGCTATGTTTA
AGCGATATAAGTCTCAGCAATCTTTTGACGCCGCCACAGCTGCCGACTCT
GCGTCCTCCCCGCCACTCACTGCCGGAAACTCGAGCGTTTCCAATGGCGG
CACCACAGTCCGTTCACTGGTTTCGCCCGCTTCATCCAGCGCCTCCTCTC
TGAAATCGGTCAAGGGTGCAGTGAAGCGGCTACGATGCAATGATGATGAT
CAGCAGTCTGCGAGCCTGGGGGAATCGGATTTGCGAGAAGCGAAGAAGTC
GACGATCACTTCGACACCCGTTTCGGCCGTATCCTCGCCAGCTAAGGCAG
CCCCACAACTGCGCAGCTGTGAGAGTATCTCAAACCAGCAATCTCTGCTG
TCGGGCCTGCTCCTGGATAATAACAATGAGCAGCGTCGCAATGCACTTCT
GCAGCAAAGCTCAAAGTCGCTGGACATGTCGGCACCGCCCACTGATGATA
ACCAGTGCTTCGTGGACGTCCGGCTCATCGACTTTGCCCACACGGCATTC
GTGCCGCGCAATGGCACCATGCTACCCACTCCGGCGGCAGCTCCGGTGCA
CCATGGACCCGACGGGGGATTCCTTACCGGTCTGGATAGCCTCAACCGCC
TGCTCAACGAAATTGTGGCCGAGGAACGCGCCTAAAAGCTTTCTAGACCA
T
BS07274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10082-RB | 2019 | CG10082-PB | 1..2019 | 17..2035 | 10095 | 100 | Plus |
CG10082-RA | 2709 | CG10082-PA | 694..2709 | 20..2035 | 10080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10082-RB | 2795 | CG10082-RB | 422..2440 | 17..2035 | 10095 | 100 | Plus |
CG10082-RA | 4001 | CG10082-RA | 1124..3139 | 20..2035 | 10080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21655591..21656308 | 612..1329 | 3590 | 100 | Plus |
2R | 25286936 | 2R | 21656367..21657073 | 1329..2035 | 3535 | 100 | Plus |
2R | 25286936 | 2R | 21655121..21655502 | 231..612 | 1910 | 100 | Plus |
2R | 25286936 | 2R | 21654774..21654907 | 20..153 | 670 | 100 | Plus |
2R | 25286936 | 2R | 21654968..21655046 | 152..230 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2902 | 1250..1373 | 114 | 63.1 | Plus |
BS07274.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:11 Download gff for
BS07274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-RB | 1..2019 | 17..2035 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:08 Download gff for
BS07274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-RB | 422..2438 | 17..2033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:05 Download gff for
BS07274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-RB | 422..2438 | 17..2033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:11 Download gff for
BS07274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-RB | 418..2448 | 12..2045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:33 Download gff for
BS07274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10082-RB | 422..2438 | 17..2033 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:33 Download gff for
BS07274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21654773..21654907 | 17..153 | 98 | -> | Plus |
2R | 21654970..21655046 | 154..230 | 100 | -> | Plus |
2R | 21655121..21655502 | 231..612 | 100 | -> | Plus |
2R | 21655592..21656307 | 613..1328 | 100 | -> | Plus |
2R | 21656367..21657071 | 1329..2033 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:05 Download gff for
BS07274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17542278..17542412 | 17..153 | 98 | -> | Plus |
arm_2R | 17542475..17542551 | 154..230 | 100 | -> | Plus |
arm_2R | 17542626..17543007 | 231..612 | 100 | -> | Plus |
arm_2R | 17543097..17543812 | 613..1328 | 100 | -> | Plus |
arm_2R | 17543872..17544576 | 1329..2033 | 100 | | Plus |
BS07274.pep Sequence
Translation from 16 to 2034
> BS07274.pep
MGVMQATTMGGAKLDKRYSPSFRDDAAAVPVRKMSASKRKRDEVLRMKVH
KNGQAAEVIKSISQLDNTNKQYFLMLENITSQFRNPCILDLKMGTRQHGD
DASAEKRSKQMAKCAASTSGSLGVRLCGMQTYLADLEQYAKRDKYWGREL
NEGGFKTALHDFFHNGYRLRIRVIRKILQRLLQLRRVIEKQSSYRFYSCS
LLIVYEGFEENPMAPPPSMSQDEWPEAPRSATVPGTVFDYHPENSIDEDD
LEDDDEAGNEAGDELEAHDTDDDLHLVAADSGNASATNSSTGGDACNYDA
DASNDSNSLLNLATRRHLHKRGFAEAAARGVKQTASHNTTTDEEEEDEHP
AMPPPRTCGVMAAKAAAAAAGLAGKGQGAFIPISEETVFLDPEPALPSVT
TSSPHSGDSWMNYSSNSSDDFSGLSEQIKAVASGRQTCNNSSDDASSDYE
SSIIGPTEAMFKRYKSQQSFDAATAADSASSPPLTAGNSSVSNGGTTVRS
LVSPASSSASSLKSVKGAVKRLRCNDDDQQSASLGESDLREAKKSTITST
PVSAVSSPAKAAPQLRSCESISNQQSLLSGLLLDNNNEQRRNALLQQSSK
SLDMSAPPTDDNQCFVDVRLIDFAHTAFVPRNGTMLPTPAAAPVHHGPDG
GFLTGLDSLNRLLNEIVAEERA*
BS07274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10082-PB | 672 | CG10082-PB | 1..672 | 1..672 | 3446 | 100 | Plus |
CG10082-PA | 902 | CG10082-PA | 232..902 | 2..672 | 3441 | 100 | Plus |
Ipk2-PA | 309 | CG13688-PA | 94..252 | 67..217 | 168 | 30.1 | Plus |