Clone BS07307 Report

Search the DGRC for BS07307

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptNup62-RA
Protein status:BS07307.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07307.3prime Sequence

949 bp (867 high quality bases) assembled on 2006-01-06

> BS07307.3prime
ATGGTCTAGAAAGCTTTTAGAAAGGAGCTCGGAAAATATCGCGTTTCTGG
GAGTCTTGAATCTTGCCAATGTCTTCCAGCTTCTTGCTGATGTTCGTCGA
CTGCGATTCGATCCACTGCAACGAATTCATATGGGCATTAAGGATTTTTC
CGATCTGTATGATGGGATCAGTGGTGTCCTGGCCCTTGTTGGCCTCGTTC
AAGTTGTCTATTATCTCCTTTAGATCCTCGGACATCTGCTTCAGTTGTGT
GTCCAGATTCTCCACCATCAGGTAGGTTTGGCTGCGTTCCATGTCCACCC
TCGGGAGATTAACGAATTCCTTCTCAAGCGGTCCCAGGCTGTCCTCAAGC
TCTTTTTGCTGCGTGGCTATAAACTCCAGCTCCTGGTCCAGCACTTGCTG
ATCGGTTTTCACTTTTTTCACGGCATCGTTGAGCTCGACGATCTTCCCGT
TGTTGCTGATGAGCAGTTTGTCCCATGCGTTGATCTGAGTGGCCTGTTCG
GTGAATACCTTTTCCTGTTCCTCGAACTCGAGAGTCCACTTGTTGATATG
CTCCTCAAGTTGGTGGTAGGACAATTGGGATGCCGTGGAAACGGCCGATG
AGTCTGTGGTCTTGGTTTCGGTAGTGAGATTGGCAAAAGCACCACCAGTA
CTTAAAGTTGGGGCCGGTGCAGCTCCCTGCGTGGAGGCTATGGCCGACGG
AGCTGCAGTCAGAGTTGTGGACGCAGCGGCCGTGGTCTTGGGAGCTCCCA
ATCCAGACCCGCCCAGCAATCCAGTTGTGGTAGCTGCGGTGTTGGGTGCA
CTGGTTGCTATAGTTGGCACCACAGATGCCGCTGGTTGAGCCGTAAAGCC
TCCGAAGGCGGGAGGAGCAGCAGAGGTTCCAGTCGCGGTCGCAGAAGTGG
TGGACGCTGGATTTGCCGCGGCTTGAGTGCCCAGCGTGAGGGGAGCTGA

BS07307.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6251-PA 1185 Nup62-RA 253..1185 949..17 4640 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Nup62-RB 1345 CG6251-RB 350..1283 949..16 4655 99.9 Minus
Nup62-RA 1452 CG6251-RA 457..1390 949..16 4655 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16344833..16345766 949..16 4655 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 18:58:12 has no hits.

BS07307.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:46 Download gff for BS07307.3prime
Subject Subject Range Query Range Percent Splice Strand
Nup62-PA 254..1185 17..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:26 Download gff for BS07307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6251-PA 254..1185 17..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:08:20 Download gff for BS07307.3prime
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 458..1390 16..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:32 Download gff for BS07307.3prime
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 458..1390 16..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:32 Download gff for BS07307.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16344834..16345766 16..948 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:08:20 Download gff for BS07307.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12232339..12233271 16..948 99   Minus

BS07307.5prime Sequence

847 bp (806 high quality bases) assembled on 2006-01-06

> BS07307.5prime
GAAGTTATCAGTCGACATGGTATTCCAGTTGCCAACAACAACCGCCGCCC
CGACCGGAGGCGCAACATCGTCGTTTTCCTTCGGCCTCAGCACAGGAACA
CCAGCCGCAGCACCAGCTTCAGGAGCAGCAACCACGGCTCCCGCCACAAA
AACCACATTCTCTTTCGGAACACCGGCACCTACTGCTGGTATCGGTGGCG
GAGATGCAGACAACAGCAAGGCGCAGGCTCCACCAGCCTTTGGATTTGGC
CTGGGATCCGGGACTGCTTCAGCTCCCCTCACGCTGGGCACTCAAGCCGC
CGCAAATCCAGCGTCCACCACTTCTGCGACCGCGACTGGAACCTCTGCTG
CTCCTCCCGCCTTCGGAGGCTTTACGGCTCAACCAGCGGCATCTGTGGTG
CCAACTATAGCAACCAGTGCACCCAACACCGCAGCTACCACAACTGGATT
GCTGGGCGGGTCTGGATTGGGAGCTCCCAAGACCACGGCCGCTGCGTCCA
CAACTCTGACTGCAGCTCCGTCGGCCATAGCCTCCACGCAGGGAGCTGCA
CCGGCCCCAACTTTAAGTACTGGTGGTGCTTTTGCCAATCTCACTACCGA
AACCAAGACCACAGACTCATCGGCCGTTTCCACGGCATCCCAATTGTCCT
ACCACCAACTTGAGGAGCATATCAACAAGTGGACTCTCGAGTTCGAGGAA
CAGGAAAAGGTATTCACCGAACAGGCCACTCAGATCAACGCATGGGACAA
ACTGCTCATCAGCAACAACGGGAAGATCGTCGAGCTCAACGATGCCGTGA
AAAAGTGAAAACCGATCAGCAAGTGCTGGACCAGGAGCTGGAGTTTA

BS07307.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6251-PA 1185 Nup62-RA 1..788 17..804 3940 100 Plus
CG6251-PA 1185 Nup62-RA 785..832 800..847 240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Nup62-RB 1345 CG6251-RB 97..929 16..847 4140 99.9 Plus
Nup62-RA 1452 CG6251-RA 204..1036 16..847 4140 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16344580..16345412 16..847 4115 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 20:25:57 has no hits.

BS07307.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:47 Download gff for BS07307.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup62-PA 1..831 17..846 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:28 Download gff for BS07307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6251-PA 1..831 17..846 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:04 Download gff for BS07307.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 204..1035 16..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:03 Download gff for BS07307.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 204..1035 16..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:03 Download gff for BS07307.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16344580..16345411 16..846 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:04 Download gff for BS07307.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12232085..12232916 16..846 99   Plus

BS07307.complete Sequence

1217 bp (1217 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635811

> BS07307.complete
GAAGTTATCAGTCGACATGGTATTCCAGTTGCCAACAACAACCGCCGCCC
CGACCGGAGGCGCAACATCGTCGTTTTCCTTCGGCCTCAGCACAGGAACA
CCAGCCGCAGCACCAGCTTCAGGAGCAGCAACCACGGCTCCCGCCACAAA
AACCACATTCTCTTTCGGAACACCGGCACCTACTGCTGGTATCGGTGGCG
GAGATGCAGACAACAGCAAGGCGCAGGCTCCACCAGCCTTTGGATTTGGC
CTGGGATCCGGGACTGCTTCAGCTCCCCTCACGCTGGGCACTCAAGCCGC
CGCAAATCCAGCGTCCACCACTTCTGCGACCGCGACTGGAACCTCTGCTG
CTCCTCCCGCCTTCGGAGGCTTTACGGCTCAACCAGCGGCATCTGTGGTG
CCAACTATAGCAACCAGTGCACCCAACACCGCAGCTACCACAACTGGATT
GCTGGGCGGGTCTGGATTGGGAGCTCCCAAGACCACGGCCGCTGCGTCCA
CAACTCTGACTGCAGCTCCGTCGGCCATAGCCTCCACGCAGGGAGCTGCA
CCGGCCCCAACTTTAAGTACTGGTGGTGCTTTTGCCAATCTCACTACCGA
AACCAAGACCACAGACTCATCGGCCGTTTCCACGGCATCCCAATTGTCCT
ACCACCAACTTGAGGAGCATATCAACAAGTGGACTCTCGAGTTCGAGGAA
CAGGAAAAGGTATTCACCGAACAGGCCACTCAGATCAACGCATGGGACAA
ACTGCTCATCAGCAACAACGGGAAGATCGTCGAGCTCAACGATGCCGTGA
AAAAAGTGAAAACCGATCAGCAAGTGCTGGACCAGGAGCTGGAGTTTATA
GCCACGCAGCAAAAAGAGCTTGAGGACAGCCTGGGACCGCTTGAGAAGGA
ATTCGTTAATCTCCCGAGGGTGGACATGGAACGCAGCCAAACCTACCTGA
TGGTGGAGAATCTGGACACACAACTGAAGCAGATGTCCGAGGATCTAAAG
GAGATAATAGACAACTTGAACGAGGCCAACAAGGGCCAGGACACCACTGA
TCCCATCATACAGATCGGAAAAATCCTTAATGCCCATATGAATTCGTTGC
AGTGGATCGAATCGCAGTCGACGAACATCAGCAAGAAGCTGGAAGACATT
GGCAAGATTCAAGACTCCCAGAAACGCGATATTTTCCGAGCTCCTTTCTA
AAAGCTTTCTAGACCAT

BS07307.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Nup62-RB 1185 CG6251-PB 1..1185 17..1201 5925 100 Plus
Nup62-RA 1185 CG6251-PA 1..1185 17..1201 5925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Nup62-RB 1345 CG6251-RB 97..1283 16..1202 5935 100 Plus
Nup62-RA 1452 CG6251-RA 204..1390 16..1202 5935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16344580..16345766 16..1202 5935 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:39:08 has no hits.

BS07307.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:44 Download gff for BS07307.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 1..1185 17..1201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:04 Download gff for BS07307.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 204..1390 16..1202 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:48 Download gff for BS07307.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 205..1387 17..1199 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:44 Download gff for BS07307.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 204..1390 16..1202 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:18 Download gff for BS07307.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 205..1387 17..1199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:18 Download gff for BS07307.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16344581..16345763 17..1199 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:48 Download gff for BS07307.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12232086..12233268 17..1199 100   Plus

BS07307.pep Sequence

Translation from 16 to 1200

> BS07307.pep
MVFQLPTTTAAPTGGATSSFSFGLSTGTPAAAPASGAATTAPATKTTFSF
GTPAPTAGIGGGDADNSKAQAPPAFGFGLGSGTASAPLTLGTQAAANPAS
TTSATATGTSAAPPAFGGFTAQPAASVVPTIATSAPNTAATTTGLLGGSG
LGAPKTTAAASTTLTAAPSAIASTQGAAPAPTLSTGGAFANLTTETKTTD
SSAVSTASQLSYHQLEEHINKWTLEFEEQEKVFTEQATQINAWDKLLISN
NGKIVELNDAVKKVKTDQQVLDQELEFIATQQKELEDSLGPLEKEFVNLP
RVDMERSQTYLMVENLDTQLKQMSEDLKEIIDNLNEANKGQDTTDPIIQI
GKILNAHMNSLQWIESQSTNISKKLEDIGKIQDSQKRDIFRAPF*

BS07307.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Nup62-PB 394 CG6251-PB 1..394 1..394 1978 100 Plus
Nup62-PA 394 CG6251-PA 1..394 1..394 1978 100 Plus
Nup153-PC 1883 CG4453-PC 1268..1494 3..210 196 32.5 Plus
Nup153-PA 1883 CG4453-PA 1268..1494 3..210 196 32.5 Plus
Nup153-PD 1929 CG4453-PD 1268..1494 3..210 196 32.5 Plus