Clone Sequence Records
BS07296.3prime Sequence
931 bp (866 high quality bases) assembled on 2006-01-06
> BS07296.3prime
ATGGTCTAGAAAGCTTCTAGGCATAGGGCCCGATACCCGCTGCTCTGGCC
ATCAGCGCCGGAATATTGCTTTGCTCGTAGTTGCCACTGAAGTACTGGGC
ATAGGGTCCCGAGGCATACACCGCCACATCATCTCCTCCGTGGGTTTCTG
CGTCCAAGGGCGCCAGCGTGGGATACTGATAGTCTGAGTCCGCAACCAAC
TTCTCCTTTAGAAGGGCACGTCCCTCAGCGCGATTGTAGCCGGAGTAGTA
GCCAGGTCCATTGGCATAGGACAAAATCGTATAGGGCAGATTATCATCCG
CCAGTTGAGCCAATCCGGTGATCTCCTGGTCACGATAAGGATAACCATTG
ATGGACATAACATGAGCATGATCAGCGGTCACCACGATCAGTGTGTCATC
CTCGGAGGTAAGTTCGCGAGCCTTCTGGACAGCCCTCGCAAACTCGGCGG
TATCCTCGAGGGATCTCTTGGCGAAGGTATCGTGGTGGGCCATGTCGATA
CGAGCACCCTCGACGAAGAGAAAGAATCCCTTGTCATTGCGGCTCAACAC
CGTGATGGCAGCCTCCGTGAGCTCACTCAGCGAAGGATCCGCCAACTGAC
TACGTTTCCTGTCCCGATCACCGTTGTACGGCAGATGATCATTGGCAAAG
AGACCCAATAGGTAGTCCGTATTCTCGAGATCCACCAGACTGAGTCCCTT
GCGACTCCACACGTATTTGGCTGAGACATTGGCCTCCTTCTTCTGATCCA
ACCAACTGCGGATTAAGTGACGACCGTCGGTACGCTTGCCGGGATAACCC
TCCTCATCATTTACCGTTGCGTCGATGAAGTTCTTGCGACCGCCTCCAAG
GATTACCTTCAGCTGCTGACCCACAGGCTGCTCCACGAGCTGACGGGCAA
TATCGATGGTCTGCTCGGGATCGCACTCCCT
BS07296.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-PA | 1548 | CG1809-RA | 634..1548 | 931..17 | 4575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-RA | 1686 | CG1809-RA | 695..1609 | 931..17 | 4575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9562812..9563405 | 931..338 | 2970 | 100 | Minus |
2R | 25286936 | 2R | 9563474..9563794 | 337..17 | 1605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:15:08 has no hits.
BS07296.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:31 Download gff for
BS07296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-PA | 634..1548 | 17..931 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:03 Download gff for
BS07296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-PA | 634..1548 | 17..931 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:28 Download gff for
BS07296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 695..1614 | 10..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:14 Download gff for
BS07296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 695..1614 | 10..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:14 Download gff for
BS07296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9562812..9563405 | 338..931 | 100 | -> | Minus |
2R | 9563474..9563799 | 10..337 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:28 Download gff for
BS07296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5450317..5450910 | 338..931 | 100 | -> | Minus |
arm_2R | 5450979..5451304 | 10..337 | 99 | | Minus |
BS07296.5prime Sequence
815 bp (814 high quality bases) assembled on 2006-01-06
> BS07296.5prime
GAAGTTATCAGTCGACATGGCCAGGAGATTCATTCTGTTGCTCGTCTTAG
CTGTCTGCCTGAGCGGAAGTGCCAGCGGACAAAGAGACCACCCTCGTGGG
CGTTCCTTTGATGCCGAATCGCATCCGATCAAGTATGCAGAGGAGCAGCA
GACCCAGTACTGGGTGGATAAGGCCCAGGCGAAGCTGTTATCGAAGCTGG
CCGAGCAGGAGTCCGCGACCACAAACAAGGCGAAGAACGTGATTCTGTTC
CTGGGCGATGGAATGTCCGTTCACACGGTCACGGCCACCAGGAATCTGCT
AGGCGACAGTGCGGAGCAGGTGTACTTTGAGGGATTTCCCTACACTGGCT
TGTCCAAGACCTACTGCGTAAACCGCCAGGTGGCCGATTCTGCTTGCACG
GCCACCGCCTATTTGGGCGGTGTGAAGGCGAACTATGGAACGATTGGCGT
TAACGCCAATGTGTCCAGGTACAGCTGTGATGGCGCCGCCAACGAGGAGG
ATCGGGTGCTCAGCATCGCGCATTGGGCACAGGCGGCTGGCAAGGATGCA
GGTCTGGTGACTACAGCCCGGGTAACTCATGCATCCCCAGCTGGTGTTTA
TGCCCACATCGCGGATCGCAATTGGGAGAACGACTGGGAGGTGGCCAACA
GGGAGTGCGATCCCGAGCAGACCATCGATATTGCCCGTCAGCTCGTGGAG
CAGCCTGTGGGTCAGCAGCTGAAGGTAATCCTTGGAGGCGGTCGCAAGAA
CTTCATCGACGCAACGGTAAATGATGAGGAGGGTTATCCCGGCAAGCGTA
CCGACGGTCGTCACT
BS07296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-PA | 1548 | CG1809-RA | 1..799 | 17..815 | 3995 | 100 | Plus |
CG8105-PA | 1452 | CG8105-RA | 382..414 | 395..427 | 140 | 96.9 | Plus |
CG8147-PA | 1641 | CG8147-RA | 421..488 | 377..444 | 140 | 88.2 | Plus |
CG8147-PB | 1641 | CG8147-RB | 421..488 | 377..444 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-RA | 1686 | CG1809-RA | 62..860 | 17..815 | 3995 | 100 | Plus |
CG8147-RA | 1862 | CG8147-RA | 486..575 | 355..444 | 225 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9562247..9562977 | 85..815 | 3655 | 100 | Plus |
2R | 25286936 | 2R | 9561699..9561768 | 17..86 | 350 | 100 | Plus |
3R | 32079331 | 3R | 9495347..9495436 | 355..444 | 225 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:26:33 has no hits.
BS07296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:32 Download gff for
BS07296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:05 Download gff for
BS07296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:24:26 Download gff for
BS07296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 62..860 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:58 Download gff for
BS07296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 62..860 | 17..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:58 Download gff for
BS07296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9561699..9561768 | 17..86 | 100 | -> | Plus |
2R | 9562249..9562977 | 87..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:24:26 Download gff for
BS07296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5449204..5449273 | 17..86 | 100 | -> | Plus |
arm_2R | 5449754..5450482 | 87..815 | 100 | | Plus |
BS07296.complete Sequence
1580 bp (1580 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635808
> BS07296.complete
GAAGTTATCAGTCGACATGGCCAGGAGATTCATTCTGTTGCTCGTCTTAG
CTGTCTGCCTGAGCGGAAGTGCCAGCGGACAAAGAGACCACCCTCGTGGG
CGTTCCTTTGATGCCGAATCGCATCCGATCAAGTATGCAGAGGAGCAGCA
GACCCAGTACTGGGTGGATAAGGCCCAGGCGAAGCTGTTATCGAAGCTGG
CCGAGCAGGAGTCCGCGACCACAAACAAGGCGAAGAACGTGATTCTGTTC
CTGGGCGATGGAATGTCCGTTCACACGGTCACGGCCACCAGGAATCTGCT
AGGCGACAGTGCGGAGCAGGTGTACTTTGAGGGATTTCCCTACACTGGCT
TGTCCAAGACCTACTGCGTAAACCGCCAGGTGGCCGATTCTGCTTGCACG
GCCACCGCCTATTTGGGCGGTGTGAAGGCGAACTATGGAACGATTGGCGT
TAACGCCAATGTGTCCAGGTACAGCTGTGATGGCGCCGCCAACGAGGAGG
ATCGGGTGCTCAGCATCGCGCATTGGGCACAGGCGGCTGGCAAGGATGCA
GGTCTGGTGACTACAGCCCGGGTAACTCATGCATCCCCAGCTGGTGTTTA
TGCCCACATCGCGGATCGCAATTGGGAGAACGACTGGGAGGTGGCCAACA
GGGAGTGCGATCCCGAGCAGACCATCGATATTGCCCGTCAGCTCGTGGAG
CAGCCTGTGGGTCAGCAGCTGAAGGTAATCCTTGGAGGCGGTCGCAAGAA
CTTCATCGACGCAACGGTAAATGATGAGGAGGGTTATCCCGGCAAGCGTA
CCGACGGTCGTCACTTAATCCGCAGTTGGTTGGATCAGAAGAAGGAGGCC
AATGTCTCAGCCAAATACGTGTGGAGTCGCAAGGGACTCAGTCTGGTGGA
TCTCGAGAATACGGACTACCTATTGGGTCTCTTTGCCAATGATCATCTGC
CGTACAACGGTGATCGGGACAGGAAACGTAGTCAGTTGGCGGATCCTTCG
CTGAGTGAGCTCACGGAGGCTGCCATCACGGTGTTGAGCCGCAATGACAA
GGGATTCTTTCTCTTCGTCGAGGGTGCTCGTATCGACATGGCCCACCACG
ATACCTTCGCCAAGAGATCCCTCGAGGATACCGCCGAGTTTGCGAGGGCT
GTCCAGAAGGCTCGCGAACTTACCTCCGAGGATGACACACTGATCGTGGT
GACCGCTGATCATGCTCATGTTATGTCCATCAATGGTTATCCTTATCGTG
ACCAGGAGATCACCGGATTGGCTCAACTGGCGGATGATAATCTGCCCTAT
ACGATTTTGTCCTATGCCAATGGACCTGGCTACTACTCCGGCTACAATCG
CGCTGAGGGACGTGCCCTTCTAAAGGAGAAGTTGGTTGCGGACTCAGACT
ATCAGTATCCCACGCTGGCGCCCTTGGACGCAGAAACCCACGGAGGAGAT
GATGTGGCGGTGTATGCCTCGGGACCCTATGCCCAGTACTTCAGTGGCAA
CTACGAGCAAAGCAATATTCCGGCGCTGATGGCCAGAGCAGCGGGTATCG
GGCCCTATGCCTAGAAGCTTTCTAGACCAT
BS07296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-RA | 1548 | CG1809-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
CG8147-RA | 1641 | CG8147-PA | 399..488 | 355..444 | 225 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-RA | 1686 | CG1809-RA | 62..1609 | 17..1564 | 7740 | 100 | Plus |
CG8147-RA | 1862 | CG8147-RA | 486..575 | 355..444 | 225 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9562247..9563405 | 85..1243 | 5795 | 100 | Plus |
2R | 25286936 | 2R | 9563474..9563794 | 1244..1564 | 1605 | 100 | Plus |
2R | 25286936 | 2R | 9561699..9561768 | 17..86 | 350 | 100 | Plus |
3R | 32079331 | 3R | 9495347..9495436 | 355..444 | 225 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:38:10 has no hits.
BS07296.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:41 Download gff for
BS07296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 1..1548 | 17..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:59 Download gff for
BS07296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 51..1603 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:05 Download gff for
BS07296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 62..1609 | 17..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:41 Download gff for
BS07296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 51..1603 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:05 Download gff for
BS07296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 62..1609 | 17..1564 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:05 Download gff for
BS07296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9561699..9561768 | 17..86 | 100 | -> | Plus |
2R | 9562249..9563405 | 87..1243 | 100 | -> | Plus |
2R | 9563474..9563794 | 1244..1564 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:05 Download gff for
BS07296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5449204..5449273 | 17..86 | 100 | -> | Plus |
arm_2R | 5449754..5450910 | 87..1243 | 100 | -> | Plus |
arm_2R | 5450979..5451299 | 1244..1564 | 100 | | Plus |
BS07296.pep Sequence
Translation from 16 to 1563
> BS07296.pep
MARRFILLLVLAVCLSGSASGQRDHPRGRSFDAESHPIKYAEEQQTQYWV
DKAQAKLLSKLAEQESATTNKAKNVILFLGDGMSVHTVTATRNLLGDSAE
QVYFEGFPYTGLSKTYCVNRQVADSACTATAYLGGVKANYGTIGVNANVS
RYSCDGAANEEDRVLSIAHWAQAAGKDAGLVTTARVTHASPAGVYAHIAD
RNWENDWEVANRECDPEQTIDIARQLVEQPVGQQLKVILGGGRKNFIDAT
VNDEEGYPGKRTDGRHLIRSWLDQKKEANVSAKYVWSRKGLSLVDLENTD
YLLGLFANDHLPYNGDRDRKRSQLADPSLSELTEAAITVLSRNDKGFFLF
VEGARIDMAHHDTFAKRSLEDTAEFARAVQKARELTSEDDTLIVVTADHA
HVMSINGYPYRDQEITGLAQLADDNLPYTILSYANGPGYYSGYNRAEGRA
LLKEKLVADSDYQYPTLAPLDAETHGGDDVAVYASGPYAQYFSGNYEQSN
IPALMARAAGIGPYA*
BS07296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-PA | 515 | CG1809-PA | 1..515 | 1..515 | 2679 | 100 | Plus |
CG10592-PA | 524 | CG10592-PA | 11..517 | 5..515 | 1488 | 57.9 | Plus |
CG8147-PA | 546 | CG8147-PA | 1..528 | 1..509 | 1187 | 49.4 | Plus |
CG5656-PA | 523 | CG5656-PA | 3..508 | 2..513 | 1101 | 47.8 | Plus |
CG10827-PA | 522 | CG10827-PA | 57..515 | 43..512 | 1093 | 50.1 | Plus |