Clone BS07292 Report

Search the DGRC for BS07292

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCyt-b5-r-RA
Protein status:BS07292.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07292.3prime Sequence

827 bp (812 high quality bases) assembled on 2006-01-06

> BS07292.3prime
ATGGTCTAGAAAGCTTCTACTTTCCCGCCCCAGGAGCCCTGGGATTGGGC
TCGATGCGCAATAGTTGCTTGTGCTGGCCAATCATGTGCTCGATGTGGTT
GCACTCGCGGAGATGACCCTTGAACTCATCGAGAGTCTGGTAAAGCACCG
GATAGAGGGCGGGCAGGAGGCCATGATCCAGGGTCGGGAAGAGATGGTGG
AGCACATGGTCACCAAAGTGGGTGAGCACCAGGAACTGCGACCACTTGAG
ATCACCGCGGTCGATAATCGTGTCCACCTGGAAGAGACCCCAGTCACGAT
CCTCACGATTGGCATCACCCTCGTGATAGATTTCCGGATCGTGATGCGCC
GCATTCAGACCAATCAAGCAGAAGCTAAAGCTGGCTATCGACGTCATCGC
GAGCCACTGGCGCACGCAGATCCAAATGCCTAAAGATCCCCCGGTTCCCA
GGTATATGGCAATGGGTATAGTCAGTGGCAGTAGGTCGTGCCAGTAGAGG
ATGTTGGTGTGGCGCAGCGAATAGAAAATACGAGTGCCCATTTGTATGAA
GAAGGCGAGGGCATAGGCCACCGGCTCCGTGACCCAGGACACATAACGCA
TCAACTTGCTCTTGATGTGCGGATTGGGCACCCAGCACAGCAAGGGTTCG
AACATCGAGAGTTCCAGATCGAAATACGAATTCGGATAGATGTGGTGGGA
CAGAGCATGGGACACACGCCAGGCGGCAAAGTTCATCATGCCCAGATTAA
AGGCGTACATCTGCCAGTTGTCCCGACGATGAAAGTAGTTGTGGGACACG
ATCACCGTCCAGCAGAGGGCCACACTC

BS07292.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13279-PA 1311 Cyt-b5-r-RA 501..1311 827..17 4055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-r-RB 1557 CG13279-RB 590..1400 827..17 4055 100 Minus
Cyt-b5-r-RA 1465 CG13279-RA 590..1400 827..17 4055 100 Minus
CG17928-RB 1595 CG17928-RB 1103..1314 382..171 295 77.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16788931..16789445 17..531 2575 100 Plus
2L 23513712 2L 16789517..16789813 531..827 1485 100 Plus
2L 23513712 2L 16793042..16793163 292..171 265 81.1 Minus
Blast to na_te.dros performed on 2015-02-12 00:40:11 has no hits.

BS07292.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:25 Download gff for BS07292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13279-PA 501..1311 17..827 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:55 Download gff for BS07292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13279-PA 501..1311 17..827 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:54 Download gff for BS07292.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 590..1405 11..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:28 Download gff for BS07292.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 590..1405 11..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:28 Download gff for BS07292.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16789517..16789813 531..827 100   Plus
2L 16788926..16789444 11..530 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:54 Download gff for BS07292.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16788926..16789444 11..530 99 <- Plus
arm_2L 16789517..16789813 531..827 100   Plus

BS07292.5prime Sequence

931 bp (755 high quality bases) assembled on 2006-01-06

> BS07292.5prime
GAAGTTATCAGTCGACATGGTAATCGAGGAGTGGAAAAAGAGTGGCATTG
CCACCAAGTTTCCAACATACCGAAATTCGGCCCTAATCACCACACACAGC
TGGCAAAAGGGTAAACGGCAGGACGATGGAGCCGAAGGACTGTGGCGCAT
CAACGATGGCATCTATGACTTCACCTCGTTCATTGACAAGCATCCTGGCG
GTCCCTTCTGGATTCGTGAGACCAAGGGCACCGACATCACCGAAGCCTTT
GAGGCACATCATCTGACCACGGCTCCCGAAAAGATGATCGCCAAATACAA
GGTGAGGGATGCGGCTGAACCCAGAATCTACACACTGACCTTGGAGGAGG
GCGGATTCTACAAGACGCTAAAGGAGCGAGTCCGCGAGCAACTAAAGACC
ATAGACAAGCGGCCGAAAAAGAAGAGTGATCTCATTCACCTGGGTCTCGT
TGTGTCGCTCTACCTGTTGGGCATTGCCAGTGCCAAATACAACAGCCTTT
TGGCTTTGGTCTTGGCGAGTGTGGCCCTCTGCTGGACGGTGATCGTGTCC
CACAACTACTTTCATCGTCGGGACAACTGGCAGATGTACGCCTTTAATCT
GGGCATGATGAACTTTGCCGCCTGGCGTGTGTCCCATGCTCTGTCCCACC
ACATCTATCCGAATTCGTATTTCGATCTGGAACTCTCGATGTTCGAACCC
TTGCTGTGCTGGGTGCCCAATCCGCACATCAAGAGCAAGTTGATGCGTTA
TGTGTCCTGGGTCACGGAGCCGGTGGCCTATGCCCTCGCCTTCTTCATAC
AAATGGGCACTCGTATTTTCTATTCGCTGCGCCACACCAACATCCTCTAC
TGGCACGACCTACTGCCACTGACTATACCCATTGGCATATACCTGGGAAC
CGGGGGATCTTTAGGCATTTGGATCTGCGTG

BS07292.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13279-PA 1311 Cyt-b5-r-RA 1..915 17..931 4550 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-r-RB 1557 CG13279-RB 90..1004 17..931 4560 99.9 Plus
Cyt-b5-r-RA 1465 CG13279-RA 90..1004 17..931 4560 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16790219..16790632 430..17 2070 100 Minus
2L 23513712 2L 16789517..16789899 813..431 1915 100 Minus
2L 23513712 2L 16789327..16789445 931..813 580 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 04:39:51 has no hits.

BS07292.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:26 Download gff for BS07292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13279-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:56 Download gff for BS07292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13279-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:16 Download gff for BS07292.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 82..1004 8..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:24:58 Download gff for BS07292.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 82..1004 8..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:24:58 Download gff for BS07292.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16789327..16789444 814..931 99 <- Minus
2L 16789517..16789899 431..813 100 <- Minus
2L 16790219..16790640 8..430 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:16 Download gff for BS07292.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16789327..16789444 814..931 99 <- Minus
arm_2L 16789517..16789899 431..813 100 <- Minus
arm_2L 16790219..16790640 8..430 99   Minus

BS07292.complete Sequence

1343 bp (1343 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635806

> BS07292.complete
GAAGTTATCAGTCGACATGGTAATCGAGGAGTGGAAAAAGAGTGGCATTG
CCACCAAGTTTCCAACATACCGAAATTCGGCCCTAATCACCACACACAGC
TGGCAAAAGGGTAAACGGCAGGACGATGGAGCCGAAGGACTGTGGCGCAT
CAACGATGGCATCTATGACTTCACCTCGTTCATTGACAAGCATCCTGGCG
GTCCCTTCTGGATTCGTGAGACCAAGGGCACCGACATCACCGAAGCCTTT
GAGGCACATCATCTGACCACGGCTCCCGAAAAGATGATCGCCAAATACAA
GGTGAGGGATGCGGCTGAACCCAGAATCTACACACTGACCTTGGAGGAGG
GCGGATTCTACAAGACGCTAAAGGAGCGAGTCCGCGAGCAACTAAAGACC
ATAGACAAGCGGCCGAAAAAGAAGAGTGATCTCATTCACCTGGGTCTCGT
TGTGTCGCTCTACCTGTTGGGCATTGCCAGTGCCAAATACAACAGCCTTT
TGGCTTTGGTCTTGGCGAGTGTGGCCCTCTGCTGGACGGTGATCGTGTCC
CACAACTACTTTCATCGTCGGGACAACTGGCAGATGTACGCCTTTAATCT
GGGCATGATGAACTTTGCCGCCTGGCGTGTGTCCCATGCTCTGTCCCACC
ACATCTATCCGAATTCGTATTTCGATCTGGAACTCTCGATGTTCGAACCC
TTGCTGTGCTGGGTGCCCAATCCGCACATCAAGAGCAAGTTGATGCGTTA
TGTGTCCTGGGTCACGGAGCCGGTGGCCTATGCCCTCGCCTTCTTCATAC
AAATGGGCACTCGTATTTTCTATTCGCTGCGCCACACCAACATCCTCTAC
TGGCACGACCTACTGCCACTGACTATACCCATTGCCATATACCTGGGAAC
CGGGGGATCTTTAGGCATTTGGATCTGCGTGCGCCAGTGGCTCGCGATGA
CGTCGATAGCCAGCTTTAGCTTCTGCTTGATTGGTCTGAATGCGGCGCAT
CACGATCCGGAAATCTATCACGAGGGTGATGCCAATCGTGAGGATCGTGA
CTGGGGTCTCTTCCAGGTGGACACGATTATCGACCGCGGTGATCTCAAGT
GGTCGCAGTTCCTGGTGCTCACCCACTTTGGTGACCATGTGCTCCACCAT
CTCTTCCCGACCCTGGATCATGGCCTCCTGCCCGCCCTCTATCCGGTGCT
TTACCAGACTCTCGATGAGTTCAAGGGTCATCTCCGCGAGTGCAACCACA
TCGAGCACATGATTGGCCAGCACAAGCAACTATTGCGCATCGAGCCCAAT
CCCAGGGCTCCTGGGGCGGGAAAGTAGAAGCTTTCTAGACCAT

BS07292.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-r-RB 1311 CG13279-PB 1..1311 17..1327 6555 100 Plus
Cyt-b5-r-RA 1311 CG13279-PA 1..1311 17..1327 6555 100 Plus
CG17928-RB 1326 CG17928-PB 1045..1166 1052..1173 265 81.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-r-RB 1557 CG13279-RB 90..1400 17..1327 6555 100 Plus
Cyt-b5-r-RA 1465 CG13279-RA 90..1400 17..1327 6555 100 Plus
CG17928-RB 1595 CG17928-RB 1193..1314 1052..1173 265 81.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16788931..16789445 1327..813 2575 100 Minus
2L 23513712 2L 16790219..16790632 430..17 2070 100 Minus
2L 23513712 2L 16789517..16789899 813..431 1915 100 Minus
2L 23513712 2L 16793042..16793163 1052..1173 265 81.1 Plus
Blast to na_te.dros performed on 2014-11-27 14:35:51 has no hits.

BS07292.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:39 Download gff for BS07292.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 1..1311 17..1327 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:57 Download gff for BS07292.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 79..1402 8..1333 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:53 Download gff for BS07292.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 90..1400 17..1327 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:40 Download gff for BS07292.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 79..1402 8..1333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:49 Download gff for BS07292.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 90..1400 17..1327 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:49 Download gff for BS07292.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16788931..16789444 814..1327 100 <- Minus
2L 16789517..16789899 431..813 100 <- Minus
2L 16790219..16790632 17..430 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:53 Download gff for BS07292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16788931..16789444 814..1327 100 <- Minus
arm_2L 16789517..16789899 431..813 100 <- Minus
arm_2L 16790219..16790632 17..430 100   Minus

BS07292.pep Sequence

Translation from 16 to 1326

> BS07292.pep
MVIEEWKKSGIATKFPTYRNSALITTHSWQKGKRQDDGAEGLWRINDGIY
DFTSFIDKHPGGPFWIRETKGTDITEAFEAHHLTTAPEKMIAKYKVRDAA
EPRIYTLTLEEGGFYKTLKERVREQLKTIDKRPKKKSDLIHLGLVVSLYL
LGIASAKYNSLLALVLASVALCWTVIVSHNYFHRRDNWQMYAFNLGMMNF
AAWRVSHALSHHIYPNSYFDLELSMFEPLLCWVPNPHIKSKLMRYVSWVT
EPVAYALAFFIQMGTRIFYSLRHTNILYWHDLLPLTIPIAIYLGTGGSLG
IWICVRQWLAMTSIASFSFCLIGLNAAHHDPEIYHEGDANREDRDWGLFQ
VDTIIDRGDLKWSQFLVLTHFGDHVLHHLFPTLDHGLLPALYPVLYQTLD
EFKGHLRECNHIEHMIGQHKQLLRIEPNPRAPGAGK*

BS07292.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-r-PB 436 CG13279-PB 1..436 1..436 2368 100 Plus
Cyt-b5-r-PA 436 CG13279-PA 1..436 1..436 2368 100 Plus
CG17928-PB 441 CG17928-PB 10..439 5..436 1303 55.6 Plus
CG17928-PA 441 CG17928-PA 10..439 5..436 1303 55.6 Plus