Clone BS07277 Report

Search the DGRC for BS07277

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG17739-RA
Protein status:BS07277.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07277.3prime Sequence

870 bp (850 high quality bases) assembled on 2006-01-06

> BS07277.3prime
ATGGTCTAGAAAGCTTTCACCACCGCTCTGGATCATCGTTGCTGGTCAGC
TGGCAAGGCATCATCACGCACTTTTCCATGCGGACGCGATCCTTGCACTT
GTAGCTCAGATCGGTGTTCATTAGGGTTCGGGTTCGTTGGCGAACGGCAT
TATCGCCACACGTGGCGGTGCATGGTGTCCAGGCGGACCACTCCGAGTAG
CGACACTCGTCCTGCGGTTCCGGTTGCGGAGCTCTTACCACATGCCTTCG
CTCTCCAAATCCCCGTCCACTGATTGAGTACATGTCATCGCACCGCTGGT
AGCAGCGATCCAAACGTACCAGGTGCTTGGGACATGGCTTGCCTCCATAC
TTCGGAGTACGGAGCACCCGACGCGTTCGCAATTGGAAGCCATCGCCGCA
GGAGGCGTTGCAACTGTGGGAAACCCAGTCAGAGACGAGACAATCAATGG
CTGGAATGCCATCGTGCTGCAGTTCCTGTTTGTGGCGCGGCAGGCGACAT
GTCTCCTCGCACTCCTCCTTCGACTTGAATTTGTTGCGATTTGTATCACA
ACGATCCGACCAATAGATGGCACACTGGTCACTCACATGGTCGTAGTACC
AGAAGTTGGCCACATCGTTATCCCGACACGGACTGTCGGTCAGCTCGTCG
TAGCAGAAGCCGGGAACAATGGTATCGCAGCTAGGATTGGTGCAGTTCAC
CTCCTCGTGCAGCTTGATGTGTCGACAGGGATCCTGGCCGTCATCATTGG
GATCCGTTACTCCGTACACCTGGTTGTTATTCCACACCTTGCGAATACGT
TGCCGCTTTCCATGTCCACCGCATGGCCCCATGCACGGCGAGAAATCCGA
CCATGGAGTGACCCCGCAAA

BS07277.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-PA 2622 CG17739-RA 1769..2622 870..17 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-RA 2830 CG17739-RA 1804..2658 870..16 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12309386..12310240 870..16 4275 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:58:17 has no hits.

BS07277.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:07:59 Download gff for BS07277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-PA 1772..2622 17..867 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:22 Download gff for BS07277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-PA 1772..2622 17..867 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:08:24 Download gff for BS07277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 1807..2658 16..867 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:38 Download gff for BS07277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 1807..2658 16..867 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:38 Download gff for BS07277.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12309389..12310240 16..867 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:08:24 Download gff for BS07277.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8196894..8197745 16..867 100   Minus

BS07277.5prime Sequence

880 bp (797 high quality bases) assembled on 2006-01-06

> BS07277.5prime
GAAGTTATCAGTCGACATGAAAGCTCTGGAAGGTTTCACTATTCTTCTCG
CATTAGTGGGTGTTATTCCCCGGATCGAGGGCTGCATTAGGGTCCCACCG
GGAGTCACAGCAGCCAAGTCACCGGTGGATGATAACTATGTGCTGTCCGT
AAACGGAAATACGCAGAGTTATGTGCCCGGTCAAAGGTATAATGTTAGCC
TCAGTGCATTTTCTGGCTTGTCCTTCATTAGCTTTATGCTGGCCCTGGAT
TTGGAGAGTGGTGACGGCGATGGTGACGCCAATGCCCTGGGCACCTGGGA
GATCGCCGATCTCGCCGAGACCCGTTTCAGTCCGCGCTGCCCAAATCTTG
TCGAGAATACCAACACGAACGTGAAGACACGCGTGGATGTGTTCTGGGTG
GCTCCATCGAGTCCGGGACAGGGCTGCATCCTGCTGAGGGCTACGGTGAT
GCAGCATCGAGATGTGTGGTTCATGGATGATGGCTTCCTTACCAAGCGTA
TGTGCGAGGAGGAGGTGGACGACATTGACACCCAGCCCAGCATCGTGGAT
CCGTGCTGTGCCTGTGACGAGGCCAAATATGAGCTTACCTTCGAAGGCAA
GTGGTCGCGTCACACACATCCCAAGGACTTTCCAGCGAATAGCTGGCGCA
CCAGATTCAGCGATATCATTGGTGCCTCGCACACACTGGACTACAGATTC
TGGCAGTATGGAGAGCTGGCCAGCGAGGGGCTGCGTGAGGTGGCGGAGCA
TGGCTCCACAAGGACCTTGGAGAGTGAGCTGAAGGATCAGAGCGAACACA
TTCGCACGATCATCAAGGCAAGGGGCATTGCCTATCCGAATGTTACGGGC
AAAACATTTGCCGTTTTTTCGCGTCGACTC

BS07277.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-PA 2622 CG17739-RA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-RA 2830 CG17739-RA 36..898 17..880 4295 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12307558..12307947 194..583 1950 100 Plus
2R 25286936 2R 12307999..12308296 582..880 1445 99.7 Plus
2R 25286936 2R 12307288..12307465 17..194 890 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:26:28 has no hits.

BS07277.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:00 Download gff for BS07277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-PA 1..863 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:23 Download gff for BS07277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-PA 1..863 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:00:18 Download gff for BS07277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 28..898 8..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:40 Download gff for BS07277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 28..898 8..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:40 Download gff for BS07277.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12307280..12307465 8..194 97 -> Plus
2R 12307559..12307947 195..583 100 -> Plus
2R 12308001..12308296 584..880 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:00:18 Download gff for BS07277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8194785..8194970 8..194 97 -> Plus
arm_2R 8195064..8195452 195..583 100 -> Plus
arm_2R 8195506..8195801 584..880 99   Plus

BS07277.complete Sequence

2654 bp assembled on 2008-01-02

GenBank Submission: FJ635800

> BS07277.complete
GAAGTTATCAGTCGACATGAAAGCTCTGGAAGGTTTCACTATTCTTCTCG
CATTAGTGGGTGTTATTCCCCGGATCGAGGGCTGCATTAGGGTCCCACCG
GGAGTCACAGCAGCCAAGTCACCGGTGGATGATAACTATGTGCTGTCCGT
AAACGGAAATACGCAGAGTTATGTGCCCGGTCAAAGGTATAATGTTAGCC
TCAGTGCATTTTCTGGCTTGTCCTTCATTAGCTTTATGCTGGCCCTGGAT
TTGGAGAGTGGTGACGGCGATGGTGACGCCAATGCCCTGGGCACCTGGGA
GATCGCCGATCTCGCCGAGACCCGTTTCAGTCCGCGCTGCCCAAATCTTG
TCGAGAATACCAACACGAACGTGAAGACACGCGTGGATGTGTTCTGGGTG
GCTCCATCGAGTCCGGGACAGGGCTGCATCCTGCTGAGGGCTACGGTGAT
GCAGCATCGAGATGTGTGGTTCATGGATGATGGCTTCCTTACCAAGCGTA
TGTGCGAGGAGGAGGTGGACGACATTGACACCCAGCCCAGCATCGTGGAT
CCGTGCTGTGCCTGTGACGAGGCCAAATATGAGCTTACCTTCGAAGGCAA
GTGGTCGCGTCACACACATCCCAAGGACTTTCCAGCGAATAGCTGGCGCA
CCAGATTCAGCGATATCATTGGTGCCTCGCACACACTGGACTACAGATTC
TGGCAGTATGGAGAGCTGGCCAGCGAGGGGCTGCGTGAGGTGGCGGAGCA
TGGCTCCACAAGGACCTTGGAGAGTGAGCTGAAGGATCAGAGCGAACACA
TTCGCACGATCATCAAGGCAAGGGGCATTGCCTATCCGAATGTTACGGGC
AAAACATTTGCCGTTTTTCGCGTCGACTCCAACCACCATTTGATCTCCCT
CGTATCAATGGTGGATCCCTCTCCAGACTGGATCGTTGGTGTATCCGGCC
TCGAGCTATGTCTGCCCAACTGTTCCTGGGTGGAGAACAAGGTGCACAAC
CTATATCCCTGGGATGCGGGCACCGATAGTGGTCCATCATATATGTCCGC
TGACCAGCCACAGGTGCCTCCAGATGTTGTGCGCCGCATCAAATCAAATT
TCCCCAACGATCCCCGTTCGCCCTTTTATGATCCCACTGGTGCCCAGATG
AAGCCATTGGCCACCCTGCACATCAATCGAAGACGACTCTACGAAAAGAA
CTGCGAGTCCTCCGATTCGGAACAGGTACCGCCGGAGTGCGCCACAAACT
CGTGGTCCAGATGGGATGAATGCACCACAAAGTGCGGTCCCGGCAAGCAA
TACAGAATCCGAGAGTTCAAGAACCCTGCATTGGCTTCGCGTCATCGTTG
CAACAATGCCCTGCGTGAGGAGAAGAACTGCGTGGGACACAAGTGCGCTG
GCTTCAATGAGGAGACAGCTGAAGGCGGCGAGCCGGAGGTGGCGCCATCA
CCAGGTAGCAGCGACGATCCCCAGTGCGGTCTGTCTGACTGGTCGGAGTG
GTCTTCGTGCACCGTGACTTGTGGAACCGGCGAAATGACCCGATCCCGAC
ACTATCTAAACAAGAAGGCCAAGAAGAAGTGCCAGAAGGCAAGCAGGGCG
CGTCTGCATGAGACCAAGATTTGCGAGGCAATGGAATGCGGTGGGGACAT
CGAGAACGAAGGTGGTGCTGGGGAACCGGAGGAGGAACAGGCCGGTGGCG
ACGGAGGTGGATCCGCTGAGAAACGCTCCATATTCCGCAACTTCGAGAGT
TACAGTCAGCATCGGGAGGATTACATACCACCGGTTTGCGGGGTCACTCC
ATGGTCGGATTTCTCGCCGTGCATGGGGCCATGCGGTGGACATGGAAAGC
GGCAACGTATTCGCAAGGTGTGGAATAACAACCAGGTGTACGGAGTAACG
GATCCCAATGATGACGGCCAGGATCCCTGTCGACACATCAAGCTGCACGA
GGAGGTGAACTGCACCAATCCTAGCTGCGATACCATTGTTCCCGGCTTCT
GCTACGACGAGCTGACCGACAGTCCGTGTCGGGATAACGATGTGGCCAAC
TTCTGGTACTACGACCATGTGAGTGACCAGTGTGCCATCTATTGGTCGGA
TCGTTGTGATACAAATCGCAACAAATTCAAGTCGAAGGAGGAGTGCGAGG
AGACATGTCGCCTGCCGCGCCACAAACAGGAACTGCAGCACGATGGCATT
CCAGCCATTGATTGTCTCGTCTCTGACTGGGTTTCCCACAGTTGCAACGC
CTCCTGCGGCGATGGCTTCCAATTGCGAACGCGTCGGGTGCTCCGTACTC
CGAAGTATGGAGGCAAGCCATGTCCCAAGCACCTGGTACGTTTGGATCGC
TGCTACCAGCGGTGCGATGACATGTACTCAATCAGTGGACGGGGATTTGG
AGAGCGAAGGCATGTGGTAAGAGCTCCGCAACCGGAACCGCAGGACGAGT
GTCGCTACTCGGAGTGGTCCGCCTGGACACCATGCACCGCCACGTGTGGC
GATAATGCCGTTCGCCAACGAACCCGAACCCTAATGAACACCGATCTGAG
CTACAAGTGCAAGGATCGCGTCCGCATGGAAAAGTGCGTGATGATGCCTT
GCCAGCTGACCAGCAACGATGATCCAGAGCGGTGGTGAAAGCTTTCTAGA
CCAT

BS07277.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-RA 2622 CG17739-PA 1..2622 17..2638 13110 100 Plus
CG30203-RB 2775 CG30203-PB 988..1148 1004..1164 220 75.8 Plus
CG30046-RC 2520 CG30046-PC 931..1091 917..1077 205 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-RA 2830 CG17739-RA 36..2658 17..2639 13115 100 Plus
CG30203-RB 2877 CG30203-RB 1024..1184 1004..1164 220 75.8 Plus
CG30046-RC 2986 CG30046-RC 1002..1162 917..1077 205 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12308936..12310240 1335..2639 6510 99.9 Plus
2R 25286936 2R 12307999..12308462 582..1045 2320 100 Plus
2R 25286936 2R 12307558..12307947 194..583 1950 100 Plus
2R 25286936 2R 12307288..12307465 17..194 890 100 Plus
2R 25286936 2R 12308518..12308690 1045..1217 865 100 Plus
2R 25286936 2R 12308755..12308876 1218..1339 610 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:48:27 has no hits.

BS07277.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:14 Download gff for BS07277.complete
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 1..2622 17..2638 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:09 Download gff for BS07277.complete
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 40..2660 17..2637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:36 Download gff for BS07277.complete
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 36..2656 17..2637 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:14 Download gff for BS07277.complete
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 32..2662 8..2639 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:37 Download gff for BS07277.complete
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 36..2656 17..2637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:37 Download gff for BS07277.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12308519..12308690 1046..1217 100 -> Plus
2R 12308755..12308876 1218..1339 100 -> Plus
2R 12307288..12307465 17..194 100 -> Plus
2R 12307559..12307947 195..583 100 -> Plus
2R 12308001..12308462 584..1045 100 -> Plus
2R 12308941..12310238 1340..2637 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:36 Download gff for BS07277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8194793..8194970 17..194 100 -> Plus
arm_2R 8195064..8195452 195..583 100 -> Plus
arm_2R 8195506..8195967 584..1045 100 -> Plus
arm_2R 8196024..8196195 1046..1217 100 -> Plus
arm_2R 8196260..8196381 1218..1339 100 -> Plus
arm_2R 8196446..8197743 1340..2637 100   Plus

BS07277.pep Sequence

Translation from 16 to 2637

> BS07277.pep
MKALEGFTILLALVGVIPRIEGCIRVPPGVTAAKSPVDDNYVLSVNGNTQ
SYVPGQRYNVSLSAFSGLSFISFMLALDLESGDGDGDANALGTWEIADLA
ETRFSPRCPNLVENTNTNVKTRVDVFWVAPSSPGQGCILLRATVMQHRDV
WFMDDGFLTKRMCEEEVDDIDTQPSIVDPCCACDEAKYELTFEGKWSRHT
HPKDFPANSWRTRFSDIIGASHTLDYRFWQYGELASEGLREVAEHGSTRT
LESELKDQSEHIRTIIKARGIAYPNVTGKTFAVFRVDSNHHLISLVSMVD
PSPDWIVGVSGLELCLPNCSWVENKVHNLYPWDAGTDSGPSYMSADQPQV
PPDVVRRIKSNFPNDPRSPFYDPTGAQMKPLATLHINRRRLYEKNCESSD
SEQVPPECATNSWSRWDECTTKCGPGKQYRIREFKNPALASRHRCNNALR
EEKNCVGHKCAGFNEETAEGGEPEVAPSPGSSDDPQCGLSDWSEWSSCTV
TCGTGEMTRSRHYLNKKAKKKCQKASRARLHETKICEAMECGGDIENEGG
AGEPEEEQAGGDGGGSAEKRSIFRNFESYSQHREDYIPPVCGVTPWSDFS
PCMGPCGGHGKRQRIRKVWNNNQVYGVTDPNDDGQDPCRHIKLHEEVNCT
NPSCDTIVPGFCYDELTDSPCRDNDVANFWYYDHVSDQCAIYWSDRCDTN
RNKFKSKEECEETCRLPRHKQELQHDGIPAIDCLVSDWVSHSCNASCGDG
FQLRTRRVLRTPKYGGKPCPKHLVRLDRCYQRCDDMYSISGRGFGERRHV
VRAPQPEPQDECRYSEWSAWTPCTATCGDNAVRQRTRTLMNTDLSYKCKD
RVRMEKCVMMPCQLTSNDDPERW*

BS07277.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-PA 873 CG17739-PA 1..873 1..873 4859 100 Plus
CG30046-PC 839 CG30046-PC 12..789 11..717 1661 44.1 Plus
CG30046-PB 839 CG30046-PB 12..789 11..717 1661 44.1 Plus
CG30203-PB 924 CG30203-PB 19..781 23..722 1628 42.7 Plus
fat-spondin-PA 763 CG6953-PA 3..758 5..779 1139 34.1 Plus