Clone Sequence Records
BS07277.3prime Sequence
870 bp (850 high quality bases) assembled on 2006-01-06
> BS07277.3prime
ATGGTCTAGAAAGCTTTCACCACCGCTCTGGATCATCGTTGCTGGTCAGC
TGGCAAGGCATCATCACGCACTTTTCCATGCGGACGCGATCCTTGCACTT
GTAGCTCAGATCGGTGTTCATTAGGGTTCGGGTTCGTTGGCGAACGGCAT
TATCGCCACACGTGGCGGTGCATGGTGTCCAGGCGGACCACTCCGAGTAG
CGACACTCGTCCTGCGGTTCCGGTTGCGGAGCTCTTACCACATGCCTTCG
CTCTCCAAATCCCCGTCCACTGATTGAGTACATGTCATCGCACCGCTGGT
AGCAGCGATCCAAACGTACCAGGTGCTTGGGACATGGCTTGCCTCCATAC
TTCGGAGTACGGAGCACCCGACGCGTTCGCAATTGGAAGCCATCGCCGCA
GGAGGCGTTGCAACTGTGGGAAACCCAGTCAGAGACGAGACAATCAATGG
CTGGAATGCCATCGTGCTGCAGTTCCTGTTTGTGGCGCGGCAGGCGACAT
GTCTCCTCGCACTCCTCCTTCGACTTGAATTTGTTGCGATTTGTATCACA
ACGATCCGACCAATAGATGGCACACTGGTCACTCACATGGTCGTAGTACC
AGAAGTTGGCCACATCGTTATCCCGACACGGACTGTCGGTCAGCTCGTCG
TAGCAGAAGCCGGGAACAATGGTATCGCAGCTAGGATTGGTGCAGTTCAC
CTCCTCGTGCAGCTTGATGTGTCGACAGGGATCCTGGCCGTCATCATTGG
GATCCGTTACTCCGTACACCTGGTTGTTATTCCACACCTTGCGAATACGT
TGCCGCTTTCCATGTCCACCGCATGGCCCCATGCACGGCGAGAAATCCGA
CCATGGAGTGACCCCGCAAA
BS07277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-PA | 2622 | CG17739-RA | 1769..2622 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-RA | 2830 | CG17739-RA | 1804..2658 | 870..16 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12309386..12310240 | 870..16 | 4275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:58:17 has no hits.
BS07277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:59 Download gff for
BS07277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-PA | 1772..2622 | 17..867 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:22 Download gff for
BS07277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-PA | 1772..2622 | 17..867 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:08:24 Download gff for
BS07277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 1807..2658 | 16..867 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:38 Download gff for
BS07277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 1807..2658 | 16..867 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:38 Download gff for
BS07277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12309389..12310240 | 16..867 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:08:24 Download gff for
BS07277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8196894..8197745 | 16..867 | 100 | | Minus |
BS07277.5prime Sequence
880 bp (797 high quality bases) assembled on 2006-01-06
> BS07277.5prime
GAAGTTATCAGTCGACATGAAAGCTCTGGAAGGTTTCACTATTCTTCTCG
CATTAGTGGGTGTTATTCCCCGGATCGAGGGCTGCATTAGGGTCCCACCG
GGAGTCACAGCAGCCAAGTCACCGGTGGATGATAACTATGTGCTGTCCGT
AAACGGAAATACGCAGAGTTATGTGCCCGGTCAAAGGTATAATGTTAGCC
TCAGTGCATTTTCTGGCTTGTCCTTCATTAGCTTTATGCTGGCCCTGGAT
TTGGAGAGTGGTGACGGCGATGGTGACGCCAATGCCCTGGGCACCTGGGA
GATCGCCGATCTCGCCGAGACCCGTTTCAGTCCGCGCTGCCCAAATCTTG
TCGAGAATACCAACACGAACGTGAAGACACGCGTGGATGTGTTCTGGGTG
GCTCCATCGAGTCCGGGACAGGGCTGCATCCTGCTGAGGGCTACGGTGAT
GCAGCATCGAGATGTGTGGTTCATGGATGATGGCTTCCTTACCAAGCGTA
TGTGCGAGGAGGAGGTGGACGACATTGACACCCAGCCCAGCATCGTGGAT
CCGTGCTGTGCCTGTGACGAGGCCAAATATGAGCTTACCTTCGAAGGCAA
GTGGTCGCGTCACACACATCCCAAGGACTTTCCAGCGAATAGCTGGCGCA
CCAGATTCAGCGATATCATTGGTGCCTCGCACACACTGGACTACAGATTC
TGGCAGTATGGAGAGCTGGCCAGCGAGGGGCTGCGTGAGGTGGCGGAGCA
TGGCTCCACAAGGACCTTGGAGAGTGAGCTGAAGGATCAGAGCGAACACA
TTCGCACGATCATCAAGGCAAGGGGCATTGCCTATCCGAATGTTACGGGC
AAAACATTTGCCGTTTTTTCGCGTCGACTC
BS07277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-PA | 2622 | CG17739-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-RA | 2830 | CG17739-RA | 36..898 | 17..880 | 4295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12307558..12307947 | 194..583 | 1950 | 100 | Plus |
2R | 25286936 | 2R | 12307999..12308296 | 582..880 | 1445 | 99.7 | Plus |
2R | 25286936 | 2R | 12307288..12307465 | 17..194 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:26:28 has no hits.
BS07277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:00 Download gff for
BS07277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-PA | 1..863 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:23 Download gff for
BS07277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-PA | 1..863 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:00:18 Download gff for
BS07277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 28..898 | 8..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:40 Download gff for
BS07277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 28..898 | 8..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:40 Download gff for
BS07277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12307280..12307465 | 8..194 | 97 | -> | Plus |
2R | 12307559..12307947 | 195..583 | 100 | -> | Plus |
2R | 12308001..12308296 | 584..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:00:18 Download gff for
BS07277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8194785..8194970 | 8..194 | 97 | -> | Plus |
arm_2R | 8195064..8195452 | 195..583 | 100 | -> | Plus |
arm_2R | 8195506..8195801 | 584..880 | 99 | | Plus |
BS07277.complete Sequence
2654 bp assembled on 2008-01-02
GenBank Submission: FJ635800
> BS07277.complete
GAAGTTATCAGTCGACATGAAAGCTCTGGAAGGTTTCACTATTCTTCTCG
CATTAGTGGGTGTTATTCCCCGGATCGAGGGCTGCATTAGGGTCCCACCG
GGAGTCACAGCAGCCAAGTCACCGGTGGATGATAACTATGTGCTGTCCGT
AAACGGAAATACGCAGAGTTATGTGCCCGGTCAAAGGTATAATGTTAGCC
TCAGTGCATTTTCTGGCTTGTCCTTCATTAGCTTTATGCTGGCCCTGGAT
TTGGAGAGTGGTGACGGCGATGGTGACGCCAATGCCCTGGGCACCTGGGA
GATCGCCGATCTCGCCGAGACCCGTTTCAGTCCGCGCTGCCCAAATCTTG
TCGAGAATACCAACACGAACGTGAAGACACGCGTGGATGTGTTCTGGGTG
GCTCCATCGAGTCCGGGACAGGGCTGCATCCTGCTGAGGGCTACGGTGAT
GCAGCATCGAGATGTGTGGTTCATGGATGATGGCTTCCTTACCAAGCGTA
TGTGCGAGGAGGAGGTGGACGACATTGACACCCAGCCCAGCATCGTGGAT
CCGTGCTGTGCCTGTGACGAGGCCAAATATGAGCTTACCTTCGAAGGCAA
GTGGTCGCGTCACACACATCCCAAGGACTTTCCAGCGAATAGCTGGCGCA
CCAGATTCAGCGATATCATTGGTGCCTCGCACACACTGGACTACAGATTC
TGGCAGTATGGAGAGCTGGCCAGCGAGGGGCTGCGTGAGGTGGCGGAGCA
TGGCTCCACAAGGACCTTGGAGAGTGAGCTGAAGGATCAGAGCGAACACA
TTCGCACGATCATCAAGGCAAGGGGCATTGCCTATCCGAATGTTACGGGC
AAAACATTTGCCGTTTTTCGCGTCGACTCCAACCACCATTTGATCTCCCT
CGTATCAATGGTGGATCCCTCTCCAGACTGGATCGTTGGTGTATCCGGCC
TCGAGCTATGTCTGCCCAACTGTTCCTGGGTGGAGAACAAGGTGCACAAC
CTATATCCCTGGGATGCGGGCACCGATAGTGGTCCATCATATATGTCCGC
TGACCAGCCACAGGTGCCTCCAGATGTTGTGCGCCGCATCAAATCAAATT
TCCCCAACGATCCCCGTTCGCCCTTTTATGATCCCACTGGTGCCCAGATG
AAGCCATTGGCCACCCTGCACATCAATCGAAGACGACTCTACGAAAAGAA
CTGCGAGTCCTCCGATTCGGAACAGGTACCGCCGGAGTGCGCCACAAACT
CGTGGTCCAGATGGGATGAATGCACCACAAAGTGCGGTCCCGGCAAGCAA
TACAGAATCCGAGAGTTCAAGAACCCTGCATTGGCTTCGCGTCATCGTTG
CAACAATGCCCTGCGTGAGGAGAAGAACTGCGTGGGACACAAGTGCGCTG
GCTTCAATGAGGAGACAGCTGAAGGCGGCGAGCCGGAGGTGGCGCCATCA
CCAGGTAGCAGCGACGATCCCCAGTGCGGTCTGTCTGACTGGTCGGAGTG
GTCTTCGTGCACCGTGACTTGTGGAACCGGCGAAATGACCCGATCCCGAC
ACTATCTAAACAAGAAGGCCAAGAAGAAGTGCCAGAAGGCAAGCAGGGCG
CGTCTGCATGAGACCAAGATTTGCGAGGCAATGGAATGCGGTGGGGACAT
CGAGAACGAAGGTGGTGCTGGGGAACCGGAGGAGGAACAGGCCGGTGGCG
ACGGAGGTGGATCCGCTGAGAAACGCTCCATATTCCGCAACTTCGAGAGT
TACAGTCAGCATCGGGAGGATTACATACCACCGGTTTGCGGGGTCACTCC
ATGGTCGGATTTCTCGCCGTGCATGGGGCCATGCGGTGGACATGGAAAGC
GGCAACGTATTCGCAAGGTGTGGAATAACAACCAGGTGTACGGAGTAACG
GATCCCAATGATGACGGCCAGGATCCCTGTCGACACATCAAGCTGCACGA
GGAGGTGAACTGCACCAATCCTAGCTGCGATACCATTGTTCCCGGCTTCT
GCTACGACGAGCTGACCGACAGTCCGTGTCGGGATAACGATGTGGCCAAC
TTCTGGTACTACGACCATGTGAGTGACCAGTGTGCCATCTATTGGTCGGA
TCGTTGTGATACAAATCGCAACAAATTCAAGTCGAAGGAGGAGTGCGAGG
AGACATGTCGCCTGCCGCGCCACAAACAGGAACTGCAGCACGATGGCATT
CCAGCCATTGATTGTCTCGTCTCTGACTGGGTTTCCCACAGTTGCAACGC
CTCCTGCGGCGATGGCTTCCAATTGCGAACGCGTCGGGTGCTCCGTACTC
CGAAGTATGGAGGCAAGCCATGTCCCAAGCACCTGGTACGTTTGGATCGC
TGCTACCAGCGGTGCGATGACATGTACTCAATCAGTGGACGGGGATTTGG
AGAGCGAAGGCATGTGGTAAGAGCTCCGCAACCGGAACCGCAGGACGAGT
GTCGCTACTCGGAGTGGTCCGCCTGGACACCATGCACCGCCACGTGTGGC
GATAATGCCGTTCGCCAACGAACCCGAACCCTAATGAACACCGATCTGAG
CTACAAGTGCAAGGATCGCGTCCGCATGGAAAAGTGCGTGATGATGCCTT
GCCAGCTGACCAGCAACGATGATCCAGAGCGGTGGTGAAAGCTTTCTAGA
CCAT
BS07277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-RA | 2622 | CG17739-PA | 1..2622 | 17..2638 | 13110 | 100 | Plus |
CG30203-RB | 2775 | CG30203-PB | 988..1148 | 1004..1164 | 220 | 75.8 | Plus |
CG30046-RC | 2520 | CG30046-PC | 931..1091 | 917..1077 | 205 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-RA | 2830 | CG17739-RA | 36..2658 | 17..2639 | 13115 | 100 | Plus |
CG30203-RB | 2877 | CG30203-RB | 1024..1184 | 1004..1164 | 220 | 75.8 | Plus |
CG30046-RC | 2986 | CG30046-RC | 1002..1162 | 917..1077 | 205 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12308936..12310240 | 1335..2639 | 6510 | 99.9 | Plus |
2R | 25286936 | 2R | 12307999..12308462 | 582..1045 | 2320 | 100 | Plus |
2R | 25286936 | 2R | 12307558..12307947 | 194..583 | 1950 | 100 | Plus |
2R | 25286936 | 2R | 12307288..12307465 | 17..194 | 890 | 100 | Plus |
2R | 25286936 | 2R | 12308518..12308690 | 1045..1217 | 865 | 100 | Plus |
2R | 25286936 | 2R | 12308755..12308876 | 1218..1339 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:27 has no hits.
BS07277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:14 Download gff for
BS07277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 1..2622 | 17..2638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:09 Download gff for
BS07277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 40..2660 | 17..2637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:36 Download gff for
BS07277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 36..2656 | 17..2637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:14 Download gff for
BS07277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 32..2662 | 8..2639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:37 Download gff for
BS07277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 36..2656 | 17..2637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:37 Download gff for
BS07277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12308519..12308690 | 1046..1217 | 100 | -> | Plus |
2R | 12308755..12308876 | 1218..1339 | 100 | -> | Plus |
2R | 12307288..12307465 | 17..194 | 100 | -> | Plus |
2R | 12307559..12307947 | 195..583 | 100 | -> | Plus |
2R | 12308001..12308462 | 584..1045 | 100 | -> | Plus |
2R | 12308941..12310238 | 1340..2637 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:36 Download gff for
BS07277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8194793..8194970 | 17..194 | 100 | -> | Plus |
arm_2R | 8195064..8195452 | 195..583 | 100 | -> | Plus |
arm_2R | 8195506..8195967 | 584..1045 | 100 | -> | Plus |
arm_2R | 8196024..8196195 | 1046..1217 | 100 | -> | Plus |
arm_2R | 8196260..8196381 | 1218..1339 | 100 | -> | Plus |
arm_2R | 8196446..8197743 | 1340..2637 | 100 | | Plus |
BS07277.pep Sequence
Translation from 16 to 2637
> BS07277.pep
MKALEGFTILLALVGVIPRIEGCIRVPPGVTAAKSPVDDNYVLSVNGNTQ
SYVPGQRYNVSLSAFSGLSFISFMLALDLESGDGDGDANALGTWEIADLA
ETRFSPRCPNLVENTNTNVKTRVDVFWVAPSSPGQGCILLRATVMQHRDV
WFMDDGFLTKRMCEEEVDDIDTQPSIVDPCCACDEAKYELTFEGKWSRHT
HPKDFPANSWRTRFSDIIGASHTLDYRFWQYGELASEGLREVAEHGSTRT
LESELKDQSEHIRTIIKARGIAYPNVTGKTFAVFRVDSNHHLISLVSMVD
PSPDWIVGVSGLELCLPNCSWVENKVHNLYPWDAGTDSGPSYMSADQPQV
PPDVVRRIKSNFPNDPRSPFYDPTGAQMKPLATLHINRRRLYEKNCESSD
SEQVPPECATNSWSRWDECTTKCGPGKQYRIREFKNPALASRHRCNNALR
EEKNCVGHKCAGFNEETAEGGEPEVAPSPGSSDDPQCGLSDWSEWSSCTV
TCGTGEMTRSRHYLNKKAKKKCQKASRARLHETKICEAMECGGDIENEGG
AGEPEEEQAGGDGGGSAEKRSIFRNFESYSQHREDYIPPVCGVTPWSDFS
PCMGPCGGHGKRQRIRKVWNNNQVYGVTDPNDDGQDPCRHIKLHEEVNCT
NPSCDTIVPGFCYDELTDSPCRDNDVANFWYYDHVSDQCAIYWSDRCDTN
RNKFKSKEECEETCRLPRHKQELQHDGIPAIDCLVSDWVSHSCNASCGDG
FQLRTRRVLRTPKYGGKPCPKHLVRLDRCYQRCDDMYSISGRGFGERRHV
VRAPQPEPQDECRYSEWSAWTPCTATCGDNAVRQRTRTLMNTDLSYKCKD
RVRMEKCVMMPCQLTSNDDPERW*
BS07277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-PA | 873 | CG17739-PA | 1..873 | 1..873 | 4859 | 100 | Plus |
CG30046-PC | 839 | CG30046-PC | 12..789 | 11..717 | 1661 | 44.1 | Plus |
CG30046-PB | 839 | CG30046-PB | 12..789 | 11..717 | 1661 | 44.1 | Plus |
CG30203-PB | 924 | CG30203-PB | 19..781 | 23..722 | 1628 | 42.7 | Plus |
fat-spondin-PA | 763 | CG6953-PA | 3..758 | 5..779 | 1139 | 34.1 | Plus |