Clone BS07296 Report

Search the DGRC for BS07296

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG1809-RA
Protein status:BS07296.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07296.3prime Sequence

931 bp (866 high quality bases) assembled on 2006-01-06

> BS07296.3prime
ATGGTCTAGAAAGCTTCTAGGCATAGGGCCCGATACCCGCTGCTCTGGCC
ATCAGCGCCGGAATATTGCTTTGCTCGTAGTTGCCACTGAAGTACTGGGC
ATAGGGTCCCGAGGCATACACCGCCACATCATCTCCTCCGTGGGTTTCTG
CGTCCAAGGGCGCCAGCGTGGGATACTGATAGTCTGAGTCCGCAACCAAC
TTCTCCTTTAGAAGGGCACGTCCCTCAGCGCGATTGTAGCCGGAGTAGTA
GCCAGGTCCATTGGCATAGGACAAAATCGTATAGGGCAGATTATCATCCG
CCAGTTGAGCCAATCCGGTGATCTCCTGGTCACGATAAGGATAACCATTG
ATGGACATAACATGAGCATGATCAGCGGTCACCACGATCAGTGTGTCATC
CTCGGAGGTAAGTTCGCGAGCCTTCTGGACAGCCCTCGCAAACTCGGCGG
TATCCTCGAGGGATCTCTTGGCGAAGGTATCGTGGTGGGCCATGTCGATA
CGAGCACCCTCGACGAAGAGAAAGAATCCCTTGTCATTGCGGCTCAACAC
CGTGATGGCAGCCTCCGTGAGCTCACTCAGCGAAGGATCCGCCAACTGAC
TACGTTTCCTGTCCCGATCACCGTTGTACGGCAGATGATCATTGGCAAAG
AGACCCAATAGGTAGTCCGTATTCTCGAGATCCACCAGACTGAGTCCCTT
GCGACTCCACACGTATTTGGCTGAGACATTGGCCTCCTTCTTCTGATCCA
ACCAACTGCGGATTAAGTGACGACCGTCGGTACGCTTGCCGGGATAACCC
TCCTCATCATTTACCGTTGCGTCGATGAAGTTCTTGCGACCGCCTCCAAG
GATTACCTTCAGCTGCTGACCCACAGGCTGCTCCACGAGCTGACGGGCAA
TATCGATGGTCTGCTCGGGATCGCACTCCCT

BS07296.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-PA 1548 CG1809-RA 634..1548 931..17 4575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-RA 1686 CG1809-RA 695..1609 931..17 4575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9562812..9563405 931..338 2970 100 Minus
2R 25286936 2R 9563474..9563794 337..17 1605 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:15:08 has no hits.

BS07296.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:31 Download gff for BS07296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-PA 634..1548 17..931 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:03 Download gff for BS07296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-PA 634..1548 17..931 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:28 Download gff for BS07296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 695..1614 10..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:14 Download gff for BS07296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 695..1614 10..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:14 Download gff for BS07296.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9562812..9563405 338..931 100 -> Minus
2R 9563474..9563799 10..337 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:28 Download gff for BS07296.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5450317..5450910 338..931 100 -> Minus
arm_2R 5450979..5451304 10..337 99   Minus

BS07296.5prime Sequence

815 bp (814 high quality bases) assembled on 2006-01-06

> BS07296.5prime
GAAGTTATCAGTCGACATGGCCAGGAGATTCATTCTGTTGCTCGTCTTAG
CTGTCTGCCTGAGCGGAAGTGCCAGCGGACAAAGAGACCACCCTCGTGGG
CGTTCCTTTGATGCCGAATCGCATCCGATCAAGTATGCAGAGGAGCAGCA
GACCCAGTACTGGGTGGATAAGGCCCAGGCGAAGCTGTTATCGAAGCTGG
CCGAGCAGGAGTCCGCGACCACAAACAAGGCGAAGAACGTGATTCTGTTC
CTGGGCGATGGAATGTCCGTTCACACGGTCACGGCCACCAGGAATCTGCT
AGGCGACAGTGCGGAGCAGGTGTACTTTGAGGGATTTCCCTACACTGGCT
TGTCCAAGACCTACTGCGTAAACCGCCAGGTGGCCGATTCTGCTTGCACG
GCCACCGCCTATTTGGGCGGTGTGAAGGCGAACTATGGAACGATTGGCGT
TAACGCCAATGTGTCCAGGTACAGCTGTGATGGCGCCGCCAACGAGGAGG
ATCGGGTGCTCAGCATCGCGCATTGGGCACAGGCGGCTGGCAAGGATGCA
GGTCTGGTGACTACAGCCCGGGTAACTCATGCATCCCCAGCTGGTGTTTA
TGCCCACATCGCGGATCGCAATTGGGAGAACGACTGGGAGGTGGCCAACA
GGGAGTGCGATCCCGAGCAGACCATCGATATTGCCCGTCAGCTCGTGGAG
CAGCCTGTGGGTCAGCAGCTGAAGGTAATCCTTGGAGGCGGTCGCAAGAA
CTTCATCGACGCAACGGTAAATGATGAGGAGGGTTATCCCGGCAAGCGTA
CCGACGGTCGTCACT

BS07296.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-PA 1548 CG1809-RA 1..799 17..815 3995 100 Plus
CG8105-PA 1452 CG8105-RA 382..414 395..427 140 96.9 Plus
CG8147-PA 1641 CG8147-RA 421..488 377..444 140 88.2 Plus
CG8147-PB 1641 CG8147-RB 421..488 377..444 140 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-RA 1686 CG1809-RA 62..860 17..815 3995 100 Plus
CG8147-RA 1862 CG8147-RA 486..575 355..444 225 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9562247..9562977 85..815 3655 100 Plus
2R 25286936 2R 9561699..9561768 17..86 350 100 Plus
3R 32079331 3R 9495347..9495436 355..444 225 83.3 Plus
Blast to na_te.dros performed on 2015-02-13 00:26:33 has no hits.

BS07296.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:32 Download gff for BS07296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-PA 1..799 17..815 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:05 Download gff for BS07296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-PA 1..799 17..815 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:24:26 Download gff for BS07296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 62..860 17..815 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:58 Download gff for BS07296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 62..860 17..815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:58 Download gff for BS07296.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9561699..9561768 17..86 100 -> Plus
2R 9562249..9562977 87..815 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:24:26 Download gff for BS07296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5449204..5449273 17..86 100 -> Plus
arm_2R 5449754..5450482 87..815 100   Plus

BS07296.complete Sequence

1580 bp (1580 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635808

> BS07296.complete
GAAGTTATCAGTCGACATGGCCAGGAGATTCATTCTGTTGCTCGTCTTAG
CTGTCTGCCTGAGCGGAAGTGCCAGCGGACAAAGAGACCACCCTCGTGGG
CGTTCCTTTGATGCCGAATCGCATCCGATCAAGTATGCAGAGGAGCAGCA
GACCCAGTACTGGGTGGATAAGGCCCAGGCGAAGCTGTTATCGAAGCTGG
CCGAGCAGGAGTCCGCGACCACAAACAAGGCGAAGAACGTGATTCTGTTC
CTGGGCGATGGAATGTCCGTTCACACGGTCACGGCCACCAGGAATCTGCT
AGGCGACAGTGCGGAGCAGGTGTACTTTGAGGGATTTCCCTACACTGGCT
TGTCCAAGACCTACTGCGTAAACCGCCAGGTGGCCGATTCTGCTTGCACG
GCCACCGCCTATTTGGGCGGTGTGAAGGCGAACTATGGAACGATTGGCGT
TAACGCCAATGTGTCCAGGTACAGCTGTGATGGCGCCGCCAACGAGGAGG
ATCGGGTGCTCAGCATCGCGCATTGGGCACAGGCGGCTGGCAAGGATGCA
GGTCTGGTGACTACAGCCCGGGTAACTCATGCATCCCCAGCTGGTGTTTA
TGCCCACATCGCGGATCGCAATTGGGAGAACGACTGGGAGGTGGCCAACA
GGGAGTGCGATCCCGAGCAGACCATCGATATTGCCCGTCAGCTCGTGGAG
CAGCCTGTGGGTCAGCAGCTGAAGGTAATCCTTGGAGGCGGTCGCAAGAA
CTTCATCGACGCAACGGTAAATGATGAGGAGGGTTATCCCGGCAAGCGTA
CCGACGGTCGTCACTTAATCCGCAGTTGGTTGGATCAGAAGAAGGAGGCC
AATGTCTCAGCCAAATACGTGTGGAGTCGCAAGGGACTCAGTCTGGTGGA
TCTCGAGAATACGGACTACCTATTGGGTCTCTTTGCCAATGATCATCTGC
CGTACAACGGTGATCGGGACAGGAAACGTAGTCAGTTGGCGGATCCTTCG
CTGAGTGAGCTCACGGAGGCTGCCATCACGGTGTTGAGCCGCAATGACAA
GGGATTCTTTCTCTTCGTCGAGGGTGCTCGTATCGACATGGCCCACCACG
ATACCTTCGCCAAGAGATCCCTCGAGGATACCGCCGAGTTTGCGAGGGCT
GTCCAGAAGGCTCGCGAACTTACCTCCGAGGATGACACACTGATCGTGGT
GACCGCTGATCATGCTCATGTTATGTCCATCAATGGTTATCCTTATCGTG
ACCAGGAGATCACCGGATTGGCTCAACTGGCGGATGATAATCTGCCCTAT
ACGATTTTGTCCTATGCCAATGGACCTGGCTACTACTCCGGCTACAATCG
CGCTGAGGGACGTGCCCTTCTAAAGGAGAAGTTGGTTGCGGACTCAGACT
ATCAGTATCCCACGCTGGCGCCCTTGGACGCAGAAACCCACGGAGGAGAT
GATGTGGCGGTGTATGCCTCGGGACCCTATGCCCAGTACTTCAGTGGCAA
CTACGAGCAAAGCAATATTCCGGCGCTGATGGCCAGAGCAGCGGGTATCG
GGCCCTATGCCTAGAAGCTTTCTAGACCAT

BS07296.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-RA 1548 CG1809-PA 1..1548 17..1564 7740 100 Plus
CG8147-RA 1641 CG8147-PA 399..488 355..444 225 83.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-RA 1686 CG1809-RA 62..1609 17..1564 7740 100 Plus
CG8147-RA 1862 CG8147-RA 486..575 355..444 225 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9562247..9563405 85..1243 5795 100 Plus
2R 25286936 2R 9563474..9563794 1244..1564 1605 100 Plus
2R 25286936 2R 9561699..9561768 17..86 350 100 Plus
3R 32079331 3R 9495347..9495436 355..444 225 83.3 Plus
Blast to na_te.dros performed on 2014-11-27 23:38:10 has no hits.

BS07296.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:41 Download gff for BS07296.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 1..1548 17..1564 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:59 Download gff for BS07296.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 51..1603 17..1571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:05 Download gff for BS07296.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 62..1609 17..1564 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:41 Download gff for BS07296.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 51..1603 17..1571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:05 Download gff for BS07296.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 62..1609 17..1564 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:05 Download gff for BS07296.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9561699..9561768 17..86 100 -> Plus
2R 9562249..9563405 87..1243 100 -> Plus
2R 9563474..9563794 1244..1564 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:05 Download gff for BS07296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5449204..5449273 17..86 100 -> Plus
arm_2R 5449754..5450910 87..1243 100 -> Plus
arm_2R 5450979..5451299 1244..1564 100   Plus

BS07296.pep Sequence

Translation from 16 to 1563

> BS07296.pep
MARRFILLLVLAVCLSGSASGQRDHPRGRSFDAESHPIKYAEEQQTQYWV
DKAQAKLLSKLAEQESATTNKAKNVILFLGDGMSVHTVTATRNLLGDSAE
QVYFEGFPYTGLSKTYCVNRQVADSACTATAYLGGVKANYGTIGVNANVS
RYSCDGAANEEDRVLSIAHWAQAAGKDAGLVTTARVTHASPAGVYAHIAD
RNWENDWEVANRECDPEQTIDIARQLVEQPVGQQLKVILGGGRKNFIDAT
VNDEEGYPGKRTDGRHLIRSWLDQKKEANVSAKYVWSRKGLSLVDLENTD
YLLGLFANDHLPYNGDRDRKRSQLADPSLSELTEAAITVLSRNDKGFFLF
VEGARIDMAHHDTFAKRSLEDTAEFARAVQKARELTSEDDTLIVVTADHA
HVMSINGYPYRDQEITGLAQLADDNLPYTILSYANGPGYYSGYNRAEGRA
LLKEKLVADSDYQYPTLAPLDAETHGGDDVAVYASGPYAQYFSGNYEQSN
IPALMARAAGIGPYA*

BS07296.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-PA 515 CG1809-PA 1..515 1..515 2679 100 Plus
CG10592-PA 524 CG10592-PA 11..517 5..515 1488 57.9 Plus
CG8147-PA 546 CG8147-PA 1..528 1..509 1187 49.4 Plus
CG5656-PA 523 CG5656-PA 3..508 2..513 1101 47.8 Plus
CG10827-PA 522 CG10827-PA 57..515 43..512 1093 50.1 Plus