Clone Sequence Records
BS07278.3prime Sequence
876 bp (861 high quality bases) assembled on 2006-01-06
> BS07278.3prime
ATGGTCTAGAAAGCTTTTACAACAGCCTCTCCAGATCCTCGCTCTCCGCG
TCGCTGATAAAGGAGTCGGTGTCCGTGAAATAATCGTCGTCGCACCTGTT
CCGGCGACAACAGACCCTGCGACCAATCTCCTCGTCGCTCCAGTGCTCAA
ATTCCTCCTTGTGGTGCTCCAGCAGCATTAGCGACGGGAACAAACTATCG
CAGCCACTGCAACCGAAGTGTCGCTTCTTCTGCTGGTGCGATGCCAACTG
GCGGTGACAATGGAAAGCTCGGTCGCACACGTTGCAGGTGAGTGATTCGT
CGTAGTCATCATCGTCATCCGCCATGGCCAGCGCATGCAGACGACTTATT
GTGTTTTCGTTAATCTCCTTCGATGTTGACGTGCTGCCTGCGCCGAGGTC
CTTTGATGTTTTGGCTTTCGCCTGGCACAATCCCAGCTCGCAGAGGGCGC
TCTCCACCTCGTAGTTGCCCTGGCAATCGGCATCCATGCAGGGCAGGAGT
GACAGGTTCCCGTTTCCACTCCCGTTACCGTTCCCATTGCCGTTCCCACA
GCCTGCCGCTCCTGTGGATCCTAAGCCTGAACCCGAGCCCCCGTTGACAT
TGACGTTGCCATTGGCTTCTCCTGGTACCTGACTGCTACAGCCGGCAGTG
GCGGAGTTCGCTGCCAGCATTTCAAAGTCGTCTAGCTCATCGAACGGATC
ATCGATTTTGTGGCCAAGTGAGACGGCATCGTCGGCCTCGGCACTCAGTC
GTCCATATGCCTTCCGTGGGGGCCTCTTCACATATTTGTCTTGTGTGCTG
TTGTTGTGATTACCGCCGTTTGAGTTGCTCTTGGAAAAGCTGCAGTTGTT
GTTGAAGGAGTTGAAGAAGTTGGCGG
BS07278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-PA | 888 | CG11317-RA | 29..888 | 876..17 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-RA | 1795 | CG11317-RA | 281..1141 | 876..16 | 4305 | 100 | Minus |
CG11317-RB | 1804 | CG11317-RB | 281..1150 | 876..16 | 4205 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31092055..31092545 | 301..791 | 2455 | 100 | Plus |
3R | 32079331 | 3R | 31091366..31091563 | 16..213 | 990 | 100 | Plus |
3R | 32079331 | 3R | 31091686..31091774 | 213..301 | 445 | 100 | Plus |
3R | 32079331 | 3R | 31096955..31097041 | 790..876 | 435 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6780 | 867..796 | 126 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6801 | 872..796 | 126 | 64.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6849 | 872..796 | 115 | 61 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..577 | 863..820 | 112 | 72.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2410 | 863..789 | 111 | 62.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6904 | 854..792 | 108 | 63.5 | Minus |
BS07278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:01 Download gff for
BS07278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-PA | 29..888 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:25 Download gff for
BS07278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-PA | 29..888 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:30 Download gff for
BS07278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 281..1141 | 16..876 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:49:12 Download gff for
BS07278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 281..1141 | 16..876 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:49:12 Download gff for
BS07278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31091366..31091562 | 16..212 | 100 | <- | Plus |
3R | 31091686..31091773 | 213..300 | 100 | <- | Plus |
3R | 31092055..31092543 | 301..789 | 100 | <- | Plus |
3R | 31096955..31097041 | 790..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:30 Download gff for
BS07278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26917088..26917284 | 16..212 | 100 | <- | Plus |
arm_3R | 26917408..26917495 | 213..300 | 100 | <- | Plus |
arm_3R | 26917777..26918265 | 301..789 | 100 | <- | Plus |
arm_3R | 26922677..26922763 | 790..876 | 100 | | Plus |
BS07278.5prime Sequence
917 bp (785 high quality bases) assembled on 2006-01-06
> BS07278.5prime
GAAGTTATCAGTCGACATGTTTTGGATTTTACGGCGCACCGGTGCCGCCA
ACTTCTTCAACTCCTTCAACAACAACTGCAGCTTTTCCAAGAGCAACTCA
AACGGCGGTAATCACAACAACAGCACACAAGACAAATATGTGAAGAGGCC
CCCACGGAAGGCATATGGACGACTGAGTGCCGAGGCCGACGATGCCGTCT
CACTTGGCCACAAAATCGATGATCCGTTCGATGAGCTAGACGACTTTGAA
ATGCTGGCAGCGAACTCCGCCACTGCCGGCTGTAGCAGTCAGGTACCAGG
AGAAGCCAATGGCAACGTCAATGTCAACGGGGGCTCGGGTTCAGGCTTAG
GATCCACAGGAGCGGCAGGCTGTGGGAACGGCAATGGGAACGGTAACGGG
AGTGGAAACGGGAACCTGTCACTCCTGCCCTGCATGGATGCCGATTGCCA
GGGCAACTACGAGGTGGAGAGCGCCCTCTGCGAGCTGGGATTGTGCCAGG
CGAAAGCCAAAACATCAAAGGACCTCGGCGCAGGCAGCACGTCAACATCG
AAGGAGATTAACGAAAACACAATAAGTCGTCTGCATGCGCTGGCCATGGC
GGATGACGATGATGACTACGACGAATCACTCACCTGCAACGTGTGCGACC
GAGCTTTCCATTGTCACCGCCAGTTGGCATCGCACCAGCAGAAGAAGCGA
CACTTCGGTTGCAGTGGCTGCGATAGTTTGTTCCCGTCGCTAATGCTGCT
GGAGCACCACAAGGAGGAATTTGAGCACTGGAGCGACGAGGAGATTGGTC
GCAGGGTCTGTTGTCGCCGGAACAGGTGCGACGACGATTATTTCACGGAC
ACCGACTCTTTATCAGCGACGCGGAGAGCGAGGATCTGGAGAGGCTGTTG
TAAAAGCTTTCTAGACC
BS07278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-PA | 888 | CG11317-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
CG11317-PA | 888 | CG11317-RA | 843..888 | 858..903 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-RA | 1795 | CG11317-RA | 252..1141 | 16..904 | 4425 | 99.9 | Plus |
CG11317-RB | 1804 | CG11317-RB | 252..1150 | 16..904 | 4325 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31092055..31092545 | 620..130 | 2455 | 100 | Minus |
3R | 32079331 | 3R | 31091366..31091563 | 904..708 | 940 | 99.5 | Minus |
3R | 32079331 | 3R | 31096955..31097070 | 131..16 | 580 | 100 | Minus |
3R | 32079331 | 3R | 31091686..31091774 | 708..620 | 445 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 00:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6801 | 43..125 | 127 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6780 | 54..125 | 126 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6849 | 49..125 | 115 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2410 | 37..132 | 114 | 62.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..577 | 58..101 | 112 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6904 | 36..129 | 110 | 57.4 | Plus |
BS07278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:02 Download gff for
BS07278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:26 Download gff for
BS07278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:47 Download gff for
BS07278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 252..1141 | 16..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:35 Download gff for
BS07278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 252..1141 | 16..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:35 Download gff for
BS07278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31091366..31091562 | 709..904 | 99 | <- | Minus |
3R | 31091686..31091773 | 621..708 | 100 | <- | Minus |
3R | 31092055..31092543 | 132..620 | 100 | <- | Minus |
3R | 31096955..31097070 | 16..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:47 Download gff for
BS07278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26922677..26922792 | 16..131 | 100 | | Minus |
arm_3R | 26917088..26917284 | 709..904 | 99 | <- | Minus |
arm_3R | 26917408..26917495 | 621..708 | 100 | <- | Minus |
arm_3R | 26917777..26918265 | 132..620 | 100 | <- | Minus |
BS07278.complete Sequence
920 bp (920 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635801
> BS07278.complete
GAAGTTATCAGTCGACATGTTTTGGATTTTACGGCGCACCGGTGCCGCCA
ACTTCTTCAACTCCTTCAACAACAACTGCAGCTTTTCCAAGAGCAACTCA
AACGGCGGTAATCACAACAACAGCACACAAGACAAATATGTGAAGAGGCC
CCCACGGAAGGCATATGGACGACTGAGTGCCGAGGCCGACGATGCCGTCT
CACTTGGCCACAAAATCGATGATCCGTTCGATGAGCTAGACGACTTTGAA
ATGCTGGCAGCGAACTCCGCCACTGCCGGCTGTAGCAGTCAGGTACCAGG
AGAAGCCAATGGCAACGTCAATGTCAACGGGGGCTCGGGTTCAGGCTTAG
GATCCACAGGAGCGGCAGGCTGTGGGAACGGCAATGGGAACGGTAACGGG
AGTGGAAACGGGAACCTGTCACTCCTGCCCTGCATGGATGCCGATTGCCA
GGGCAACTACGAGGTGGAGAGCGCCCTCTGCGAGCTGGGATTGTGCCAGG
CGAAAGCCAAAACATCAAAGGACCTCGGCGCAGGCAGCACGTCAACATCG
AAGGAGATTAACGAAAACACAATAAGTCGTCTGCATGCGCTGGCCATGGC
GGATGACGATGATGACTACGACGAATCACTCACCTGCAACGTGTGCGACC
GAGCTTTCCATTGTCACCGCCAGTTGGCATCGCACCAGCAGAAGAAGCGA
CACTTCGGTTGCAGTGGCTGCGATAGTTTGTTCCCGTCGCTAATGCTGCT
GGAGCACCACAAGGAGGAATTTGAGCACTGGAGCGACGAGGAGATTGGTC
GCAGGGTCTGTTGTCGCCGGAACAGGTGCGACGACGATTATTTCACGGAC
ACCGACTCCTTTATCAGCGACGCGGAGAGCGAGGATCTGGAGAGGCTGTT
GTAAAAGCTTTCTAGACCAT
BS07278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-RA | 888 | CG11317-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
CG11317-RB | 897 | CG11317-PB | 1..897 | 17..904 | 4315 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-RA | 1795 | CG11317-RA | 252..1141 | 16..905 | 4450 | 100 | Plus |
CG11317-RB | 1804 | CG11317-RB | 252..1150 | 16..905 | 4325 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31092055..31092545 | 620..130 | 2455 | 100 | Minus |
3R | 32079331 | 3R | 31091366..31091563 | 905..708 | 990 | 100 | Minus |
3R | 32079331 | 3R | 31096955..31097070 | 131..16 | 580 | 100 | Minus |
3R | 32079331 | 3R | 31091686..31091774 | 708..620 | 445 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6801 | 43..125 | 127 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6780 | 54..125 | 126 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6849 | 49..125 | 115 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2410 | 37..132 | 114 | 62.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..577 | 58..101 | 112 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6904 | 36..129 | 110 | 57.4 | Plus |
BS07278.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:57 Download gff for
BS07278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:18 Download gff for
BS07278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 249..1138 | 16..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:02 Download gff for
BS07278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 260..1138 | 24..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:57 Download gff for
BS07278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 249..1138 | 16..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:11 Download gff for
BS07278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 260..1138 | 24..902 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:11 Download gff for
BS07278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31091369..31091562 | 709..902 | 100 | <- | Minus |
3R | 31091686..31091773 | 621..708 | 100 | <- | Minus |
3R | 31092055..31092543 | 132..620 | 100 | <- | Minus |
3R | 31096955..31097062 | 24..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:02 Download gff for
BS07278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26917091..26917284 | 709..902 | 100 | <- | Minus |
arm_3R | 26917408..26917495 | 621..708 | 100 | <- | Minus |
arm_3R | 26917777..26918265 | 132..620 | 100 | <- | Minus |
arm_3R | 26922677..26922784 | 24..131 | 100 | | Minus |
BS07278.pep Sequence
Translation from 16 to 903
> BS07278.pep
MFWILRRTGAANFFNSFNNNCSFSKSNSNGGNHNNSTQDKYVKRPPRKAY
GRLSAEADDAVSLGHKIDDPFDELDDFEMLAANSATAGCSSQVPGEANGN
VNVNGGSGSGLGSTGAAGCGNGNGNGNGSGNGNLSLLPCMDADCQGNYEV
ESALCELGLCQAKAKTSKDLGAGSTSTSKEINENTISRLHALAMADDDDD
YDESLTCNVCDRAFHCHRQLASHQQKKRHFGCSGCDSLFPSLMLLEHHKE
EFEHWSDEEIGRRVCCRRNRCDDDYFTDTDSFISDAESEDLERLL*
BS07278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-PA | 295 | CG11317-PA | 1..295 | 1..295 | 1601 | 100 | Plus |
CG11317-PB | 298 | CG11317-PB | 1..298 | 1..295 | 1587 | 99 | Plus |