Clone Sequence Records
BS07285.3prime Sequence
756 bp (755 high quality bases) assembled on 2006-01-06
> BS07285.3prime
ATGGTCTAGAAAGCTTCTACTCACAGGGGAAAAGCCAATCCCCCTTGGGC
AACTTGGCGCGCACGACGATTTTGCCAAATTTGAAACTGAAAGAGTTTCT
GGTGTGAATTTGGGCGGAGAAAACTGGAGGCTTGATGCTATAGAAGATGC
CGTGCGCAATGTTGCACTCCTGTTCCGGACTTTCGACGGCCGTACAGCGA
TCTCCCAGTTTGAAGCTGCCATCGGTGACCTCGGTGGCGATAGTGGGAAC
GATATGGAGTTCGCCTTCCTTCACAAAGCAGTTGCGTGCGGCATCGTCGA
AGGCCACCAGCTCCTCCTCCACGTGGTACATGCGCTGTCGGATGTCATGC
TTCCAGGTGGTCTTGTTCAGCTGCGCCTCCGAGAAGTTGTCCTCAAAGAT
CAGTTCACCCTGGCAAGTATGGCGTCCATTGCTCACTATCGTTTGGGCGG
CCTTGCAGCGTTTGGCTTGCTGTGCAGGAGCTAGGTATGCCTGGCACTCG
CCCTCTCCTGTAAGGAATGTTATGCCTCGCGAGCTAGAGTCTTTGGTGGT
CAGTAGCCGGGTGTTTATGATCACCCTGGTTTCACTCTTTTCGAAGATTT
CCTCATTGAACTGCACCAGCATTGATATCTGCAGCTTGTCGTTGTTCTGC
AGACTCATCTTTTGCTTGGAGACCCAACTTCCGTTCACTGCCTCCGTGAT
GTAGTCCATTAGAGCCGGGCAGGTGTCGTCAATTTGGAACATGTCGACTG
ATAACT
BS07285.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4144-PC | 726 | GNBP2-RC | 1..726 | 742..17 | 3630 | 100 | Minus |
CG4144-PB | 1386 | GNBP2-RB | 152..871 | 744..25 | 3600 | 100 | Minus |
CG4144-PA | 1299 | GNBP2-RA | 65..784 | 744..25 | 3600 | 100 | Minus |
CG4144-PD | 1233 | GNBP2-RD | 1..718 | 742..25 | 3590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GNBP2-RD | 1341 | CG4144-RD | 63..782 | 744..25 | 3600 | 100 | Minus |
GNBP2-RA | 1439 | CG4144-RA | 161..880 | 744..25 | 3600 | 100 | Minus |
GNBP2-RB | 1501 | CG4144-RB | 223..942 | 744..25 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18674545..18674950 | 339..744 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 18674161..18674483 | 17..339 | 1615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:25:20 has no hits.
BS07285.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:14 Download gff for
BS07285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-PC | 1..726 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:41 Download gff for
BS07285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4144-PC | 1..726 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:58 Download gff for
BS07285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 82..812 | 17..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:28 Download gff for
BS07285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RB | 220..942 | 25..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:28 Download gff for
BS07285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18674161..18674482 | 17..338 | 100 | <- | Plus |
3L | 18674545..18674953 | 339..747 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:58 Download gff for
BS07285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18667261..18667582 | 17..338 | 100 | <- | Plus |
arm_3L | 18667645..18668053 | 339..747 | 99 | | Plus |
BS07285.5prime Sequence
756 bp (755 high quality bases) assembled on 2006-01-06
> BS07285.5prime
GAAGTTATCAGTCGACATGTTCCAAATTGACGACACCTGCCCGGCTCTAA
TGGACTACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAG
ATGAGTCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTT
CAATGAGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCC
GGCTACTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACA
GGAGAGGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACG
CTGCAAGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGG
GTGAACTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACC
ACCTGGAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCT
GGTGGCCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAAC
TCCATATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAA
CTGGGAGATCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAACAT
TGCGCACGGCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCCAAA
TTCACACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGC
GCCAAGTTGCCCAAGGGGGATTGGCTTTTCCCCTGTGAGTAGAAGCTTTC
TAGACC
BS07285.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4144-PC | 726 | GNBP2-RC | 1..726 | 17..742 | 3630 | 100 | Plus |
CG4144-PB | 1386 | GNBP2-RB | 152..871 | 15..734 | 3600 | 100 | Plus |
CG4144-PA | 1299 | GNBP2-RA | 65..784 | 15..734 | 3600 | 100 | Plus |
CG4144-PD | 1233 | GNBP2-RD | 1..718 | 17..734 | 3590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GNBP2-RD | 1341 | CG4144-RD | 63..782 | 15..734 | 3600 | 100 | Plus |
GNBP2-RA | 1439 | CG4144-RA | 161..880 | 15..734 | 3600 | 100 | Plus |
GNBP2-RB | 1501 | CG4144-RB | 223..942 | 15..734 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18674545..18674950 | 420..15 | 2030 | 100 | Minus |
3L | 28110227 | 3L | 18674161..18674483 | 742..420 | 1615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:00:33 has no hits.
BS07285.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:15 Download gff for
BS07285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-PC | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:42 Download gff for
BS07285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4144-PC | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:46:25 Download gff for
BS07285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 82..812 | 12..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:25 Download gff for
BS07285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RB | 220..942 | 12..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:25 Download gff for
BS07285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18674161..18674482 | 421..742 | 100 | <- | Minus |
3L | 18674545..18674953 | 12..420 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:46:25 Download gff for
BS07285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18667261..18667582 | 421..742 | 100 | <- | Minus |
arm_3L | 18667645..18668053 | 12..420 | 99 | | Minus |
BS07285.complete Sequence
758 bp (758 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635803
> BS07285.complete
GAAGTTATCAGTCGACATGTTCCAAATTGACGACACCTGCCCGGCTCTAA
TGGACTACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAG
ATGAGTCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTT
CAATGAGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCC
GGCTACTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACA
GGAGAGGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACG
CTGCAAGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGG
GTGAACTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACC
ACCTGGAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCT
GGTGGCCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAAC
TCCATATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAA
CTGGGAGATCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAACAT
TGCGCACGGCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCCAAA
TTCACACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGC
GCCAAGTTGCCCAAGGGGGATTGGCTTTTCCCCTGTGAGTAGAAGCTTTC
TAGACCAT
BS07285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GNBP2-RA | 1299 | CG4144-PA | 65..784 | 15..734 | 3600 | 100 | Plus |
GNBP2-RB | 1386 | CG4144-PB | 152..871 | 15..734 | 3600 | 100 | Plus |
GNBP2-RD | 1233 | CG4144-PD | 1..718 | 17..734 | 3590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GNBP2-RD | 1341 | CG4144-RD | 63..782 | 15..734 | 3600 | 100 | Plus |
GNBP2-RA | 1439 | CG4144-RA | 161..880 | 15..734 | 3600 | 100 | Plus |
GNBP2-RB | 1501 | CG4144-RB | 223..942 | 15..734 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18674545..18674950 | 420..15 | 2030 | 100 | Minus |
3L | 28110227 | 3L | 18674161..18674483 | 742..420 | 1615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:50:12 has no hits.
BS07285.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:54 Download gff for
BS07285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:05 Download gff for
BS07285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 82..812 | 12..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:55 Download gff for
BS07285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 92..812 | 22..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:54 Download gff for
BS07285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 82..812 | 12..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:40 Download gff for
BS07285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RB | 230..942 | 22..734 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:40 Download gff for
BS07285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18674161..18674482 | 421..742 | 100 | <- | Minus |
3L | 18674545..18674943 | 22..420 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:55 Download gff for
BS07285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18667261..18667582 | 421..742 | 100 | <- | Minus |
arm_3L | 18667645..18668043 | 22..420 | 100 | | Minus |
BS07285.pep Sequence
Translation from 16 to 741
> BS07285.pep
MFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEIF
EKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAAQ
TIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFDD
AARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGIF
YSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPCE*
BS07285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GNBP2-PD | 410 | CG4144-PD | 1..239 | 1..239 | 1254 | 100 | Plus |
GNBP2-PA | 432 | CG4144-PA | 23..261 | 1..239 | 1254 | 100 | Plus |
GNBP2-PB | 461 | CG4144-PB | 52..290 | 1..239 | 1254 | 100 | Plus |
GNBP1-PA | 492 | CG6895-PA | 70..303 | 15..239 | 231 | 28.3 | Plus |