Clone Sequence Records
BS07292.3prime Sequence
827 bp (812 high quality bases) assembled on 2006-01-06
> BS07292.3prime
ATGGTCTAGAAAGCTTCTACTTTCCCGCCCCAGGAGCCCTGGGATTGGGC
TCGATGCGCAATAGTTGCTTGTGCTGGCCAATCATGTGCTCGATGTGGTT
GCACTCGCGGAGATGACCCTTGAACTCATCGAGAGTCTGGTAAAGCACCG
GATAGAGGGCGGGCAGGAGGCCATGATCCAGGGTCGGGAAGAGATGGTGG
AGCACATGGTCACCAAAGTGGGTGAGCACCAGGAACTGCGACCACTTGAG
ATCACCGCGGTCGATAATCGTGTCCACCTGGAAGAGACCCCAGTCACGAT
CCTCACGATTGGCATCACCCTCGTGATAGATTTCCGGATCGTGATGCGCC
GCATTCAGACCAATCAAGCAGAAGCTAAAGCTGGCTATCGACGTCATCGC
GAGCCACTGGCGCACGCAGATCCAAATGCCTAAAGATCCCCCGGTTCCCA
GGTATATGGCAATGGGTATAGTCAGTGGCAGTAGGTCGTGCCAGTAGAGG
ATGTTGGTGTGGCGCAGCGAATAGAAAATACGAGTGCCCATTTGTATGAA
GAAGGCGAGGGCATAGGCCACCGGCTCCGTGACCCAGGACACATAACGCA
TCAACTTGCTCTTGATGTGCGGATTGGGCACCCAGCACAGCAAGGGTTCG
AACATCGAGAGTTCCAGATCGAAATACGAATTCGGATAGATGTGGTGGGA
CAGAGCATGGGACACACGCCAGGCGGCAAAGTTCATCATGCCCAGATTAA
AGGCGTACATCTGCCAGTTGTCCCGACGATGAAAGTAGTTGTGGGACACG
ATCACCGTCCAGCAGAGGGCCACACTC
BS07292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13279-PA | 1311 | Cyt-b5-r-RA | 501..1311 | 827..17 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-r-RB | 1557 | CG13279-RB | 590..1400 | 827..17 | 4055 | 100 | Minus |
Cyt-b5-r-RA | 1465 | CG13279-RA | 590..1400 | 827..17 | 4055 | 100 | Minus |
CG17928-RB | 1595 | CG17928-RB | 1103..1314 | 382..171 | 295 | 77.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16788931..16789445 | 17..531 | 2575 | 100 | Plus |
2L | 23513712 | 2L | 16789517..16789813 | 531..827 | 1485 | 100 | Plus |
2L | 23513712 | 2L | 16793042..16793163 | 292..171 | 265 | 81.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:40:11 has no hits.
BS07292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:25 Download gff for
BS07292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13279-PA | 501..1311 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:55 Download gff for
BS07292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13279-PA | 501..1311 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:54 Download gff for
BS07292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 590..1405 | 11..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:28 Download gff for
BS07292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 590..1405 | 11..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:28 Download gff for
BS07292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16789517..16789813 | 531..827 | 100 | | Plus |
2L | 16788926..16789444 | 11..530 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:54 Download gff for
BS07292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16788926..16789444 | 11..530 | 99 | <- | Plus |
arm_2L | 16789517..16789813 | 531..827 | 100 | | Plus |
BS07292.5prime Sequence
931 bp (755 high quality bases) assembled on 2006-01-06
> BS07292.5prime
GAAGTTATCAGTCGACATGGTAATCGAGGAGTGGAAAAAGAGTGGCATTG
CCACCAAGTTTCCAACATACCGAAATTCGGCCCTAATCACCACACACAGC
TGGCAAAAGGGTAAACGGCAGGACGATGGAGCCGAAGGACTGTGGCGCAT
CAACGATGGCATCTATGACTTCACCTCGTTCATTGACAAGCATCCTGGCG
GTCCCTTCTGGATTCGTGAGACCAAGGGCACCGACATCACCGAAGCCTTT
GAGGCACATCATCTGACCACGGCTCCCGAAAAGATGATCGCCAAATACAA
GGTGAGGGATGCGGCTGAACCCAGAATCTACACACTGACCTTGGAGGAGG
GCGGATTCTACAAGACGCTAAAGGAGCGAGTCCGCGAGCAACTAAAGACC
ATAGACAAGCGGCCGAAAAAGAAGAGTGATCTCATTCACCTGGGTCTCGT
TGTGTCGCTCTACCTGTTGGGCATTGCCAGTGCCAAATACAACAGCCTTT
TGGCTTTGGTCTTGGCGAGTGTGGCCCTCTGCTGGACGGTGATCGTGTCC
CACAACTACTTTCATCGTCGGGACAACTGGCAGATGTACGCCTTTAATCT
GGGCATGATGAACTTTGCCGCCTGGCGTGTGTCCCATGCTCTGTCCCACC
ACATCTATCCGAATTCGTATTTCGATCTGGAACTCTCGATGTTCGAACCC
TTGCTGTGCTGGGTGCCCAATCCGCACATCAAGAGCAAGTTGATGCGTTA
TGTGTCCTGGGTCACGGAGCCGGTGGCCTATGCCCTCGCCTTCTTCATAC
AAATGGGCACTCGTATTTTCTATTCGCTGCGCCACACCAACATCCTCTAC
TGGCACGACCTACTGCCACTGACTATACCCATTGGCATATACCTGGGAAC
CGGGGGATCTTTAGGCATTTGGATCTGCGTG
BS07292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13279-PA | 1311 | Cyt-b5-r-RA | 1..915 | 17..931 | 4550 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-r-RB | 1557 | CG13279-RB | 90..1004 | 17..931 | 4560 | 99.9 | Plus |
Cyt-b5-r-RA | 1465 | CG13279-RA | 90..1004 | 17..931 | 4560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16790219..16790632 | 430..17 | 2070 | 100 | Minus |
2L | 23513712 | 2L | 16789517..16789899 | 813..431 | 1915 | 100 | Minus |
2L | 23513712 | 2L | 16789327..16789445 | 931..813 | 580 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:39:51 has no hits.
BS07292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:26 Download gff for
BS07292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13279-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:56 Download gff for
BS07292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13279-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:16 Download gff for
BS07292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 82..1004 | 8..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:24:58 Download gff for
BS07292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 82..1004 | 8..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:24:58 Download gff for
BS07292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16789327..16789444 | 814..931 | 99 | <- | Minus |
2L | 16789517..16789899 | 431..813 | 100 | <- | Minus |
2L | 16790219..16790640 | 8..430 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:16 Download gff for
BS07292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16789327..16789444 | 814..931 | 99 | <- | Minus |
arm_2L | 16789517..16789899 | 431..813 | 100 | <- | Minus |
arm_2L | 16790219..16790640 | 8..430 | 99 | | Minus |
BS07292.complete Sequence
1343 bp (1343 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635806
> BS07292.complete
GAAGTTATCAGTCGACATGGTAATCGAGGAGTGGAAAAAGAGTGGCATTG
CCACCAAGTTTCCAACATACCGAAATTCGGCCCTAATCACCACACACAGC
TGGCAAAAGGGTAAACGGCAGGACGATGGAGCCGAAGGACTGTGGCGCAT
CAACGATGGCATCTATGACTTCACCTCGTTCATTGACAAGCATCCTGGCG
GTCCCTTCTGGATTCGTGAGACCAAGGGCACCGACATCACCGAAGCCTTT
GAGGCACATCATCTGACCACGGCTCCCGAAAAGATGATCGCCAAATACAA
GGTGAGGGATGCGGCTGAACCCAGAATCTACACACTGACCTTGGAGGAGG
GCGGATTCTACAAGACGCTAAAGGAGCGAGTCCGCGAGCAACTAAAGACC
ATAGACAAGCGGCCGAAAAAGAAGAGTGATCTCATTCACCTGGGTCTCGT
TGTGTCGCTCTACCTGTTGGGCATTGCCAGTGCCAAATACAACAGCCTTT
TGGCTTTGGTCTTGGCGAGTGTGGCCCTCTGCTGGACGGTGATCGTGTCC
CACAACTACTTTCATCGTCGGGACAACTGGCAGATGTACGCCTTTAATCT
GGGCATGATGAACTTTGCCGCCTGGCGTGTGTCCCATGCTCTGTCCCACC
ACATCTATCCGAATTCGTATTTCGATCTGGAACTCTCGATGTTCGAACCC
TTGCTGTGCTGGGTGCCCAATCCGCACATCAAGAGCAAGTTGATGCGTTA
TGTGTCCTGGGTCACGGAGCCGGTGGCCTATGCCCTCGCCTTCTTCATAC
AAATGGGCACTCGTATTTTCTATTCGCTGCGCCACACCAACATCCTCTAC
TGGCACGACCTACTGCCACTGACTATACCCATTGCCATATACCTGGGAAC
CGGGGGATCTTTAGGCATTTGGATCTGCGTGCGCCAGTGGCTCGCGATGA
CGTCGATAGCCAGCTTTAGCTTCTGCTTGATTGGTCTGAATGCGGCGCAT
CACGATCCGGAAATCTATCACGAGGGTGATGCCAATCGTGAGGATCGTGA
CTGGGGTCTCTTCCAGGTGGACACGATTATCGACCGCGGTGATCTCAAGT
GGTCGCAGTTCCTGGTGCTCACCCACTTTGGTGACCATGTGCTCCACCAT
CTCTTCCCGACCCTGGATCATGGCCTCCTGCCCGCCCTCTATCCGGTGCT
TTACCAGACTCTCGATGAGTTCAAGGGTCATCTCCGCGAGTGCAACCACA
TCGAGCACATGATTGGCCAGCACAAGCAACTATTGCGCATCGAGCCCAAT
CCCAGGGCTCCTGGGGCGGGAAAGTAGAAGCTTTCTAGACCAT
BS07292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-r-RB | 1311 | CG13279-PB | 1..1311 | 17..1327 | 6555 | 100 | Plus |
Cyt-b5-r-RA | 1311 | CG13279-PA | 1..1311 | 17..1327 | 6555 | 100 | Plus |
CG17928-RB | 1326 | CG17928-PB | 1045..1166 | 1052..1173 | 265 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-r-RB | 1557 | CG13279-RB | 90..1400 | 17..1327 | 6555 | 100 | Plus |
Cyt-b5-r-RA | 1465 | CG13279-RA | 90..1400 | 17..1327 | 6555 | 100 | Plus |
CG17928-RB | 1595 | CG17928-RB | 1193..1314 | 1052..1173 | 265 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16788931..16789445 | 1327..813 | 2575 | 100 | Minus |
2L | 23513712 | 2L | 16790219..16790632 | 430..17 | 2070 | 100 | Minus |
2L | 23513712 | 2L | 16789517..16789899 | 813..431 | 1915 | 100 | Minus |
2L | 23513712 | 2L | 16793042..16793163 | 1052..1173 | 265 | 81.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:35:51 has no hits.
BS07292.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:39 Download gff for
BS07292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 1..1311 | 17..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:57 Download gff for
BS07292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 79..1402 | 8..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:53 Download gff for
BS07292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 90..1400 | 17..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:40 Download gff for
BS07292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 79..1402 | 8..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:49 Download gff for
BS07292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 90..1400 | 17..1327 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:49 Download gff for
BS07292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16788931..16789444 | 814..1327 | 100 | <- | Minus |
2L | 16789517..16789899 | 431..813 | 100 | <- | Minus |
2L | 16790219..16790632 | 17..430 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:53 Download gff for
BS07292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16788931..16789444 | 814..1327 | 100 | <- | Minus |
arm_2L | 16789517..16789899 | 431..813 | 100 | <- | Minus |
arm_2L | 16790219..16790632 | 17..430 | 100 | | Minus |
BS07292.pep Sequence
Translation from 16 to 1326
> BS07292.pep
MVIEEWKKSGIATKFPTYRNSALITTHSWQKGKRQDDGAEGLWRINDGIY
DFTSFIDKHPGGPFWIRETKGTDITEAFEAHHLTTAPEKMIAKYKVRDAA
EPRIYTLTLEEGGFYKTLKERVREQLKTIDKRPKKKSDLIHLGLVVSLYL
LGIASAKYNSLLALVLASVALCWTVIVSHNYFHRRDNWQMYAFNLGMMNF
AAWRVSHALSHHIYPNSYFDLELSMFEPLLCWVPNPHIKSKLMRYVSWVT
EPVAYALAFFIQMGTRIFYSLRHTNILYWHDLLPLTIPIAIYLGTGGSLG
IWICVRQWLAMTSIASFSFCLIGLNAAHHDPEIYHEGDANREDRDWGLFQ
VDTIIDRGDLKWSQFLVLTHFGDHVLHHLFPTLDHGLLPALYPVLYQTLD
EFKGHLRECNHIEHMIGQHKQLLRIEPNPRAPGAGK*
BS07292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-r-PB | 436 | CG13279-PB | 1..436 | 1..436 | 2368 | 100 | Plus |
Cyt-b5-r-PA | 436 | CG13279-PA | 1..436 | 1..436 | 2368 | 100 | Plus |
CG17928-PB | 441 | CG17928-PB | 10..439 | 5..436 | 1303 | 55.6 | Plus |
CG17928-PA | 441 | CG17928-PA | 10..439 | 5..436 | 1303 | 55.6 | Plus |