Clone BS07278 Report

Search the DGRC for BS07278

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG11317-RA
Protein status:BS07278.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07278.3prime Sequence

876 bp (861 high quality bases) assembled on 2006-01-06

> BS07278.3prime
ATGGTCTAGAAAGCTTTTACAACAGCCTCTCCAGATCCTCGCTCTCCGCG
TCGCTGATAAAGGAGTCGGTGTCCGTGAAATAATCGTCGTCGCACCTGTT
CCGGCGACAACAGACCCTGCGACCAATCTCCTCGTCGCTCCAGTGCTCAA
ATTCCTCCTTGTGGTGCTCCAGCAGCATTAGCGACGGGAACAAACTATCG
CAGCCACTGCAACCGAAGTGTCGCTTCTTCTGCTGGTGCGATGCCAACTG
GCGGTGACAATGGAAAGCTCGGTCGCACACGTTGCAGGTGAGTGATTCGT
CGTAGTCATCATCGTCATCCGCCATGGCCAGCGCATGCAGACGACTTATT
GTGTTTTCGTTAATCTCCTTCGATGTTGACGTGCTGCCTGCGCCGAGGTC
CTTTGATGTTTTGGCTTTCGCCTGGCACAATCCCAGCTCGCAGAGGGCGC
TCTCCACCTCGTAGTTGCCCTGGCAATCGGCATCCATGCAGGGCAGGAGT
GACAGGTTCCCGTTTCCACTCCCGTTACCGTTCCCATTGCCGTTCCCACA
GCCTGCCGCTCCTGTGGATCCTAAGCCTGAACCCGAGCCCCCGTTGACAT
TGACGTTGCCATTGGCTTCTCCTGGTACCTGACTGCTACAGCCGGCAGTG
GCGGAGTTCGCTGCCAGCATTTCAAAGTCGTCTAGCTCATCGAACGGATC
ATCGATTTTGTGGCCAAGTGAGACGGCATCGTCGGCCTCGGCACTCAGTC
GTCCATATGCCTTCCGTGGGGGCCTCTTCACATATTTGTCTTGTGTGCTG
TTGTTGTGATTACCGCCGTTTGAGTTGCTCTTGGAAAAGCTGCAGTTGTT
GTTGAAGGAGTTGAAGAAGTTGGCGG

BS07278.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-PA 888 CG11317-RA 29..888 876..17 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-RA 1795 CG11317-RA 281..1141 876..16 4305 100 Minus
CG11317-RB 1804 CG11317-RB 281..1150 876..16 4205 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31092055..31092545 301..791 2455 100 Plus
3R 32079331 3R 31091366..31091563 16..213 990 100 Plus
3R 32079331 3R 31091686..31091774 213..301 445 100 Plus
3R 32079331 3R 31096955..31097041 790..876 435 100 Plus
Blast to na_te.dros performed 2015-02-12 19:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6709..6780 867..796 126 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6801 872..796 126 64.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6849 872..796 115 61 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 534..577 863..820 112 72.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2410 863..789 111 62.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6842..6904 854..792 108 63.5 Minus

BS07278.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:01 Download gff for BS07278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-PA 29..888 17..876 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:25 Download gff for BS07278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-PA 29..888 17..876 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:30 Download gff for BS07278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 281..1141 16..876 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:49:12 Download gff for BS07278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 281..1141 16..876 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:49:12 Download gff for BS07278.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31091366..31091562 16..212 100 <- Plus
3R 31091686..31091773 213..300 100 <- Plus
3R 31092055..31092543 301..789 100 <- Plus
3R 31096955..31097041 790..876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:30 Download gff for BS07278.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26917088..26917284 16..212 100 <- Plus
arm_3R 26917408..26917495 213..300 100 <- Plus
arm_3R 26917777..26918265 301..789 100 <- Plus
arm_3R 26922677..26922763 790..876 100   Plus

BS07278.5prime Sequence

917 bp (785 high quality bases) assembled on 2006-01-06

> BS07278.5prime
GAAGTTATCAGTCGACATGTTTTGGATTTTACGGCGCACCGGTGCCGCCA
ACTTCTTCAACTCCTTCAACAACAACTGCAGCTTTTCCAAGAGCAACTCA
AACGGCGGTAATCACAACAACAGCACACAAGACAAATATGTGAAGAGGCC
CCCACGGAAGGCATATGGACGACTGAGTGCCGAGGCCGACGATGCCGTCT
CACTTGGCCACAAAATCGATGATCCGTTCGATGAGCTAGACGACTTTGAA
ATGCTGGCAGCGAACTCCGCCACTGCCGGCTGTAGCAGTCAGGTACCAGG
AGAAGCCAATGGCAACGTCAATGTCAACGGGGGCTCGGGTTCAGGCTTAG
GATCCACAGGAGCGGCAGGCTGTGGGAACGGCAATGGGAACGGTAACGGG
AGTGGAAACGGGAACCTGTCACTCCTGCCCTGCATGGATGCCGATTGCCA
GGGCAACTACGAGGTGGAGAGCGCCCTCTGCGAGCTGGGATTGTGCCAGG
CGAAAGCCAAAACATCAAAGGACCTCGGCGCAGGCAGCACGTCAACATCG
AAGGAGATTAACGAAAACACAATAAGTCGTCTGCATGCGCTGGCCATGGC
GGATGACGATGATGACTACGACGAATCACTCACCTGCAACGTGTGCGACC
GAGCTTTCCATTGTCACCGCCAGTTGGCATCGCACCAGCAGAAGAAGCGA
CACTTCGGTTGCAGTGGCTGCGATAGTTTGTTCCCGTCGCTAATGCTGCT
GGAGCACCACAAGGAGGAATTTGAGCACTGGAGCGACGAGGAGATTGGTC
GCAGGGTCTGTTGTCGCCGGAACAGGTGCGACGACGATTATTTCACGGAC
ACCGACTCTTTATCAGCGACGCGGAGAGCGAGGATCTGGAGAGGCTGTTG
TAAAAGCTTTCTAGACC

BS07278.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-PA 888 CG11317-RA 1..842 17..858 4210 100 Plus
CG11317-PA 888 CG11317-RA 843..888 858..903 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-RA 1795 CG11317-RA 252..1141 16..904 4425 99.9 Plus
CG11317-RB 1804 CG11317-RB 252..1150 16..904 4325 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31092055..31092545 620..130 2455 100 Minus
3R 32079331 3R 31091366..31091563 904..708 940 99.5 Minus
3R 32079331 3R 31096955..31097070 131..16 580 100 Minus
3R 32079331 3R 31091686..31091774 708..620 445 100 Minus
Blast to na_te.dros performed 2015-02-12 00:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6801 43..125 127 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6709..6780 54..125 126 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6849 49..125 115 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2410 37..132 114 62.7 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 534..577 58..101 112 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6811..6904 36..129 110 57.4 Plus

BS07278.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:02 Download gff for BS07278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-PA 1..888 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:26 Download gff for BS07278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-PA 1..888 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:47 Download gff for BS07278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 252..1141 16..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:35 Download gff for BS07278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 252..1141 16..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:35 Download gff for BS07278.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31091366..31091562 709..904 99 <- Minus
3R 31091686..31091773 621..708 100 <- Minus
3R 31092055..31092543 132..620 100 <- Minus
3R 31096955..31097070 16..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:47 Download gff for BS07278.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26922677..26922792 16..131 100   Minus
arm_3R 26917088..26917284 709..904 99 <- Minus
arm_3R 26917408..26917495 621..708 100 <- Minus
arm_3R 26917777..26918265 132..620 100 <- Minus

BS07278.complete Sequence

920 bp (920 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635801

> BS07278.complete
GAAGTTATCAGTCGACATGTTTTGGATTTTACGGCGCACCGGTGCCGCCA
ACTTCTTCAACTCCTTCAACAACAACTGCAGCTTTTCCAAGAGCAACTCA
AACGGCGGTAATCACAACAACAGCACACAAGACAAATATGTGAAGAGGCC
CCCACGGAAGGCATATGGACGACTGAGTGCCGAGGCCGACGATGCCGTCT
CACTTGGCCACAAAATCGATGATCCGTTCGATGAGCTAGACGACTTTGAA
ATGCTGGCAGCGAACTCCGCCACTGCCGGCTGTAGCAGTCAGGTACCAGG
AGAAGCCAATGGCAACGTCAATGTCAACGGGGGCTCGGGTTCAGGCTTAG
GATCCACAGGAGCGGCAGGCTGTGGGAACGGCAATGGGAACGGTAACGGG
AGTGGAAACGGGAACCTGTCACTCCTGCCCTGCATGGATGCCGATTGCCA
GGGCAACTACGAGGTGGAGAGCGCCCTCTGCGAGCTGGGATTGTGCCAGG
CGAAAGCCAAAACATCAAAGGACCTCGGCGCAGGCAGCACGTCAACATCG
AAGGAGATTAACGAAAACACAATAAGTCGTCTGCATGCGCTGGCCATGGC
GGATGACGATGATGACTACGACGAATCACTCACCTGCAACGTGTGCGACC
GAGCTTTCCATTGTCACCGCCAGTTGGCATCGCACCAGCAGAAGAAGCGA
CACTTCGGTTGCAGTGGCTGCGATAGTTTGTTCCCGTCGCTAATGCTGCT
GGAGCACCACAAGGAGGAATTTGAGCACTGGAGCGACGAGGAGATTGGTC
GCAGGGTCTGTTGTCGCCGGAACAGGTGCGACGACGATTATTTCACGGAC
ACCGACTCCTTTATCAGCGACGCGGAGAGCGAGGATCTGGAGAGGCTGTT
GTAAAAGCTTTCTAGACCAT

BS07278.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-RA 888 CG11317-PA 1..888 17..904 4440 100 Plus
CG11317-RB 897 CG11317-PB 1..897 17..904 4315 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-RA 1795 CG11317-RA 252..1141 16..905 4450 100 Plus
CG11317-RB 1804 CG11317-RB 252..1150 16..905 4325 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31092055..31092545 620..130 2455 100 Minus
3R 32079331 3R 31091366..31091563 905..708 990 100 Minus
3R 32079331 3R 31096955..31097070 131..16 580 100 Minus
3R 32079331 3R 31091686..31091774 708..620 445 100 Minus
Blast to na_te.dros performed 2014-11-27 14:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6801 43..125 127 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6709..6780 54..125 126 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6849 49..125 115 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2410 37..132 114 62.7 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 534..577 58..101 112 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6811..6904 36..129 110 57.4 Plus

BS07278.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:57 Download gff for BS07278.complete
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:18 Download gff for BS07278.complete
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 249..1138 16..905 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:02 Download gff for BS07278.complete
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 260..1138 24..902 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:57 Download gff for BS07278.complete
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 249..1138 16..905 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:11 Download gff for BS07278.complete
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 260..1138 24..902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:11 Download gff for BS07278.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31091369..31091562 709..902 100 <- Minus
3R 31091686..31091773 621..708 100 <- Minus
3R 31092055..31092543 132..620 100 <- Minus
3R 31096955..31097062 24..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:02 Download gff for BS07278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26917091..26917284 709..902 100 <- Minus
arm_3R 26917408..26917495 621..708 100 <- Minus
arm_3R 26917777..26918265 132..620 100 <- Minus
arm_3R 26922677..26922784 24..131 100   Minus

BS07278.pep Sequence

Translation from 16 to 903

> BS07278.pep
MFWILRRTGAANFFNSFNNNCSFSKSNSNGGNHNNSTQDKYVKRPPRKAY
GRLSAEADDAVSLGHKIDDPFDELDDFEMLAANSATAGCSSQVPGEANGN
VNVNGGSGSGLGSTGAAGCGNGNGNGNGSGNGNLSLLPCMDADCQGNYEV
ESALCELGLCQAKAKTSKDLGAGSTSTSKEINENTISRLHALAMADDDDD
YDESLTCNVCDRAFHCHRQLASHQQKKRHFGCSGCDSLFPSLMLLEHHKE
EFEHWSDEEIGRRVCCRRNRCDDDYFTDTDSFISDAESEDLERLL*

BS07278.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-PA 295 CG11317-PA 1..295 1..295 1601 100 Plus
CG11317-PB 298 CG11317-PB 1..298 1..295 1587 99 Plus