Clone Sequence Records
BS07293.3prime Sequence
930 bp (824 high quality bases) assembled on 2006-01-06
> BS07293.3prime
ATGGTCTAGAAAGCTTCTAGAAATCCGCATCCCAGCCGGAGAGCTCGTCC
GGTGGCTCGTTCAAATCGCACGGAAAGCGGTCGAAGTAGCGAACATCCGT
CGGATGGGCGATGGGTCTCACGAAGGGCGGAATCAGCAGCTGGCTGGCCA
AGCCGTCCCAGTCGAATCCCAGGAACCACTTATGTTTCTTTATGTCCTGT
ATGCCACCAGTCTGGTAGCCGAGGCGCTCCGATGGAACATCGCGGCACAG
TCGCTTGATGAGCTGCACGGCCCAGCGGGAGATGTGCTTGGGAAAGGCTA
TCATGTCAATGCCCTTCAGGATGAGATTGTACGTCTGCATGGGATCTGGA
GCACTGAACGGTGGCGTTCCGTTGAGCAGTTCATGAATGAGAATGCCCAA
AGCCCAGTAGTCTACGGCTCGATCGTGACCCTTGTTCAGGATGATCTCGG
GTGCCACGTACTCCGGGGTGCCGCAGAAGGTCCACGTCTTAGAGCTCGTT
CCGATCTGCTTGGCAAAGCCGAAGTCCACGATCTTGACGTAGCCGCGCTC
ATCAAGCATCAGGTTCTCCGGCTTAAGGTCTCTATAGATGATCCCGCGGG
CATGCAAGTATTCAAACGCCTGCAGCACACACCCGATGATGAACTGCGCC
GCGTTGTCCTCGAAGGATCCGCGATCCCGGAGCATCGTCCATATCTCCCC
ACCCATGCAGGCCTCGAGCAGCATATACACGTACTTCTCGTCACGGAAGG
TGCGATACAAACGGCAGATGAAGGGCGATCTCGAACTGAGCATGATATGA
CGTTCACTGAAGATGTGCTCCTCCTGTTTGGTGTCCACATATGTCGCTTC
TTGAGGCACTTTAGGGCAAAGATATCCACGCGATCCTGATGGTGGGCCTT
GACCAGCTCCACCCGACCAAAGCCTCCGAT
BS07293.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3324-PA | 2307 | Pkg21D-RA | 1485..2307 | 839..17 | 4115 | 100 | Minus |
CG3324-PA | 2307 | Pkg21D-RA | 1393..1484 | 930..839 | 460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkg21D-RA | 2583 | CG3324-RA | 1562..2476 | 930..17 | 4550 | 99.9 | Minus |
CG3544-RB | 4359 | CG3544-RB | 2315..2881 | 365..930 | 2810 | 99.8 | Plus |
CG3544-RB | 4359 | CG3544-RB | 1925..2087 | 17..179 | 815 | 100 | Plus |
CG3544-RB | 4359 | CG3544-RB | 2091..2247 | 209..365 | 785 | 100 | Plus |
for-RK | 3223 | CG10033-RK | 2334..2653 | 742..423 | 340 | 74.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 786732..787298 | 365..930 | 2785 | 99.8 | Plus |
2L | 23513712 | 2L | 786476..786664 | 177..365 | 945 | 100 | Plus |
2L | 23513712 | 2L | 786260..786422 | 17..179 | 815 | 100 | Plus |
2L | 23513712 | 2L | 3623315..3623634 | 423..742 | 340 | 73.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:56:46 has no hits.
BS07293.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:27 Download gff for
BS07293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3324-PA | 1393..2307 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:57 Download gff for
BS07293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3324-PA | 1393..2307 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:16 Download gff for
BS07293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 1562..2484 | 9..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:18 Download gff for
BS07293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 1562..2484 | 9..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:18 Download gff for
BS07293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 786252..786422 | 9..179 | 97 | <- | Plus |
2L | 786479..786664 | 180..365 | 100 | <- | Plus |
2L | 786733..787298 | 366..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:16 Download gff for
BS07293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 786252..786422 | 9..179 | 97 | <- | Plus |
arm_2L | 786479..786664 | 180..365 | 100 | <- | Plus |
arm_2L | 786733..787298 | 366..930 | 99 | | Plus |
BS07293.5prime Sequence
957 bp (777 high quality bases) assembled on 2006-01-06
> BS07293.5prime
GAAGTTATCAGTCGACATGGCCGCTGGAATGTTGACTGATCGGGAGCGGG
AGGCGATCGTCAGCAATCTGACCAAGGACGTGCAGGCTCTGAGGGAAATG
GTGCGGAGTCGGGAGAGCGAGCTGGTCAAGCTGCACCGCGAAATCCACAA
GCTGAAGAGTGTTCTCCAGCAGACCACCAACAACCTGAACGTCACCCGAA
ATGAGAAGGCCAAAAAGAAGCTCTACTCCTTGCCAGAGCAATGTGGCGAG
CAGGAAAGTAGGAATCAGAATCCACATTTGTGCAGCTCCTGCGGCATGGT
GCTGCCCACCAGTCCGGAGTTTGCCCTGGAGGCGCTTTCTCTGGGACCGC
TGTCCCCATTAGCATCAACATCTTCCGCCTCCCCCTCTGGACGAACTTCT
GCTGATGAAGTGCGACCCAAGGCGATGCCCGCTGCTATCAAGAAACAAGG
TGTCTCCGCCGAGAGCTGTGTGCAGTCCATGCAGCAATCCTACAGCATAC
CGATTCCAAAATACGAAAAGGATTTCAGTGATAAGCAGCAAATCAAAGAC
GCCATTATGGACAATGACTTCCTAAAGAACATAGACGCATCGCAGGTGCG
GGAACTGGTAGATTCAATGTACTCCAAGAGCATAGCAGCCGGCGAGTTTG
TGATCCGCGAGGGTGAAGTGGGCGCACATCTGTACGTCTCCGCCGCCGGC
GAGTTTGCGGTGATGCAGCAGGGCAAGGTGCTGGACAAGATGGGGGCGGG
AAAGGCGTTTGGGGAGCTGGCTATCCTCTANCACTGCACCAGAACGGCCT
CCATTCGAGTCCTAAGTGAGGCCGCGAGGGTATGGGTGCTGGACAGACGG
GTCTTTCAGCAGATTATGATGTGCACGGGCCTCCAGCGAATCGAAAACAG
CGTGAACTTCCTGAGATCCGTGCCTCTGCTGATGAACCTTAGTGAGAAGC
TGCTGGC
BS07293.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3324-PA | 2307 | Pkg21D-RA | 1..941 | 17..957 | 4636 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkg21D-RA | 2583 | CG3324-RA | 170..1110 | 17..957 | 4664 | 99.7 | Plus |
CG3544-RB | 4359 | CG3544-RB | 3333..3764 | 957..526 | 2119 | 99.3 | Minus |
CG3544-RB | 4359 | CG3544-RB | 3825..4197 | 528..156 | 1865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 787750..788181 | 957..526 | 2119 | 99.3 | Minus |
2L | 23513712 | 2L | 788242..788614 | 528..156 | 1865 | 100 | Minus |
2L | 23513712 | 2L | 790489..790629 | 157..17 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:44:25 has no hits.
BS07293.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:28 Download gff for
BS07293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3324-PA | 1..941 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:56:58 Download gff for
BS07293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3324-PA | 1..941 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:32:29 Download gff for
BS07293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 168..1110 | 14..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:37 Download gff for
BS07293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 168..1110 | 14..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:37 Download gff for
BS07293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 787750..788178 | 529..957 | 99 | <- | Minus |
2L | 788242..788612 | 158..528 | 100 | <- | Minus |
2L | 790489..790631 | 14..157 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:32:29 Download gff for
BS07293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 787750..788178 | 529..957 | 99 | <- | Minus |
arm_2L | 788242..788612 | 158..528 | 100 | <- | Minus |
arm_2L | 790489..790631 | 14..157 | 99 | | Minus |
BS07293.complete Sequence
2339 bp assembled on 2008-01-02
GenBank Submission: FJ635807
> BS07293.complete
GAAGTTATCAGTCGACATGGCCGCTGGAATGTTGACTGATCGGGAGCGGG
AGGCGATCGTCAGCAATCTGACCAAGGACGTGCAGGCTCTGAGGGAAATG
GTGCGGAGTCGGGAGAGCGAGCTGGTCAAGCTGCACCGCGAAATCCACAA
GCTGAAGAGTGTTCTCCAGCAGACCACCAACAACCTGAACGTCACCCGAA
ATGAGAAGGCCAAAAAGAAGCTCTACTCCTTGCCAGAGCAATGTGGCGAG
CAGGAAAGTAGGAATCAGAATCCACATTTGTGCAGCTCCTGCGGCATGGT
GCTGCCCACCAGTCCGGAGTTTGCCCTGGAGGCGCTTTCTCTGGGACCGC
TGTCCCCATTAGCATCAACATCTTCCGCCTCCCCCTCTGGACGAACTTCT
GCTGATGAAGTGCGACCCAAGGCGATGCCCGCTGCTATCAAGAAACAAGG
TGTCTCCGCCGAGAGCTGTGTGCAGTCCATGCAGCAATCCTACAGCATAC
CGATTCCAAAATACGAAAAGGATTTCAGTGATAAGCAGCAAATCAAAGAC
GCCATTATGGACAATGACTTCCTAAAGAACATAGACGCATCGCAGGTGCG
GGAACTGGTAGATTCAATGTACTCCAAGAGCATAGCAGCCGGCGAGTTTG
TGATCCGCGAGGGTGAAGTGGGCGCACATCTGTACGTCTCCGCCGCCGGC
GAGTTTGCGGTGATGCAGCAGGGCAAGGTGCTGGACAAGATGGGGGCGGG
AAAGGCGTTTGGGGAGCTGGCTATCCTCTACAACTGCACCAGAACGGCCT
CCATTCGAGTCCTAAGTGAGGCCGCGAGGGTATGGGTGCTGGACAGACGG
GTCTTTCAGCAGATTATGATGTGCACGGGCCTCCAGCGAATCGAAAACAG
CGTGAACTTCCTGAGATCCGTGCCTCTGCTGATGAACCTTAGTGAGGAGC
TGCTGGCCAAGATAGCAGACGTTCTGGAGCTGGAGTTCTACGCCGCTGGC
ACCTACATCATCCGCCAAGGAACCGCCGGGGACAGTTTCTTCTTGATCTC
ACAGGGCAATGTCCGAGTGACCCAAAAACTAACTCCCACCTCCCCGGAGG
AAACGGAGTTGCGAACGCTATCCAGGGGAGACTATTTTGGAGAGCAGGCG
CTGATCAACGAGGATAAGCGAACGGCCAACATCATCGCACTGTCACCAGG
AGTTGAGTGCTTGACCCTGGACAGGGATTCCTTCAAGCGGCTAATTGGGG
ATCTATGCGAGCTGAAGGAGAAGGACTACGGCGATGAGAGCAGGAAGCTA
GCCATGAAGCAGGCGCAAGAAAGCTGCCGGGATGAGCCGAAGGAGCAGCT
GCAGCAGGAGTTCCCCGATCTCAAGCTCACGGACCTCGAGGTGGTCAGCA
CTCTTGGCATCGGAGGCTTTGGTCGGGTGGAGCTGGTCAAGGCCCACCAT
CAGGATCGCGTGGATATCTTTGCCCTAAAGTGCCTCAAGAAGCGACATAT
TGTGGACACCAAACAGGAGGAGCACATCTTCAGTGAACGTCATATCATGC
TCAGTTCGAGATCGCCCTTCATCTGCCGTTTGTATCGCACCTTCCGTGAC
GAGAAGTACGTGTATATGCTGCTCGAGGCCTGCATGGGTGGGGAGATATG
GACGATGCTCCGGGATCGCGGATCCTTCGAGGACAACGCGGCGCAGTTCA
TCATCGGGTGTGTGCTGCAGGCGTTTGAATACTTGCATGCCCGCGGGATC
ATCTATAGAGACCTTAAGCCGGAGAACCTGATGCTTGATGAGCGCGGCTA
CGTCAAGATCGTGGACTTCGGCTTTGCCAAGCAGATCGGAACGAGCTCTA
AGACGTGGACCTTCTGCGGCACCCCGGAGTACGTGGCACCCGAGATCATC
CTGAACAAGGGTCACGATCGAGCCGTAGACTACTGGGCTTTGGGCATTCT
CATTCATGAACTGCTCAACGGAACGCCACCGTTCAGTGCTCCAGATCCCA
TGCAGACGTACAATCTCATCCTGAAGGGCATTGACATGATAGCCTTTCCC
AAGCACATCTCCCGCTGGGCCGTGCAGCTCATCAAGCGACTGTGCCGCGA
TGTTCCATCGGAGCGCCTCGGCTACCAGACTGGTGGCATACAGGACATAA
AGAAACATAAGTGGTTCCTGGGATTCGACTGGGACGGCTTGGCCAGCCAG
CTGCTGATTCCGCCCTTCGTGAGACCCATCGCCCATCCGACGGATGTTCG
CTACTTCGACCGCTTTCCGTGCGATTTGAACGAGCCACCGGACGAGCTCT
CCGGCTGGGATGCGGATTTCTAGAAGCTTTCTAGACCAT
BS07293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkg21D-RA | 2307 | CG3324-PA | 1..2307 | 17..2323 | 11535 | 100 | Plus |
for-RK | 2685 | CG10033-PK | 1957..2276 | 1598..1917 | 340 | 73.8 | Plus |
for-RA | 3267 | CG10033-PA | 2539..2858 | 1598..1917 | 340 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkg21D-RA | 2583 | CG3324-RA | 170..2476 | 17..2323 | 11535 | 100 | Plus |
CG3544-RB | 4359 | CG3544-RB | 2315..3764 | 1975..526 | 7250 | 100 | Minus |
CG3544-RB | 4359 | CG3544-RB | 3825..4197 | 528..156 | 1865 | 100 | Minus |
CG3544-RB | 4359 | CG3544-RB | 1925..2087 | 2323..2161 | 815 | 100 | Minus |
CG3544-RB | 4359 | CG3544-RB | 2091..2247 | 2131..1975 | 785 | 100 | Minus |
for-RK | 3223 | CG10033-RK | 2334..2653 | 1598..1917 | 340 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 786732..788181 | 1975..526 | 7250 | 100 | Minus |
2L | 23513712 | 2L | 788242..788614 | 528..156 | 1865 | 100 | Minus |
2L | 23513712 | 2L | 786476..786664 | 2163..1975 | 945 | 100 | Minus |
2L | 23513712 | 2L | 786260..786422 | 2323..2161 | 815 | 100 | Minus |
2L | 23513712 | 2L | 790489..790629 | 157..17 | 705 | 100 | Minus |
2L | 23513712 | 2L | 3623315..3623634 | 1917..1598 | 340 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:12:57 has no hits.
BS07293.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:16 Download gff for
BS07293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 1..2307 | 17..2323 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:03 Download gff for
BS07293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 167..2473 | 17..2323 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:21 Download gff for
BS07293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 170..2476 | 17..2323 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:19 Download gff for
BS07293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 165..2481 | 14..2331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:20 Download gff for
BS07293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 170..2476 | 17..2323 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:20 Download gff for
BS07293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 786260..786422 | 2161..2323 | 100 | <- | Minus |
2L | 786479..786664 | 1975..2160 | 100 | <- | Minus |
2L | 786733..788178 | 529..1974 | 100 | <- | Minus |
2L | 788242..788612 | 158..528 | 100 | <- | Minus |
2L | 790489..790629 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:21 Download gff for
BS07293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 786260..786422 | 2161..2323 | 100 | <- | Minus |
arm_2L | 786479..786664 | 1975..2160 | 100 | <- | Minus |
arm_2L | 786733..788178 | 529..1974 | 100 | <- | Minus |
arm_2L | 788242..788612 | 158..528 | 100 | <- | Minus |
arm_2L | 790489..790629 | 17..157 | 100 | | Minus |
BS07293.pep Sequence
Translation from 16 to 2322
> BS07293.pep
MAAGMLTDREREAIVSNLTKDVQALREMVRSRESELVKLHREIHKLKSVL
QQTTNNLNVTRNEKAKKKLYSLPEQCGEQESRNQNPHLCSSCGMVLPTSP
EFALEALSLGPLSPLASTSSASPSGRTSADEVRPKAMPAAIKKQGVSAES
CVQSMQQSYSIPIPKYEKDFSDKQQIKDAIMDNDFLKNIDASQVRELVDS
MYSKSIAAGEFVIREGEVGAHLYVSAAGEFAVMQQGKVLDKMGAGKAFGE
LAILYNCTRTASIRVLSEAARVWVLDRRVFQQIMMCTGLQRIENSVNFLR
SVPLLMNLSEELLAKIADVLELEFYAAGTYIIRQGTAGDSFFLISQGNVR
VTQKLTPTSPEETELRTLSRGDYFGEQALINEDKRTANIIALSPGVECLT
LDRDSFKRLIGDLCELKEKDYGDESRKLAMKQAQESCRDEPKEQLQQEFP
DLKLTDLEVVSTLGIGGFGRVELVKAHHQDRVDIFALKCLKKRHIVDTKQ
EEHIFSERHIMLSSRSPFICRLYRTFRDEKYVYMLLEACMGGEIWTMLRD
RGSFEDNAAQFIIGCVLQAFEYLHARGIIYRDLKPENLMLDERGYVKIVD
FGFAKQIGTSSKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIHELL
NGTPPFSAPDPMQTYNLILKGIDMIAFPKHISRWAVQLIKRLCRDVPSER
LGYQTGGIQDIKKHKWFLGFDWDGLASQLLIPPFVRPIAHPTDVRYFDRF
PCDLNEPPDELSGWDADF*
BS07293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkg21D-PA | 768 | CG3324-PA | 1..768 | 1..768 | 3976 | 100 | Plus |
for-PA | 1088 | CG10033-PA | 433..1088 | 108..768 | 1702 | 50.7 | Plus |
for-PI | 1088 | CG10033-PI | 433..1088 | 108..768 | 1702 | 50.7 | Plus |
for-PH | 1088 | CG10033-PH | 433..1088 | 108..768 | 1702 | 50.7 | Plus |
for-PK | 894 | CG10033-PK | 369..894 | 228..768 | 1508 | 54.1 | Plus |