Clone Sequence Records
BS07276.3prime Sequence
942 bp (788 high quality bases) assembled on 2006-01-06
> BS07276.3prime
ATGGTCTAGAAAGCTTCTAAAAAACTGCTTTTTTGTTTGGGTACCCAAAG
AAACCAATGCTTTTAAGCTCCATAAGAAGCTCGTGGTCGTTGCCAATTGC
CTTGAAAATGGCTTTCTCTAACTCGTCGTATTGGAAGTGTGGCGAAAAGG
GCATGTCGTTCAGGGCGTTGAAGAGCGTGTTCCCGCGCTCGTTGCCAATA
ACCAATGTGCGACCACAGTGGGAAAACCTGGCCACAGTATTAAAAGAAGA
GTCCATCTTGTGCTTGGACATGGGTCTTAGCAAATTTCGGCGAAAGTCCC
AGACGTTAGCGGTTTCCCGGTTCACCGTCACAATAATCGTAGAGTGGGTG
GGGCTCCACTTGGCCCAATGCACTGGGGTCATCTCGTCTAGCAGTTCGAG
AAGAGGTCGCGTGATGCCATCGACCCAAATGCGTACGAACCAATCGTTGC
CGCAGGTGAGGAAGAGTTTGGGAGACCAAGGCGAGAACTCCATTACGGTG
ACACCCCCGTCGTGACAACGCAGGACTTCCAAGTACTGATGCTGATAATT
GATTGAGCACTTGTGGATGCAGCCCTCATCTGTCAGCACGTAGTAAATGT
CCTTGTGCAGAGGATGTGTAGTGATGCTTAAGCCTTGCGGGTGGCGGTTA
GACTCGCAGGGGATACGCGACGATGGGTGAACGAAAATGCCCTCAGGATG
CCCCTCGACTCGCTCCAGAATCATTTGGGTAAAACCAAGCAGGAAGGGAC
TTTTGATAATCCGGAAGCGGGTGACCGAGCCATCCTGGGAGAGGCTCAGG
AATGGATCGATGTCTGTTTCATGATCGTCGTCTGAAACTTGTTTGATCCA
GCGGATGGCAACCACCGGCGAGGAGCCTGGCGAAGTGCTGCGCTGCGAGA
CCGCAACGGGTGTGTCCTGCAAACTGCTCAAATCTCGCACTT
BS07276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7051-PB | 2055 | CG7051-RB | 1130..2055 | 942..17 | 4605 | 99.8 | Minus |
| CG7051-PA | 2295 | CG7051-RA | 1370..2295 | 942..17 | 4605 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RB | 2642 | CG7051-RB | 1588..2514 | 942..16 | 4620 | 99.9 | Minus |
| Dic61B-RA | 2616 | CG7051-RA | 1562..2488 | 942..16 | 4620 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 150347..150850 | 439..942 | 2505 | 99.8 | Plus |
| 3L | 28110227 | 3L | 150082..150297 | 226..441 | 1080 | 100 | Plus |
| 3L | 28110227 | 3L | 149807..150020 | 16..229 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:12:38 has no hits.
BS07276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:57 Download gff for
BS07276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-PA | 1370..2295 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:19 Download gff for
BS07276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-PA | 1370..2295 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:34 Download gff for
BS07276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 1562..2488 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:25 Download gff for
BS07276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 1562..2488 | 16..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:25 Download gff for
BS07276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 149807..150018 | 16..227 | 100 | <- | Plus |
| 3L | 150084..150296 | 228..440 | 100 | <- | Plus |
| 3L | 150349..150850 | 441..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:34 Download gff for
BS07276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 149807..150018 | 16..227 | 100 | <- | Plus |
| arm_3L | 150084..150296 | 228..440 | 100 | <- | Plus |
| arm_3L | 150349..150850 | 441..942 | 99 | | Plus |
BS07276.5prime Sequence
883 bp (858 high quality bases) assembled on 2006-01-06
> BS07276.5prime
GAAGTTATCAGTCGACATGACACCTAAGTCGATCCAAGATGACACCTATG
TGGAGCAGTTCATGAAGTACAACCTAAATGTCATGCACCAAATGACTAAC
TTCACTACAATGGTAGCGAAGAGCACGACCAGATCCCGCACGCGGTCTAG
TGTTCGGGCCGGAATAGGCGGCAATAAGCAGTCCATTGACGACCTGATGA
ACGGGATACTTTATGAAACTATTAACTGGGAACCGTACAGCACTGTTGAG
GCTCTCGAAGAGGCGTACGAGCCAAAGCCGTATACCAAGTCCTTTTTAAA
GATCACCTTACGCAAGTCTGACTTCTTCGAAATTCACAGCCAGACGCAGA
CGACGGTGGCCAAGGGATCGCCCGAGGGCGACGATGCGGAGCGAGACAAC
CGAAACTACGAGTATCTGACAATAGGGAAAGGCAAAATTCGCCGGCGCTC
AGACAATGACGCTCAGACAGATACTCTGCTCTTCACCACTCGGGCAGTCA
ACACCATCCTCATAACCAAGGCCACCGTCAGCTCTTACGTTTCCAACTTT
GAGATGTACGACACGCTGAACAATATCACCAAGGAGTTCGCAACAGCCAC
TATGAGTTCGGTAAAGGACCTGACCTCGGCTCTAGCGCAGACGGAGGATG
CGGATACCTTTGAGGACGACGAGGCCGTTGCCGAAAAAGACAAGGTCAGC
AGCCAGATAGAGCGCCTGTTCCGGAGCCCCGAGTTTCGCAACGCCATCAT
GTACATGGGCCGCACGCTCTCGAGCAACACAAACGAGGCGGGGTTACGAC
GCTTCCGTAACTTTGACCAGGTGGAACGCTGGAACGCGGAGGCCGAGTAC
GTCTACTCGATGAACTTGCTCTTTCGGCTGGTA
BS07276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7051-PB | 2055 | CG7051-RB | 1..867 | 17..883 | 4335 | 100 | Plus |
| CG7051-PA | 2295 | CG7051-RA | 241..1107 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RB | 2642 | CG7051-RB | 459..1325 | 17..883 | 4335 | 100 | Plus |
| Dic61B-RA | 2616 | CG7051-RA | 433..1299 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 151113..151791 | 883..205 | 3395 | 100 | Minus |
| 3L | 28110227 | 3L | 151848..152036 | 205..17 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:12:24 has no hits.
BS07276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:58 Download gff for
BS07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-PA | 235..1106 | 11..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:21 Download gff for
BS07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-PA | 235..1106 | 11..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:56:40 Download gff for
BS07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 427..1298 | 11..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:13:47 Download gff for
BS07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 427..1298 | 11..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:13:47 Download gff for
BS07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 151114..151790 | 206..882 | 100 | <- | Minus |
| 3L | 151848..152042 | 11..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:56:40 Download gff for
BS07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 151114..151790 | 206..882 | 100 | <- | Minus |
| arm_3L | 151848..152042 | 11..205 | 98 | | Minus |
BS07276.complete Sequence
2087 bp assembled on 2008-01-02
GenBank Submission: FJ635799
> BS07276.complete
GAAGTTATCAGTCGACATGACACCTAAGTCGATCCAAGATGACACCTATG
TGGAGCAGTTCATGAAGTACAACCTAAATGTCATGCACCAAATGACTAAC
TTCACTACAATGGTAGCGAAGAGCACGACCAGATCCCGCACGCGGTCTAG
TGTTCGGGCCGGAATAGGCGGCAATAAGCAGTCCATTGACGACCTGATGA
ACGGGATACTTTATGAAACTATTAACTGGGAACCGTACAGCACTGTTGAG
GCTCTCGAAGAGGCGTACGAGCCAAAGCCGTATACCAAGTCCTTTTTAAA
GATCACCTTACGCAAGTCTGACTTCTTCGAAATTCACAGCCAGACGCAGA
CGACGGTGGCCAAGGGATCGCCCGAGGGCGACGATGCGGAGCGAGACAAC
CGAAACTACGAGTATCTGACAATAGGGAAAGGCAAAATTCGCCGGCGCTC
AGACAATGACGCTCAGACAGATACTCTGCTCTTCACCACTCGGGCAGTCA
ACACCATCCTCATAACCAAGGCCACCGTCAGCTCTTACGTTTCCAACTTT
GAGATGTACGACACGCTGAACAATATCACCAAGGAGTTCGCAACAGCCAC
TATGAGTTCGGTAAAGGACCTGACCTCGGCTCTAGCGCAGACGGAGGATG
CGGATACCTTTGAGGACGACGAGGCCGTTGCCGAAAAAGACAAGGTCAGC
AGCCAGATAGAGCGCCTGTTCCGGAGCCCCGAGTTTCGCAACGCCATCAT
GTACATGGGCCGCACGCTCTCGAGCAACACAAACGAGGCGGGGTTACGAC
GCTTCCGTAACTTTGACCAGGTGGAACGCTGGAACGCGGAGGCCGAGTAC
GTCTACTCGATGAACTTGCTCTTTCGGCTGGTACCGGAGCCCAGCAAAGA
CGAGCGCAAGGCCGTAAGCGACATTGATTTCTGCCGCAGCAATGGTGACA
TCCTGGCTGTAGCCTACGGACTGTACTCATTTTCCTCACAGCACGTACCG
ACCTCCGGCAGCGTTTTCCTGTGGAGCATTAAAAATCCAGGCGAGCCGGA
GCGCGCATACTACTACGATGTGCCAGTAACGGCAATAAACTTCTCGCCAT
TCTTGCCATCCTTGCTCGCCATTGGTCTGTACGACGGCAGCGTGGAAGTG
CGAGATGTGAGCAGTTTGCAGGACACACCCGTTGCGGTCTCGCAGCGCAG
CACTTCGCCAGGCTCCTCGCCGGTGGTTGCCATCCGCTGGATCAAACAAG
TTTCAGACGACGATCATGAAACAGACATCGATCCATTCCTGAGCCTCTCC
CAGGATGGCTCGGTCACCCGCTTCCGGATTATCAAAAGTCCCTTCCTGCT
TGGTTTTACCCAAATGATTCTGGAGCGAGTCGAGGGGCATCCTGAGGGCA
TTTTCGTTCACCCATCGTCGCGTATCCCCTGCGAGTCTAACCGCCACCCG
CAAGGCTTAAGCATCACTACACATCCTCTGCACAAGGACATTTACTACGT
GCTGACAGATGAGGGCTGCATCCACAAGTGCTCAATCAATTATCAGCATC
AGTACTTGGAAGTCCTGCGTTGTCACGACGGGGGTGTCACCGTAATGGAG
TTCTCGCCTTGGTCTCCCAAACTCTTCCTCACCTGCGGCAACGATTGGTT
CGTACGCATTTGGGTCGATGGCATCACGCGACCTCTTCTCGAACTGCTAG
ACGAGATGACCCCAGTGCATTGGGCCAAGTGGAGCCCCACCCACTCTACG
ATTATTGTGACGGTGAACCGGGAAACCGCTAACGTCTGGGACTTTCGCCG
AAATTTGCTAAGACCCATGTCCAAGCACAAGATGGACTCTTCTTTTAATA
CTGTGGCCAGGTTTTCCCACTGTGGTCGCACATTGGTTATTGGCAACGAG
CGCGGGAACACGCTCTTCAACGCCCTGAACGACATGCCCTTTTCGCCACA
CTTCCAATACGACGAGTTAGAGAAAGCCATTTTCAAGGCAATTGGCAACG
ACCACGAGCTTCTTATGGAGCTTAAAAGCATTGGTTTCTTTGGGTACCCA
AACAAAAAAGCAGTTTTTTAGAAGCTTTCTAGACCAT
BS07276.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RB | 2055 | CG7051-PB | 1..2055 | 17..2071 | 10275 | 100 | Plus |
| Dic61B-RA | 2295 | CG7051-PA | 241..2295 | 17..2071 | 10275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RB | 2642 | CG7051-RB | 459..2514 | 17..2072 | 10280 | 100 | Plus |
| Dic61B-RA | 2616 | CG7051-RA | 433..2488 | 17..2072 | 10280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 150347..151791 | 1649..205 | 7225 | 100 | Minus |
| 3L | 28110227 | 3L | 150082..150297 | 1862..1647 | 1080 | 100 | Minus |
| 3L | 28110227 | 3L | 149807..150020 | 2072..1859 | 1070 | 100 | Minus |
| 3L | 28110227 | 3L | 151848..152036 | 205..17 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:12:06 has no hits.
BS07276.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:12 Download gff for
BS07276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-RA | 235..2295 | 11..2071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:27 Download gff for
BS07276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-RA | 433..2487 | 17..2071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:26 Download gff for
BS07276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 433..2487 | 17..2071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:13 Download gff for
BS07276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-RA | 427..2488 | 11..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:11 Download gff for
BS07276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 433..2487 | 17..2071 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:11 Download gff for
BS07276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 149808..150018 | 1861..2071 | 100 | <- | Minus |
| 3L | 150084..150296 | 1648..1860 | 100 | <- | Minus |
| 3L | 150349..151790 | 206..1647 | 100 | <- | Minus |
| 3L | 151848..152036 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:26 Download gff for
BS07276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 149808..150018 | 1861..2071 | 100 | <- | Minus |
| arm_3L | 150084..150296 | 1648..1860 | 100 | <- | Minus |
| arm_3L | 150349..151790 | 206..1647 | 100 | <- | Minus |
| arm_3L | 151848..152036 | 17..205 | 100 | | Minus |
BS07276.pep Sequence
Translation from 16 to 2070
> BS07276.pep
MTPKSIQDDTYVEQFMKYNLNVMHQMTNFTTMVAKSTTRSRTRSSVRAGI
GGNKQSIDDLMNGILYETINWEPYSTVEALEEAYEPKPYTKSFLKITLRK
SDFFEIHSQTQTTVAKGSPEGDDAERDNRNYEYLTIGKGKIRRRSDNDAQ
TDTLLFTTRAVNTILITKATVSSYVSNFEMYDTLNNITKEFATATMSSVK
DLTSALAQTEDADTFEDDEAVAEKDKVSSQIERLFRSPEFRNAIMYMGRT
LSSNTNEAGLRRFRNFDQVERWNAEAEYVYSMNLLFRLVPEPSKDERKAV
SDIDFCRSNGDILAVAYGLYSFSSQHVPTSGSVFLWSIKNPGEPERAYYY
DVPVTAINFSPFLPSLLAIGLYDGSVEVRDVSSLQDTPVAVSQRSTSPGS
SPVVAIRWIKQVSDDDHETDIDPFLSLSQDGSVTRFRIIKSPFLLGFTQM
ILERVEGHPEGIFVHPSSRIPCESNRHPQGLSITTHPLHKDIYYVLTDEG
CIHKCSINYQHQYLEVLRCHDGGVTVMEFSPWSPKLFLTCGNDWFVRIWV
DGITRPLLELLDEMTPVHWAKWSPTHSTIIVTVNRETANVWDFRRNLLRP
MSKHKMDSSFNTVARFSHCGRTLVIGNERGNTLFNALNDMPFSPHFQYDE
LEKAIFKAIGNDHELLMELKSIGFFGYPNKKAVF*
BS07276.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-PB | 684 | CG7051-PB | 1..684 | 1..684 | 3593 | 100 | Plus |
| Dic61B-PA | 764 | CG7051-PA | 81..764 | 1..684 | 3593 | 100 | Plus |
| CG13930-PA | 685 | CG13930-PA | 42..677 | 37..678 | 1301 | 43.2 | Plus |
| CG9313-PC | 739 | CG9313-PC | 355..681 | 294..632 | 310 | 28.7 | Plus |
| CG9313-PA | 739 | CG9313-PA | 355..681 | 294..632 | 310 | 28.7 | Plus |
