Clone Sequence Records
BS07284.3prime Sequence
925 bp (876 high quality bases) assembled on 2006-01-06
> BS07284.3prime
ATGGTCTAGAAAGCTTTTAGCTTAATTCGCTGCCATCCTTAATCTTTTGA
ATGAATGCACTTAATTCTTGCGCCGAATACGATTTCTTTCGGCTCTTCTT
CGGCGGCGCGGCTTCCATAGATGACGGTTCACGTTTGGTGAAGTGTCTGT
ACTCGGGCGAAATGGACTCCAGTTGCAGCAGTCTATTTTCCACTCGTTTG
ATTCTACTGAAAATGTTTTCCTCGTTGTCGGTGGTTAGACCCATGTACGA
TTCAATTGCCTGTAGTCGTGAATTGGGTAGCGATTTCCTCATTTCTTTGG
TTGGATCCGTTTGACCGTCACGCGATCCCATTAGTTTATTCAGTTCGAGT
TCGTAGTTGGGTCGCATTTCCATTTGCTGAGGTCCGCATCGGTTGTTTAC
TCGTCGGACTTTTAAATGGCAATTTGACTGCTCCTGCTTAATAATTGTGC
TCTGCGTTCGAGCGCAGGAATCGCTCAAGTTTTGGTCTGAGCTGACAAAA
GACGATTTGAAGTCAATTACATTTTGTGAGTTTATTTCGTCTCGTTTTCT
GTTGACAAAACATTCTAAACGCTTGGTTAACTCAGCGTCATTAACTCTAA
TTTGCACCAGAGTTCGCGGGACGTCATGTGACTCCTCAACTTTGCAGGGA
CAAGCGGCGTAGTTGAAGCCACTTTTCGATTTCTTAGGCCTGATGGACTC
CTTGTTCTCCTTCCATTCGCTGTCGTTATCGCCGTCGTAGATTTCCTTTT
TCCAGATGGGAACCCGAGTTTTTAGCTGGTCTATTGCAAAAGATACTGAT
TCTAAGGCCTCAGAACGATGTGGTGACGAGGCGGCTATAACTACACTGGC
TTCGCATACGGGCACTGTTCCCAATCGATGATATATGACTATGTGCTTCA
GATCGAGCCACTTAAATCGGAGATC
BS07284.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10238-PA | 1104 | CG10238-RA | 196..1104 | 925..17 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42503-RA | 1420 | CG42503-RA | 492..1400 | 925..17 | 4530 | 99.9 | Minus |
Mocs2-RA | 1420 | CG10238-RA | 492..1400 | 925..17 | 4530 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25126167..25126442 | 409..684 | 1380 | 100 | Plus |
3R | 32079331 | 3R | 25125834..25126104 | 140..410 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 25126567..25126807 | 685..925 | 1190 | 99.6 | Plus |
3R | 32079331 | 3R | 25125652..25125774 | 17..139 | 615 | 100 | Plus |
Y | 3667352 | Y | 3024146..3024268 | 17..139 | 570 | 97.6 | Plus |
Y | 3667352 | Y | 3024314..3024414 | 140..241 | 445 | 98 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:24:43 has no hits.
BS07284.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:12 Download gff for
BS07284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-PA | 196..1104 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:38 Download gff for
BS07284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-PA | 196..1104 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:51 Download gff for
BS07284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42503-RA | 492..1400 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:23 Download gff for
BS07284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mocs2-RA | 492..1400 | 17..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:23 Download gff for
BS07284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25125652..25125774 | 17..139 | 100 | <- | Plus |
3R | 25125834..25126102 | 140..408 | 100 | <- | Plus |
3R | 25126167..25126442 | 409..684 | 100 | <- | Plus |
3R | 25126567..25126807 | 685..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:51 Download gff for
BS07284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20951374..20951496 | 17..139 | 100 | <- | Plus |
arm_3R | 20951556..20951824 | 140..408 | 100 | <- | Plus |
arm_3R | 20951889..20952164 | 409..684 | 100 | <- | Plus |
arm_3R | 20952289..20952529 | 685..925 | 99 | | Plus |
BS07284.5prime Sequence
903 bp (839 high quality bases) assembled on 2006-01-06
> BS07284.5prime
GAAGTTATCAGTCGACATGGATCACGTGAAATTGGTAAACGACCCCATAG
ATATCGCTCATATCCATCAGTTGCTGGCCGATGAAGGCTGTGGAGCCTCA
TCCGTTTTCGTGGGCACTACGCGCGATAATTTTCAAGGGAAAAAGGTGCT
GTCATTGGCGTACGAGGCCTACGATAGCATGGCACTCAAGGAAATGAATA
AAATATGCTCAGATCTCCGATCTAAGTGGCTCGATCTGAAGCACATAGTC
ATATATCATCGATTGGGAACAGTGCCCGTATGCGAAGCCAGTGTAGTTAT
AGCCGCCTCGTCACCACATCGTTCTGAGGCCTTAGAATCAGTATCTTTTG
CAATAGACCAGCTAAAAACTCGGGTTCCCATCTGGAAAAAGGAAATCTAC
GACGGCGATAACGACAGCGAATGGAAGGAGAACAAGGAGTCCATCAGGCC
TAAGAAATCGAAAAGTGGCTTCAACTACGCCGCTTGTCCCTGCAAAGTTG
AGGAGTCACATGACGTCCCGCGAACTCTGGTGCAAATTAGAGTTAATGAC
GCTGAGTTAACCAAGCGTTTAGAATGTTTTGTCAACAGAAAACGAGACGA
AATAAACTCACAAAATGTAATTGACTTCAAATCGTCTTTTGTCAGCTCAG
ACCAAAACTTGAGCGATTCCTGCGCTCGAACGCAGAGCACAATTATTAAG
CAGGAGCAGTCAAATTGCCATTTAAAAGTCCGACGAGTAAACAACCGATG
CGGACCTCAGCAAATGGAAATGCGACCCAACTACGAACTCGAACTGAATA
AACTAATGGGATCGCGTGACGGTCAAACGGATCCAACCAAAGAAATGAGG
AAATCGCTACCCAATTCACGACTACAGGCAATTGAATCGTACATGGGTCT
AAC
BS07284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10238-PA | 1104 | CG10238-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42503-RA | 1420 | CG42503-RA | 296..1183 | 16..903 | 4440 | 100 | Plus |
Mocs2-RA | 1420 | CG10238-RA | 296..1183 | 16..903 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25126567..25126875 | 452..144 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 25126167..25126442 | 728..453 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 25125928..25126104 | 903..727 | 885 | 100 | Minus |
3R | 32079331 | 3R | 25126932..25127064 | 148..16 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:53:32 has no hits.
BS07284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:13 Download gff for
BS07284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-PA | 1..887 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:39 Download gff for
BS07284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-PA | 1..887 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:45:23 Download gff for
BS07284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42503-RA | 291..1183 | 8..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:43 Download gff for
BS07284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mocs2-RA | 291..1183 | 8..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:43 Download gff for
BS07284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25125928..25126102 | 729..903 | 100 | <- | Minus |
3R | 25126167..25126442 | 453..728 | 100 | <- | Minus |
3R | 25126567..25126873 | 146..452 | 100 | <- | Minus |
3R | 25126935..25127069 | 8..145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:45:23 Download gff for
BS07284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20951650..20951824 | 729..903 | 100 | <- | Minus |
arm_3R | 20951889..20952164 | 453..728 | 100 | <- | Minus |
arm_3R | 20952289..20952595 | 146..452 | 100 | <- | Minus |
arm_3R | 20952657..20952791 | 8..145 | 97 | | Minus |
BS07284.complete Sequence
1136 bp (1136 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635802
> BS07284.complete
GAAGTTATCAGTCGACATGGATCACGTGAAATTGGTAAACGACCCCATAG
ATATCGCTCATATCCATCAGTTGCTGGCCGATGAAGGCTGTGGAGCCTCA
TCCGTTTTCGTGGGCACTACGCGCGATAATTTTCAAGGGAAAAAGGTGCT
GTCATTGGCGTACGAGGCCTACGATAGCATGGCACTCAAGGAAATGAATA
AAATATGCTCAGATCTCCGATCTAAGTGGCTCGATCTGAAGCACATAGTC
ATATATCATCGATTGGGAACAGTGCCCGTATGCGAAGCCAGTGTAGTTAT
AGCCGCCTCGTCACCACATCGTTCTGAGGCCTTAGAATCAGTATCTTTTG
CAATAGACCAGCTAAAAACTCGGGTTCCCATCTGGAAAAAGGAAATCTAC
GACGGCGATAACGACAGCGAATGGAAGGAGAACAAGGAGTCCATCAGGCC
TAAGAAATCGAAAAGTGGCTTCAACTACGCCGCTTGTCCCTGCAAAGTTG
AGGAGTCACATGACGTCCCGCGAACTCTGGTGCAAATTAGAGTTAATGAC
GCTGAGTTAACCAAGCGTTTAGAATGTTTTGTCAACAGAAAACGAGACGA
AATAAACTCACAAAATGTAATTGACTTCAAATCGTCTTTTGTCAGCTCAG
ACCAAAACTTGAGCGATTCCTGCGCTCGAACGCAGAGCACAATTATTAAG
CAGGAGCAGTCAAATTGCCATTTAAAAGTCCGACGAGTAAACAACCGATG
CGGACCTCAGCAAATGGAAATGCGACCCAACTACGAACTCGAACTGAATA
AACTAATGGGATCGCGTGACGGTCAAACGGATCCAACCAAAGAAATGAGG
AAATCGCTACCCAATTCACGACTACAGGCAATTGAATCGTACATGGGTCT
AACCACCGACAACGAGGAAAACATTTTCAGTAGAATCAAACGAGTGGAAA
ATAGACTGCTGCAACTGGAGTCCATTTCGCCCGAGTACAGACACTTCACC
AAACGTGAACCGTCATCTATGGAAGCCGCGCCGCCGAAGAAGAGCCGAAA
GAAATCGTATTCGGCGCAAGAATTAAGTGCATTCATTCAAAAGATTAAGG
ATGGCAGCGAATTAAGCTAAAAGCTTTCTAGACCAT
BS07284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mocs2-RA | 1104 | CG10238-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42503-RA | 1420 | CG42503-RA | 296..1400 | 16..1120 | 5525 | 100 | Plus |
Mocs2-RA | 1420 | CG10238-RA | 296..1400 | 16..1120 | 5525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25126567..25126875 | 452..144 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 25126167..25126442 | 728..453 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 25125834..25126104 | 997..727 | 1355 | 100 | Minus |
3R | 32079331 | 3R | 25126932..25127064 | 148..16 | 665 | 100 | Minus |
3R | 32079331 | 3R | 25125652..25125774 | 1120..998 | 615 | 100 | Minus |
Y | 3667352 | Y | 3024146..3024268 | 1120..998 | 570 | 97.6 | Minus |
Y | 3667352 | Y | 3024314..3024414 | 997..896 | 445 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:54:12 has no hits.
BS07284.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:38 Download gff for
BS07284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-RA | 1..1104 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:55 Download gff for
BS07284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-RA | 278..1387 | 8..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:11 Download gff for
BS07284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42503-RA | 297..1398 | 17..1118 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:38 Download gff for
BS07284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-RA | 278..1387 | 8..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:27 Download gff for
BS07284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mocs2-RA | 297..1398 | 17..1118 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:27 Download gff for
BS07284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25126935..25127063 | 17..145 | 100 | | Minus |
3R | 25126567..25126873 | 146..452 | 100 | <- | Minus |
3R | 25125834..25126102 | 729..997 | 100 | <- | Minus |
3R | 25126167..25126442 | 453..728 | 100 | <- | Minus |
3R | 25125654..25125774 | 998..1118 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:11 Download gff for
BS07284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20951376..20951496 | 998..1118 | 100 | <- | Minus |
arm_3R | 20951556..20951824 | 729..997 | 100 | <- | Minus |
arm_3R | 20951889..20952164 | 453..728 | 100 | <- | Minus |
arm_3R | 20952289..20952595 | 146..452 | 100 | <- | Minus |
arm_3R | 20952657..20952785 | 17..145 | 100 | | Minus |
BS07284.pep Sequence
Translation from 16 to 1119
> BS07284.pep
MDHVKLVNDPIDIAHIHQLLADEGCGASSVFVGTTRDNFQGKKVLSLAYE
AYDSMALKEMNKICSDLRSKWLDLKHIVIYHRLGTVPVCEASVVIAASSP
HRSEALESVSFAIDQLKTRVPIWKKEIYDGDNDSEWKENKESIRPKKSKS
GFNYAACPCKVEESHDVPRTLVQIRVNDAELTKRLECFVNRKRDEINSQN
VIDFKSSFVSSDQNLSDSCARTQSTIIKQEQSNCHLKVRRVNNRCGPQQM
EMRPNYELELNKLMGSRDGQTDPTKEMRKSLPNSRLQAIESYMGLTTDNE
ENIFSRIKRVENRLLQLESISPEYRHFTKREPSSMEAAPPKKSRKKSYSA
QELSAFIQKIKDGSELS*
BS07284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mocs2-PA | 367 | CG10238-PA | 1..367 | 1..367 | 1895 | 100 | Plus |