Clone BS07290 Report

Search the DGRC for BS07290

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG5538-RA
Protein status:BS07290.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07290.3prime Sequence

892 bp (830 high quality bases) assembled on 2006-01-06

> BS07290.3prime
ATGGTCTAGAAAGCTTTCATTTATAAAAATCATAATTAAGTGCGCTCTGG
CACTCTTCTAAAACATCGGATGGCTGGCTTGCTTGCTTATCCAAATTATT
TTCAAATGTTTCCTGAACTTCTGAACTCTCCACTACTCTATCGTTTTCTT
GACACTCAGTAATTTGTTGGATTCCCAAGTTATTTGATTGTTTTGCTGTG
GGTCGGGAAGTAGTTGGAGCTGAATCGTGCGCCAGAGATTGACTCATTGT
GGATTGCAGGCATAAGGGACTGCCACATAGTCCGACCACGGAGGCATTCT
CCACATCGGATTCTCCTCCAGAGGTATGGTAAGCTGGCCTAATCCCCAAA
CCGATGGGCACAGCGCGACAATTTGTGCCACTAATTGAAGGTTGAGATCC
TCCCTCCTCATCCTTCACCACATTCCCTTTTACGTCTGTCACAGAAGTGC
TGCTGCTATTCCCGGAAAGAACTGTTGTTTTCGGGGTCTCAGGATCATTC
GCTTTTTGATCCAATCTTAATGGTGCATCGGGCAACACCAAAGTACTTTG
AATGGGTTTGGTATAGGTCCATCCCGGTGATCCGAATAGTATTTGCACGT
TATTGTCTAGTCCCAAACGACTTTCTGAACATCTTAGGTCGATACTGGTG
GTGGCCATTTCTGTTTCTTTATACTTCCTGGCTCGAGATAGTCGACGGTT
GGGGATTCGTTTCTTCTTGACAACGCGCTTTGTGTTGGTGCGCATCCGCT
TGCGCATCTTGGTCATCTCAGTTCCAGACAGAGAGTCCTCACTCAAGATC
TTGCTGACCGATTTCCAAGGATCCAAGCGCCCGACAGGTCGCTTTTGACG
CGCATTCTGCGCAGCTCGCCGATGTGGTCTACCAGGATTGCC

BS07290.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5538-PA 1164 CG5538-RA 289..1164 892..17 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5538-RA 1328 CG5538-RA 373..1248 892..17 4380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12448132..12448966 851..17 4175 100 Minus
3R 32079331 3R 12448025..12448066 892..851 210 100 Minus
Blast to na_te.dros performed on 2015-02-08 15:14:09 has no hits.

BS07290.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:22 Download gff for BS07290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5538-PA 289..1164 17..892 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:52 Download gff for BS07290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5538-PA 289..1164 17..892 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:03:52 Download gff for BS07290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 373..1253 9..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:42:50 Download gff for BS07290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 373..1253 9..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:42:50 Download gff for BS07290.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12448025..12448066 851..892 100 -> Minus
3R 12448133..12448971 9..850 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:03:52 Download gff for BS07290.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8273747..8273788 851..892 100 -> Minus
arm_3R 8273855..8274693 9..850 99   Minus

BS07290.5prime Sequence

800 bp (799 high quality bases) assembled on 2006-01-06

> BS07290.5prime
GAAGTTATCAGTCGACATGGACGAATTTAGAGTACCCAAAAAGGTTAACC
GTAACGTTTTCAAGGCCATTAGCATTCTTCAATCTTCCCGAACCGATTTT
GTCTGCGCTAATGCAATCGTCGACCAGGTAAAGTTCCAAATGCGGAACCG
CATTCCGGTCGAGCATATAGATGAGGCCATAAAACAGTCGCTGGCCAACT
TGACCATGCTGGGCATAGTGCGGCGTCTGGGATCGTCTAAGTATTCGCTT
AGCACCATAGTGTATGGCCGGTTGGGAATGCCCAATCCCATTGCACATCC
GCCGGGCAATCCTGGTAGACCACATCGGCGAGCTGCGCAGAATGCGCGTC
AAAAGCGACCTGTCGGGCGCTTGGATCCTTGGAAATCGGTCAGCAAGATC
TTGAGTGAGGACTCTCTGTCTGGAACTGAGATGACCAAGATGCGCAAGCG
GATGCGCACCAACACAAAGCGCGTTGTCAAGAAGAAACGAATCCCCAACC
GTCGACTATCTCGAGCCAGGAAGTATAAAGAAACAGAAATGGCCACCACC
AGTATCGACCTAAGATGTTCAGAAAGTCGTTTGGGACTAGACAATAACGT
GCAAATACTATTCGGATCACCGGGATGGACCTATACCAAACCCATTCAAA
GTACTTTGGTGTTGCCCGATGCACCATTAAGATTGGATCAAAAAGCGAAT
GATCCTGAGACCCCGAANACAACAGTTCTTTCCGGGAATAGCAGCAGCAC
TTCTGTGACAGACGTAAAAGGGAATGTGGTGAAGGATGAGGAGGGAGGAT

BS07290.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5538-PA 1164 CG5538-RA 1..784 17..800 3901 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5538-RA 1328 CG5538-RA 85..868 17..800 3909 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12448132..12448586 346..800 2264 99.8 Plus
3R 32079331 3R 12447737..12448066 17..346 1650 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:36:33 has no hits.

BS07290.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:24 Download gff for BS07290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5538-PA 1..784 17..800 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:53 Download gff for BS07290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5538-PA 1..784 17..800 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:14 Download gff for BS07290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 78..868 8..800 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:56 Download gff for BS07290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 78..868 8..800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:56 Download gff for BS07290.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12447730..12448066 8..346 98 -> Plus
3R 12448133..12448586 347..800 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:14 Download gff for BS07290.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8273452..8273788 8..346 98 -> Plus
arm_3R 8273855..8274308 347..800 99   Plus

BS07290.complete Sequence

1196 bp (1196 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635805

> BS07290.complete
GAAGTTATCAGTCGACATGGACGAATTTAGAGTACCCAAAAAGGTTAACC
GTAACGTTTTCAAGGCCATTAGCATTCTTCAATCTTCCCGAACCGATTTT
GTCTGCGCTAATGCAATCGTCGACCAGGTAAAGTTCCAAATGCGGAACCG
CATTCCGGTCGAGCATATAGATGAGGCCATAAAACAGTCGCTGGCCAACT
TGACCATGCTGGGCATAGTGCGGCGTCTGGGATCGTCTAAGTATTCGCTT
AGCACCATAGTGTATGGCCGGTTGGGAATGCCCAATCCCATTGCACATCC
GCCGGGCAATCCTGGTAGACCACATCGGCGAGCTGCGCAGAATGCGCGTC
AAAAGCGACCTGTCGGGCGCTTGGATCCTTGGAAATCGGTCAGCAAGATC
TTGAGTGAGGACTCTCTGTCTGGAACTGAGATGACCAAGATGCGCAAGCG
GATGCGCACCAACACAAAGCGCGTTGTCAAGAAGAAACGAATCCCCAACC
GTCGACTATCTCGAGCCAGGAAGTATAAAGAAACAGAAATGGCCACCACC
AGTATCGACCTAAGATGTTCAGAAAGTCGTTTGGGACTAGACAATAACGT
GCAAATACTATTCGGATCACCGGGATGGACCTATACCAAACCCATTCAAA
GTACTTTGGTGTTGCCCGATGCACCATTAAGATTGGATCAAAAAGCGAAT
GATCCTGAGACCCCGAAAACAACAGTTCTTTCCGGGAATAGCAGCAGCAC
TTCTGTGACAGACGTAAAAGGGAATGTGGTGAAGGATGAGGAGGGAGGAT
CTCAACCTTCAATTAGTGGCACAAATTGTCGCGCTGTGCCCATCGGTTTG
GGGATTAGGCCAGCTTACCATACCTCTGGAGGAGAATCCGATGTGGAGAA
TGCCTCCGTGGTCGGACTATGTGGCAGTCCCTTATGCCTGCAATCCACAA
TGAGTCAATCTCTGGCGCACGATTCAGCTCCAACTACTTCCCGACCCACA
GCAAAACAATCAAATAACTTGGGAATCCAACAAATTACTGAGTGTCAAGA
AAACGATAGAGTAGTGGAGAGTTCAGAAGTTCAGGAAACATTTGAAAATA
ATTTGGATAAGCAAGCAAGCCAGCCATCCGATGTTTTAGAAGAGTGCCAG
AGCGCACTTAATTATGATTTTTATAAATGAAAGCTTTCTAGACCAT

BS07290.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5538-RA 1164 CG5538-PA 1..1164 17..1180 5820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5538-RA 1328 CG5538-RA 85..1248 17..1180 5820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12448132..12448966 346..1180 4175 100 Plus
3R 32079331 3R 12447737..12448066 17..346 1650 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:50:29 has no hits.

BS07290.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:40 Download gff for BS07290.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 1..1164 17..1180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:46 Download gff for BS07290.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 78..1253 8..1188 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:05 Download gff for BS07290.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 85..1247 17..1179 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:40 Download gff for BS07290.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 78..1253 8..1188 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:47 Download gff for BS07290.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 85..1247 17..1179 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:47 Download gff for BS07290.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12447737..12448066 17..346 100 -> Plus
3R 12448133..12448965 347..1179 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:05 Download gff for BS07290.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8273459..8273788 17..346 100 -> Plus
arm_3R 8273855..8274687 347..1179 100   Plus

BS07290.pep Sequence

Translation from 16 to 1179

> BS07290.pep
MDEFRVPKKVNRNVFKAISILQSSRTDFVCANAIVDQVKFQMRNRIPVEH
IDEAIKQSLANLTMLGIVRRLGSSKYSLSTIVYGRLGMPNPIAHPPGNPG
RPHRRAAQNARQKRPVGRLDPWKSVSKILSEDSLSGTEMTKMRKRMRTNT
KRVVKKKRIPNRRLSRARKYKETEMATTSIDLRCSESRLGLDNNVQILFG
SPGWTYTKPIQSTLVLPDAPLRLDQKANDPETPKTTVLSGNSSSTSVTDV
KGNVVKDEEGGSQPSISGTNCRAVPIGLGIRPAYHTSGGESDVENASVVG
LCGSPLCLQSTMSQSLAHDSAPTTSRPTAKQSNNLGIQQITECQENDRVV
ESSEVQETFENNLDKQASQPSDVLEECQSALNYDFYK*

BS07290.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5538-PA 387 CG5538-PA 1..387 1..387 1985 100 Plus