Clone BS07285 Report

Search the DGRC for BS07285

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptGNBP2-RC
Protein status:BS07285.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07285.3prime Sequence

756 bp (755 high quality bases) assembled on 2006-01-06

> BS07285.3prime
ATGGTCTAGAAAGCTTCTACTCACAGGGGAAAAGCCAATCCCCCTTGGGC
AACTTGGCGCGCACGACGATTTTGCCAAATTTGAAACTGAAAGAGTTTCT
GGTGTGAATTTGGGCGGAGAAAACTGGAGGCTTGATGCTATAGAAGATGC
CGTGCGCAATGTTGCACTCCTGTTCCGGACTTTCGACGGCCGTACAGCGA
TCTCCCAGTTTGAAGCTGCCATCGGTGACCTCGGTGGCGATAGTGGGAAC
GATATGGAGTTCGCCTTCCTTCACAAAGCAGTTGCGTGCGGCATCGTCGA
AGGCCACCAGCTCCTCCTCCACGTGGTACATGCGCTGTCGGATGTCATGC
TTCCAGGTGGTCTTGTTCAGCTGCGCCTCCGAGAAGTTGTCCTCAAAGAT
CAGTTCACCCTGGCAAGTATGGCGTCCATTGCTCACTATCGTTTGGGCGG
CCTTGCAGCGTTTGGCTTGCTGTGCAGGAGCTAGGTATGCCTGGCACTCG
CCCTCTCCTGTAAGGAATGTTATGCCTCGCGAGCTAGAGTCTTTGGTGGT
CAGTAGCCGGGTGTTTATGATCACCCTGGTTTCACTCTTTTCGAAGATTT
CCTCATTGAACTGCACCAGCATTGATATCTGCAGCTTGTCGTTGTTCTGC
AGACTCATCTTTTGCTTGGAGACCCAACTTCCGTTCACTGCCTCCGTGAT
GTAGTCCATTAGAGCCGGGCAGGTGTCGTCAATTTGGAACATGTCGACTG
ATAACT

BS07285.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4144-PC 726 GNBP2-RC 1..726 742..17 3630 100 Minus
CG4144-PB 1386 GNBP2-RB 152..871 744..25 3600 100 Minus
CG4144-PA 1299 GNBP2-RA 65..784 744..25 3600 100 Minus
CG4144-PD 1233 GNBP2-RD 1..718 742..25 3590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-RD 1341 CG4144-RD 63..782 744..25 3600 100 Minus
GNBP2-RA 1439 CG4144-RA 161..880 744..25 3600 100 Minus
GNBP2-RB 1501 CG4144-RB 223..942 744..25 3600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18674545..18674950 339..744 2030 100 Plus
3L 28110227 3L 18674161..18674483 17..339 1615 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:25:20 has no hits.

BS07285.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:14 Download gff for BS07285.3prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-PC 1..726 17..742 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:41 Download gff for BS07285.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4144-PC 1..726 17..742 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:58 Download gff for BS07285.3prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 82..812 17..747 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:28 Download gff for BS07285.3prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 220..942 25..747 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:28 Download gff for BS07285.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18674161..18674482 17..338 100 <- Plus
3L 18674545..18674953 339..747 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:58 Download gff for BS07285.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18667261..18667582 17..338 100 <- Plus
arm_3L 18667645..18668053 339..747 99   Plus

BS07285.5prime Sequence

756 bp (755 high quality bases) assembled on 2006-01-06

> BS07285.5prime
GAAGTTATCAGTCGACATGTTCCAAATTGACGACACCTGCCCGGCTCTAA
TGGACTACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAG
ATGAGTCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTT
CAATGAGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCC
GGCTACTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACA
GGAGAGGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACG
CTGCAAGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGG
GTGAACTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACC
ACCTGGAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCT
GGTGGCCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAAC
TCCATATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAA
CTGGGAGATCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAACAT
TGCGCACGGCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCCAAA
TTCACACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGC
GCCAAGTTGCCCAAGGGGGATTGGCTTTTCCCCTGTGAGTAGAAGCTTTC
TAGACC

BS07285.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4144-PC 726 GNBP2-RC 1..726 17..742 3630 100 Plus
CG4144-PB 1386 GNBP2-RB 152..871 15..734 3600 100 Plus
CG4144-PA 1299 GNBP2-RA 65..784 15..734 3600 100 Plus
CG4144-PD 1233 GNBP2-RD 1..718 17..734 3590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-RD 1341 CG4144-RD 63..782 15..734 3600 100 Plus
GNBP2-RA 1439 CG4144-RA 161..880 15..734 3600 100 Plus
GNBP2-RB 1501 CG4144-RB 223..942 15..734 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18674545..18674950 420..15 2030 100 Minus
3L 28110227 3L 18674161..18674483 742..420 1615 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:00:33 has no hits.

BS07285.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:15 Download gff for BS07285.5prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-PC 1..726 17..742 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:42 Download gff for BS07285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4144-PC 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:46:25 Download gff for BS07285.5prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 82..812 12..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:25 Download gff for BS07285.5prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 220..942 12..734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:25 Download gff for BS07285.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18674161..18674482 421..742 100 <- Minus
3L 18674545..18674953 12..420 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:46:25 Download gff for BS07285.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18667261..18667582 421..742 100 <- Minus
arm_3L 18667645..18668053 12..420 99   Minus

BS07285.complete Sequence

758 bp (758 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635803

> BS07285.complete
GAAGTTATCAGTCGACATGTTCCAAATTGACGACACCTGCCCGGCTCTAA
TGGACTACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAG
ATGAGTCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTT
CAATGAGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCC
GGCTACTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACA
GGAGAGGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACG
CTGCAAGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGG
GTGAACTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACC
ACCTGGAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCT
GGTGGCCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAAC
TCCATATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAA
CTGGGAGATCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAACAT
TGCGCACGGCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCCAAA
TTCACACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGC
GCCAAGTTGCCCAAGGGGGATTGGCTTTTCCCCTGTGAGTAGAAGCTTTC
TAGACCAT

BS07285.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-RA 1299 CG4144-PA 65..784 15..734 3600 100 Plus
GNBP2-RB 1386 CG4144-PB 152..871 15..734 3600 100 Plus
GNBP2-RD 1233 CG4144-PD 1..718 17..734 3590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-RD 1341 CG4144-RD 63..782 15..734 3600 100 Plus
GNBP2-RA 1439 CG4144-RA 161..880 15..734 3600 100 Plus
GNBP2-RB 1501 CG4144-RB 223..942 15..734 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18674545..18674950 420..15 2030 100 Minus
3L 28110227 3L 18674161..18674483 742..420 1615 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:50:12 has no hits.

BS07285.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:54 Download gff for BS07285.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:05 Download gff for BS07285.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 82..812 12..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:55 Download gff for BS07285.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 92..812 22..742 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:54 Download gff for BS07285.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 82..812 12..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:40 Download gff for BS07285.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 230..942 22..734 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:40 Download gff for BS07285.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18674161..18674482 421..742 100 <- Minus
3L 18674545..18674943 22..420 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:55 Download gff for BS07285.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18667261..18667582 421..742 100 <- Minus
arm_3L 18667645..18668043 22..420 100   Minus

BS07285.pep Sequence

Translation from 16 to 741

> BS07285.pep
MFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEIF
EKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAAQ
TIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFDD
AARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGIF
YSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPCE*

BS07285.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-PD 410 CG4144-PD 1..239 1..239 1254 100 Plus
GNBP2-PA 432 CG4144-PA 23..261 1..239 1254 100 Plus
GNBP2-PB 461 CG4144-PB 52..290 1..239 1254 100 Plus
GNBP1-PA 492 CG6895-PA 70..303 15..239 231 28.3 Plus