Clone Sequence Records
BS07290.3prime Sequence
892 bp (830 high quality bases) assembled on 2006-01-06
> BS07290.3prime
ATGGTCTAGAAAGCTTTCATTTATAAAAATCATAATTAAGTGCGCTCTGG
CACTCTTCTAAAACATCGGATGGCTGGCTTGCTTGCTTATCCAAATTATT
TTCAAATGTTTCCTGAACTTCTGAACTCTCCACTACTCTATCGTTTTCTT
GACACTCAGTAATTTGTTGGATTCCCAAGTTATTTGATTGTTTTGCTGTG
GGTCGGGAAGTAGTTGGAGCTGAATCGTGCGCCAGAGATTGACTCATTGT
GGATTGCAGGCATAAGGGACTGCCACATAGTCCGACCACGGAGGCATTCT
CCACATCGGATTCTCCTCCAGAGGTATGGTAAGCTGGCCTAATCCCCAAA
CCGATGGGCACAGCGCGACAATTTGTGCCACTAATTGAAGGTTGAGATCC
TCCCTCCTCATCCTTCACCACATTCCCTTTTACGTCTGTCACAGAAGTGC
TGCTGCTATTCCCGGAAAGAACTGTTGTTTTCGGGGTCTCAGGATCATTC
GCTTTTTGATCCAATCTTAATGGTGCATCGGGCAACACCAAAGTACTTTG
AATGGGTTTGGTATAGGTCCATCCCGGTGATCCGAATAGTATTTGCACGT
TATTGTCTAGTCCCAAACGACTTTCTGAACATCTTAGGTCGATACTGGTG
GTGGCCATTTCTGTTTCTTTATACTTCCTGGCTCGAGATAGTCGACGGTT
GGGGATTCGTTTCTTCTTGACAACGCGCTTTGTGTTGGTGCGCATCCGCT
TGCGCATCTTGGTCATCTCAGTTCCAGACAGAGAGTCCTCACTCAAGATC
TTGCTGACCGATTTCCAAGGATCCAAGCGCCCGACAGGTCGCTTTTGACG
CGCATTCTGCGCAGCTCGCCGATGTGGTCTACCAGGATTGCC
BS07290.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5538-PA | 1164 | CG5538-RA | 289..1164 | 892..17 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5538-RA | 1328 | CG5538-RA | 373..1248 | 892..17 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12448132..12448966 | 851..17 | 4175 | 100 | Minus |
3R | 32079331 | 3R | 12448025..12448066 | 892..851 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 15:14:09 has no hits.
BS07290.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:22 Download gff for
BS07290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-PA | 289..1164 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:52 Download gff for
BS07290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-PA | 289..1164 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:03:52 Download gff for
BS07290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 373..1253 | 9..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:42:50 Download gff for
BS07290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 373..1253 | 9..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:42:50 Download gff for
BS07290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12448025..12448066 | 851..892 | 100 | -> | Minus |
3R | 12448133..12448971 | 9..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:03:52 Download gff for
BS07290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8273747..8273788 | 851..892 | 100 | -> | Minus |
arm_3R | 8273855..8274693 | 9..850 | 99 | | Minus |
BS07290.5prime Sequence
800 bp (799 high quality bases) assembled on 2006-01-06
> BS07290.5prime
GAAGTTATCAGTCGACATGGACGAATTTAGAGTACCCAAAAAGGTTAACC
GTAACGTTTTCAAGGCCATTAGCATTCTTCAATCTTCCCGAACCGATTTT
GTCTGCGCTAATGCAATCGTCGACCAGGTAAAGTTCCAAATGCGGAACCG
CATTCCGGTCGAGCATATAGATGAGGCCATAAAACAGTCGCTGGCCAACT
TGACCATGCTGGGCATAGTGCGGCGTCTGGGATCGTCTAAGTATTCGCTT
AGCACCATAGTGTATGGCCGGTTGGGAATGCCCAATCCCATTGCACATCC
GCCGGGCAATCCTGGTAGACCACATCGGCGAGCTGCGCAGAATGCGCGTC
AAAAGCGACCTGTCGGGCGCTTGGATCCTTGGAAATCGGTCAGCAAGATC
TTGAGTGAGGACTCTCTGTCTGGAACTGAGATGACCAAGATGCGCAAGCG
GATGCGCACCAACACAAAGCGCGTTGTCAAGAAGAAACGAATCCCCAACC
GTCGACTATCTCGAGCCAGGAAGTATAAAGAAACAGAAATGGCCACCACC
AGTATCGACCTAAGATGTTCAGAAAGTCGTTTGGGACTAGACAATAACGT
GCAAATACTATTCGGATCACCGGGATGGACCTATACCAAACCCATTCAAA
GTACTTTGGTGTTGCCCGATGCACCATTAAGATTGGATCAAAAAGCGAAT
GATCCTGAGACCCCGAANACAACAGTTCTTTCCGGGAATAGCAGCAGCAC
TTCTGTGACAGACGTAAAAGGGAATGTGGTGAAGGATGAGGAGGGAGGAT
BS07290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5538-PA | 1164 | CG5538-RA | 1..784 | 17..800 | 3901 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5538-RA | 1328 | CG5538-RA | 85..868 | 17..800 | 3909 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12448132..12448586 | 346..800 | 2264 | 99.8 | Plus |
3R | 32079331 | 3R | 12447737..12448066 | 17..346 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:36:33 has no hits.
BS07290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:24 Download gff for
BS07290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-PA | 1..784 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:53 Download gff for
BS07290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-PA | 1..784 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:14 Download gff for
BS07290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 78..868 | 8..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:56 Download gff for
BS07290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 78..868 | 8..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:56 Download gff for
BS07290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12447730..12448066 | 8..346 | 98 | -> | Plus |
3R | 12448133..12448586 | 347..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:14 Download gff for
BS07290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8273452..8273788 | 8..346 | 98 | -> | Plus |
arm_3R | 8273855..8274308 | 347..800 | 99 | | Plus |
BS07290.complete Sequence
1196 bp (1196 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635805
> BS07290.complete
GAAGTTATCAGTCGACATGGACGAATTTAGAGTACCCAAAAAGGTTAACC
GTAACGTTTTCAAGGCCATTAGCATTCTTCAATCTTCCCGAACCGATTTT
GTCTGCGCTAATGCAATCGTCGACCAGGTAAAGTTCCAAATGCGGAACCG
CATTCCGGTCGAGCATATAGATGAGGCCATAAAACAGTCGCTGGCCAACT
TGACCATGCTGGGCATAGTGCGGCGTCTGGGATCGTCTAAGTATTCGCTT
AGCACCATAGTGTATGGCCGGTTGGGAATGCCCAATCCCATTGCACATCC
GCCGGGCAATCCTGGTAGACCACATCGGCGAGCTGCGCAGAATGCGCGTC
AAAAGCGACCTGTCGGGCGCTTGGATCCTTGGAAATCGGTCAGCAAGATC
TTGAGTGAGGACTCTCTGTCTGGAACTGAGATGACCAAGATGCGCAAGCG
GATGCGCACCAACACAAAGCGCGTTGTCAAGAAGAAACGAATCCCCAACC
GTCGACTATCTCGAGCCAGGAAGTATAAAGAAACAGAAATGGCCACCACC
AGTATCGACCTAAGATGTTCAGAAAGTCGTTTGGGACTAGACAATAACGT
GCAAATACTATTCGGATCACCGGGATGGACCTATACCAAACCCATTCAAA
GTACTTTGGTGTTGCCCGATGCACCATTAAGATTGGATCAAAAAGCGAAT
GATCCTGAGACCCCGAAAACAACAGTTCTTTCCGGGAATAGCAGCAGCAC
TTCTGTGACAGACGTAAAAGGGAATGTGGTGAAGGATGAGGAGGGAGGAT
CTCAACCTTCAATTAGTGGCACAAATTGTCGCGCTGTGCCCATCGGTTTG
GGGATTAGGCCAGCTTACCATACCTCTGGAGGAGAATCCGATGTGGAGAA
TGCCTCCGTGGTCGGACTATGTGGCAGTCCCTTATGCCTGCAATCCACAA
TGAGTCAATCTCTGGCGCACGATTCAGCTCCAACTACTTCCCGACCCACA
GCAAAACAATCAAATAACTTGGGAATCCAACAAATTACTGAGTGTCAAGA
AAACGATAGAGTAGTGGAGAGTTCAGAAGTTCAGGAAACATTTGAAAATA
ATTTGGATAAGCAAGCAAGCCAGCCATCCGATGTTTTAGAAGAGTGCCAG
AGCGCACTTAATTATGATTTTTATAAATGAAAGCTTTCTAGACCAT
BS07290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5538-RA | 1164 | CG5538-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5538-RA | 1328 | CG5538-RA | 85..1248 | 17..1180 | 5820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12448132..12448966 | 346..1180 | 4175 | 100 | Plus |
3R | 32079331 | 3R | 12447737..12448066 | 17..346 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:50:29 has no hits.
BS07290.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:40 Download gff for
BS07290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 1..1164 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:46 Download gff for
BS07290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 78..1253 | 8..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:05 Download gff for
BS07290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 85..1247 | 17..1179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:40 Download gff for
BS07290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 78..1253 | 8..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:47 Download gff for
BS07290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 85..1247 | 17..1179 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:47 Download gff for
BS07290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12447737..12448066 | 17..346 | 100 | -> | Plus |
3R | 12448133..12448965 | 347..1179 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:05 Download gff for
BS07290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8273459..8273788 | 17..346 | 100 | -> | Plus |
arm_3R | 8273855..8274687 | 347..1179 | 100 | | Plus |
BS07290.pep Sequence
Translation from 16 to 1179
> BS07290.pep
MDEFRVPKKVNRNVFKAISILQSSRTDFVCANAIVDQVKFQMRNRIPVEH
IDEAIKQSLANLTMLGIVRRLGSSKYSLSTIVYGRLGMPNPIAHPPGNPG
RPHRRAAQNARQKRPVGRLDPWKSVSKILSEDSLSGTEMTKMRKRMRTNT
KRVVKKKRIPNRRLSRARKYKETEMATTSIDLRCSESRLGLDNNVQILFG
SPGWTYTKPIQSTLVLPDAPLRLDQKANDPETPKTTVLSGNSSSTSVTDV
KGNVVKDEEGGSQPSISGTNCRAVPIGLGIRPAYHTSGGESDVENASVVG
LCGSPLCLQSTMSQSLAHDSAPTTSRPTAKQSNNLGIQQITECQENDRVV
ESSEVQETFENNLDKQASQPSDVLEECQSALNYDFYK*
BS07290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5538-PA | 387 | CG5538-PA | 1..387 | 1..387 | 1985 | 100 | Plus |