Clone BS07293 Report

Search the DGRC for BS07293

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptPkg21D-RA
Protein status:BS07293.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07293.3prime Sequence

930 bp (824 high quality bases) assembled on 2006-01-06

> BS07293.3prime
ATGGTCTAGAAAGCTTCTAGAAATCCGCATCCCAGCCGGAGAGCTCGTCC
GGTGGCTCGTTCAAATCGCACGGAAAGCGGTCGAAGTAGCGAACATCCGT
CGGATGGGCGATGGGTCTCACGAAGGGCGGAATCAGCAGCTGGCTGGCCA
AGCCGTCCCAGTCGAATCCCAGGAACCACTTATGTTTCTTTATGTCCTGT
ATGCCACCAGTCTGGTAGCCGAGGCGCTCCGATGGAACATCGCGGCACAG
TCGCTTGATGAGCTGCACGGCCCAGCGGGAGATGTGCTTGGGAAAGGCTA
TCATGTCAATGCCCTTCAGGATGAGATTGTACGTCTGCATGGGATCTGGA
GCACTGAACGGTGGCGTTCCGTTGAGCAGTTCATGAATGAGAATGCCCAA
AGCCCAGTAGTCTACGGCTCGATCGTGACCCTTGTTCAGGATGATCTCGG
GTGCCACGTACTCCGGGGTGCCGCAGAAGGTCCACGTCTTAGAGCTCGTT
CCGATCTGCTTGGCAAAGCCGAAGTCCACGATCTTGACGTAGCCGCGCTC
ATCAAGCATCAGGTTCTCCGGCTTAAGGTCTCTATAGATGATCCCGCGGG
CATGCAAGTATTCAAACGCCTGCAGCACACACCCGATGATGAACTGCGCC
GCGTTGTCCTCGAAGGATCCGCGATCCCGGAGCATCGTCCATATCTCCCC
ACCCATGCAGGCCTCGAGCAGCATATACACGTACTTCTCGTCACGGAAGG
TGCGATACAAACGGCAGATGAAGGGCGATCTCGAACTGAGCATGATATGA
CGTTCACTGAAGATGTGCTCCTCCTGTTTGGTGTCCACATATGTCGCTTC
TTGAGGCACTTTAGGGCAAAGATATCCACGCGATCCTGATGGTGGGCCTT
GACCAGCTCCACCCGACCAAAGCCTCCGAT

BS07293.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3324-PA 2307 Pkg21D-RA 1485..2307 839..17 4115 100 Minus
CG3324-PA 2307 Pkg21D-RA 1393..1484 930..839 460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Pkg21D-RA 2583 CG3324-RA 1562..2476 930..17 4550 99.9 Minus
CG3544-RB 4359 CG3544-RB 2315..2881 365..930 2810 99.8 Plus
CG3544-RB 4359 CG3544-RB 1925..2087 17..179 815 100 Plus
CG3544-RB 4359 CG3544-RB 2091..2247 209..365 785 100 Plus
for-RK 3223 CG10033-RK 2334..2653 742..423 340 74.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 786732..787298 365..930 2785 99.8 Plus
2L 23513712 2L 786476..786664 177..365 945 100 Plus
2L 23513712 2L 786260..786422 17..179 815 100 Plus
2L 23513712 2L 3623315..3623634 423..742 340 73.8 Plus
Blast to na_te.dros performed on 2015-02-12 03:56:46 has no hits.

BS07293.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:27 Download gff for BS07293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3324-PA 1393..2307 17..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:57 Download gff for BS07293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3324-PA 1393..2307 17..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:16 Download gff for BS07293.3prime
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 1562..2484 9..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:18 Download gff for BS07293.3prime
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 1562..2484 9..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:18 Download gff for BS07293.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 786252..786422 9..179 97 <- Plus
2L 786479..786664 180..365 100 <- Plus
2L 786733..787298 366..930 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:16 Download gff for BS07293.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 786252..786422 9..179 97 <- Plus
arm_2L 786479..786664 180..365 100 <- Plus
arm_2L 786733..787298 366..930 99   Plus

BS07293.5prime Sequence

957 bp (777 high quality bases) assembled on 2006-01-06

> BS07293.5prime
GAAGTTATCAGTCGACATGGCCGCTGGAATGTTGACTGATCGGGAGCGGG
AGGCGATCGTCAGCAATCTGACCAAGGACGTGCAGGCTCTGAGGGAAATG
GTGCGGAGTCGGGAGAGCGAGCTGGTCAAGCTGCACCGCGAAATCCACAA
GCTGAAGAGTGTTCTCCAGCAGACCACCAACAACCTGAACGTCACCCGAA
ATGAGAAGGCCAAAAAGAAGCTCTACTCCTTGCCAGAGCAATGTGGCGAG
CAGGAAAGTAGGAATCAGAATCCACATTTGTGCAGCTCCTGCGGCATGGT
GCTGCCCACCAGTCCGGAGTTTGCCCTGGAGGCGCTTTCTCTGGGACCGC
TGTCCCCATTAGCATCAACATCTTCCGCCTCCCCCTCTGGACGAACTTCT
GCTGATGAAGTGCGACCCAAGGCGATGCCCGCTGCTATCAAGAAACAAGG
TGTCTCCGCCGAGAGCTGTGTGCAGTCCATGCAGCAATCCTACAGCATAC
CGATTCCAAAATACGAAAAGGATTTCAGTGATAAGCAGCAAATCAAAGAC
GCCATTATGGACAATGACTTCCTAAAGAACATAGACGCATCGCAGGTGCG
GGAACTGGTAGATTCAATGTACTCCAAGAGCATAGCAGCCGGCGAGTTTG
TGATCCGCGAGGGTGAAGTGGGCGCACATCTGTACGTCTCCGCCGCCGGC
GAGTTTGCGGTGATGCAGCAGGGCAAGGTGCTGGACAAGATGGGGGCGGG
AAAGGCGTTTGGGGAGCTGGCTATCCTCTANCACTGCACCAGAACGGCCT
CCATTCGAGTCCTAAGTGAGGCCGCGAGGGTATGGGTGCTGGACAGACGG
GTCTTTCAGCAGATTATGATGTGCACGGGCCTCCAGCGAATCGAAAACAG
CGTGAACTTCCTGAGATCCGTGCCTCTGCTGATGAACCTTAGTGAGAAGC
TGCTGGC

BS07293.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3324-PA 2307 Pkg21D-RA 1..941 17..957 4636 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pkg21D-RA 2583 CG3324-RA 170..1110 17..957 4664 99.7 Plus
CG3544-RB 4359 CG3544-RB 3333..3764 957..526 2119 99.3 Minus
CG3544-RB 4359 CG3544-RB 3825..4197 528..156 1865 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 787750..788181 957..526 2119 99.3 Minus
2L 23513712 2L 788242..788614 528..156 1865 100 Minus
2L 23513712 2L 790489..790629 157..17 705 100 Minus
Blast to na_te.dros performed on 2015-02-02 10:44:25 has no hits.

BS07293.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:28 Download gff for BS07293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3324-PA 1..941 17..957 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:58 Download gff for BS07293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3324-PA 1..941 17..957 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:32:29 Download gff for BS07293.5prime
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 168..1110 14..957 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:37 Download gff for BS07293.5prime
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 168..1110 14..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:37 Download gff for BS07293.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 787750..788178 529..957 99 <- Minus
2L 788242..788612 158..528 100 <- Minus
2L 790489..790631 14..157 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:32:29 Download gff for BS07293.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 787750..788178 529..957 99 <- Minus
arm_2L 788242..788612 158..528 100 <- Minus
arm_2L 790489..790631 14..157 99   Minus

BS07293.complete Sequence

2339 bp assembled on 2008-01-02

GenBank Submission: FJ635807

> BS07293.complete
GAAGTTATCAGTCGACATGGCCGCTGGAATGTTGACTGATCGGGAGCGGG
AGGCGATCGTCAGCAATCTGACCAAGGACGTGCAGGCTCTGAGGGAAATG
GTGCGGAGTCGGGAGAGCGAGCTGGTCAAGCTGCACCGCGAAATCCACAA
GCTGAAGAGTGTTCTCCAGCAGACCACCAACAACCTGAACGTCACCCGAA
ATGAGAAGGCCAAAAAGAAGCTCTACTCCTTGCCAGAGCAATGTGGCGAG
CAGGAAAGTAGGAATCAGAATCCACATTTGTGCAGCTCCTGCGGCATGGT
GCTGCCCACCAGTCCGGAGTTTGCCCTGGAGGCGCTTTCTCTGGGACCGC
TGTCCCCATTAGCATCAACATCTTCCGCCTCCCCCTCTGGACGAACTTCT
GCTGATGAAGTGCGACCCAAGGCGATGCCCGCTGCTATCAAGAAACAAGG
TGTCTCCGCCGAGAGCTGTGTGCAGTCCATGCAGCAATCCTACAGCATAC
CGATTCCAAAATACGAAAAGGATTTCAGTGATAAGCAGCAAATCAAAGAC
GCCATTATGGACAATGACTTCCTAAAGAACATAGACGCATCGCAGGTGCG
GGAACTGGTAGATTCAATGTACTCCAAGAGCATAGCAGCCGGCGAGTTTG
TGATCCGCGAGGGTGAAGTGGGCGCACATCTGTACGTCTCCGCCGCCGGC
GAGTTTGCGGTGATGCAGCAGGGCAAGGTGCTGGACAAGATGGGGGCGGG
AAAGGCGTTTGGGGAGCTGGCTATCCTCTACAACTGCACCAGAACGGCCT
CCATTCGAGTCCTAAGTGAGGCCGCGAGGGTATGGGTGCTGGACAGACGG
GTCTTTCAGCAGATTATGATGTGCACGGGCCTCCAGCGAATCGAAAACAG
CGTGAACTTCCTGAGATCCGTGCCTCTGCTGATGAACCTTAGTGAGGAGC
TGCTGGCCAAGATAGCAGACGTTCTGGAGCTGGAGTTCTACGCCGCTGGC
ACCTACATCATCCGCCAAGGAACCGCCGGGGACAGTTTCTTCTTGATCTC
ACAGGGCAATGTCCGAGTGACCCAAAAACTAACTCCCACCTCCCCGGAGG
AAACGGAGTTGCGAACGCTATCCAGGGGAGACTATTTTGGAGAGCAGGCG
CTGATCAACGAGGATAAGCGAACGGCCAACATCATCGCACTGTCACCAGG
AGTTGAGTGCTTGACCCTGGACAGGGATTCCTTCAAGCGGCTAATTGGGG
ATCTATGCGAGCTGAAGGAGAAGGACTACGGCGATGAGAGCAGGAAGCTA
GCCATGAAGCAGGCGCAAGAAAGCTGCCGGGATGAGCCGAAGGAGCAGCT
GCAGCAGGAGTTCCCCGATCTCAAGCTCACGGACCTCGAGGTGGTCAGCA
CTCTTGGCATCGGAGGCTTTGGTCGGGTGGAGCTGGTCAAGGCCCACCAT
CAGGATCGCGTGGATATCTTTGCCCTAAAGTGCCTCAAGAAGCGACATAT
TGTGGACACCAAACAGGAGGAGCACATCTTCAGTGAACGTCATATCATGC
TCAGTTCGAGATCGCCCTTCATCTGCCGTTTGTATCGCACCTTCCGTGAC
GAGAAGTACGTGTATATGCTGCTCGAGGCCTGCATGGGTGGGGAGATATG
GACGATGCTCCGGGATCGCGGATCCTTCGAGGACAACGCGGCGCAGTTCA
TCATCGGGTGTGTGCTGCAGGCGTTTGAATACTTGCATGCCCGCGGGATC
ATCTATAGAGACCTTAAGCCGGAGAACCTGATGCTTGATGAGCGCGGCTA
CGTCAAGATCGTGGACTTCGGCTTTGCCAAGCAGATCGGAACGAGCTCTA
AGACGTGGACCTTCTGCGGCACCCCGGAGTACGTGGCACCCGAGATCATC
CTGAACAAGGGTCACGATCGAGCCGTAGACTACTGGGCTTTGGGCATTCT
CATTCATGAACTGCTCAACGGAACGCCACCGTTCAGTGCTCCAGATCCCA
TGCAGACGTACAATCTCATCCTGAAGGGCATTGACATGATAGCCTTTCCC
AAGCACATCTCCCGCTGGGCCGTGCAGCTCATCAAGCGACTGTGCCGCGA
TGTTCCATCGGAGCGCCTCGGCTACCAGACTGGTGGCATACAGGACATAA
AGAAACATAAGTGGTTCCTGGGATTCGACTGGGACGGCTTGGCCAGCCAG
CTGCTGATTCCGCCCTTCGTGAGACCCATCGCCCATCCGACGGATGTTCG
CTACTTCGACCGCTTTCCGTGCGATTTGAACGAGCCACCGGACGAGCTCT
CCGGCTGGGATGCGGATTTCTAGAAGCTTTCTAGACCAT

BS07293.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pkg21D-RA 2307 CG3324-PA 1..2307 17..2323 11535 100 Plus
for-RK 2685 CG10033-PK 1957..2276 1598..1917 340 73.8 Plus
for-RA 3267 CG10033-PA 2539..2858 1598..1917 340 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pkg21D-RA 2583 CG3324-RA 170..2476 17..2323 11535 100 Plus
CG3544-RB 4359 CG3544-RB 2315..3764 1975..526 7250 100 Minus
CG3544-RB 4359 CG3544-RB 3825..4197 528..156 1865 100 Minus
CG3544-RB 4359 CG3544-RB 1925..2087 2323..2161 815 100 Minus
CG3544-RB 4359 CG3544-RB 2091..2247 2131..1975 785 100 Minus
for-RK 3223 CG10033-RK 2334..2653 1598..1917 340 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 786732..788181 1975..526 7250 100 Minus
2L 23513712 2L 788242..788614 528..156 1865 100 Minus
2L 23513712 2L 786476..786664 2163..1975 945 100 Minus
2L 23513712 2L 786260..786422 2323..2161 815 100 Minus
2L 23513712 2L 790489..790629 157..17 705 100 Minus
2L 23513712 2L 3623315..3623634 1917..1598 340 73.8 Minus
Blast to na_te.dros performed on 2014-11-27 08:12:57 has no hits.

BS07293.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:16 Download gff for BS07293.complete
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 1..2307 17..2323 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:03 Download gff for BS07293.complete
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 167..2473 17..2323 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:21 Download gff for BS07293.complete
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 170..2476 17..2323 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:19 Download gff for BS07293.complete
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 165..2481 14..2331 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:20 Download gff for BS07293.complete
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 170..2476 17..2323 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:20 Download gff for BS07293.complete
Subject Subject Range Query Range Percent Splice Strand
2L 786260..786422 2161..2323 100 <- Minus
2L 786479..786664 1975..2160 100 <- Minus
2L 786733..788178 529..1974 100 <- Minus
2L 788242..788612 158..528 100 <- Minus
2L 790489..790629 17..157 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:21 Download gff for BS07293.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 786260..786422 2161..2323 100 <- Minus
arm_2L 786479..786664 1975..2160 100 <- Minus
arm_2L 786733..788178 529..1974 100 <- Minus
arm_2L 788242..788612 158..528 100 <- Minus
arm_2L 790489..790629 17..157 100   Minus

BS07293.pep Sequence

Translation from 16 to 2322

> BS07293.pep
MAAGMLTDREREAIVSNLTKDVQALREMVRSRESELVKLHREIHKLKSVL
QQTTNNLNVTRNEKAKKKLYSLPEQCGEQESRNQNPHLCSSCGMVLPTSP
EFALEALSLGPLSPLASTSSASPSGRTSADEVRPKAMPAAIKKQGVSAES
CVQSMQQSYSIPIPKYEKDFSDKQQIKDAIMDNDFLKNIDASQVRELVDS
MYSKSIAAGEFVIREGEVGAHLYVSAAGEFAVMQQGKVLDKMGAGKAFGE
LAILYNCTRTASIRVLSEAARVWVLDRRVFQQIMMCTGLQRIENSVNFLR
SVPLLMNLSEELLAKIADVLELEFYAAGTYIIRQGTAGDSFFLISQGNVR
VTQKLTPTSPEETELRTLSRGDYFGEQALINEDKRTANIIALSPGVECLT
LDRDSFKRLIGDLCELKEKDYGDESRKLAMKQAQESCRDEPKEQLQQEFP
DLKLTDLEVVSTLGIGGFGRVELVKAHHQDRVDIFALKCLKKRHIVDTKQ
EEHIFSERHIMLSSRSPFICRLYRTFRDEKYVYMLLEACMGGEIWTMLRD
RGSFEDNAAQFIIGCVLQAFEYLHARGIIYRDLKPENLMLDERGYVKIVD
FGFAKQIGTSSKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIHELL
NGTPPFSAPDPMQTYNLILKGIDMIAFPKHISRWAVQLIKRLCRDVPSER
LGYQTGGIQDIKKHKWFLGFDWDGLASQLLIPPFVRPIAHPTDVRYFDRF
PCDLNEPPDELSGWDADF*

BS07293.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pkg21D-PA 768 CG3324-PA 1..768 1..768 3976 100 Plus
for-PA 1088 CG10033-PA 433..1088 108..768 1702 50.7 Plus
for-PI 1088 CG10033-PI 433..1088 108..768 1702 50.7 Plus
for-PH 1088 CG10033-PH 433..1088 108..768 1702 50.7 Plus
for-PK 894 CG10033-PK 369..894 228..768 1508 54.1 Plus