Clone Sequence Records
BS07307.3prime Sequence
949 bp (867 high quality bases) assembled on 2006-01-06
> BS07307.3prime
ATGGTCTAGAAAGCTTTTAGAAAGGAGCTCGGAAAATATCGCGTTTCTGG
GAGTCTTGAATCTTGCCAATGTCTTCCAGCTTCTTGCTGATGTTCGTCGA
CTGCGATTCGATCCACTGCAACGAATTCATATGGGCATTAAGGATTTTTC
CGATCTGTATGATGGGATCAGTGGTGTCCTGGCCCTTGTTGGCCTCGTTC
AAGTTGTCTATTATCTCCTTTAGATCCTCGGACATCTGCTTCAGTTGTGT
GTCCAGATTCTCCACCATCAGGTAGGTTTGGCTGCGTTCCATGTCCACCC
TCGGGAGATTAACGAATTCCTTCTCAAGCGGTCCCAGGCTGTCCTCAAGC
TCTTTTTGCTGCGTGGCTATAAACTCCAGCTCCTGGTCCAGCACTTGCTG
ATCGGTTTTCACTTTTTTCACGGCATCGTTGAGCTCGACGATCTTCCCGT
TGTTGCTGATGAGCAGTTTGTCCCATGCGTTGATCTGAGTGGCCTGTTCG
GTGAATACCTTTTCCTGTTCCTCGAACTCGAGAGTCCACTTGTTGATATG
CTCCTCAAGTTGGTGGTAGGACAATTGGGATGCCGTGGAAACGGCCGATG
AGTCTGTGGTCTTGGTTTCGGTAGTGAGATTGGCAAAAGCACCACCAGTA
CTTAAAGTTGGGGCCGGTGCAGCTCCCTGCGTGGAGGCTATGGCCGACGG
AGCTGCAGTCAGAGTTGTGGACGCAGCGGCCGTGGTCTTGGGAGCTCCCA
ATCCAGACCCGCCCAGCAATCCAGTTGTGGTAGCTGCGGTGTTGGGTGCA
CTGGTTGCTATAGTTGGCACCACAGATGCCGCTGGTTGAGCCGTAAAGCC
TCCGAAGGCGGGAGGAGCAGCAGAGGTTCCAGTCGCGGTCGCAGAAGTGG
TGGACGCTGGATTTGCCGCGGCTTGAGTGCCCAGCGTGAGGGGAGCTGA
BS07307.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6251-PA | 1185 | Nup62-RA | 253..1185 | 949..17 | 4640 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup62-RB | 1345 | CG6251-RB | 350..1283 | 949..16 | 4655 | 99.9 | Minus |
Nup62-RA | 1452 | CG6251-RA | 457..1390 | 949..16 | 4655 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16344833..16345766 | 949..16 | 4655 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:58:12 has no hits.
BS07307.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:46 Download gff for
BS07307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-PA | 254..1185 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:26 Download gff for
BS07307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6251-PA | 254..1185 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:08:20 Download gff for
BS07307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-RA | 458..1390 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:32 Download gff for
BS07307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-RA | 458..1390 | 16..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:32 Download gff for
BS07307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16344834..16345766 | 16..948 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:08:20 Download gff for
BS07307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12232339..12233271 | 16..948 | 99 | | Minus |
BS07307.5prime Sequence
847 bp (806 high quality bases) assembled on 2006-01-06
> BS07307.5prime
GAAGTTATCAGTCGACATGGTATTCCAGTTGCCAACAACAACCGCCGCCC
CGACCGGAGGCGCAACATCGTCGTTTTCCTTCGGCCTCAGCACAGGAACA
CCAGCCGCAGCACCAGCTTCAGGAGCAGCAACCACGGCTCCCGCCACAAA
AACCACATTCTCTTTCGGAACACCGGCACCTACTGCTGGTATCGGTGGCG
GAGATGCAGACAACAGCAAGGCGCAGGCTCCACCAGCCTTTGGATTTGGC
CTGGGATCCGGGACTGCTTCAGCTCCCCTCACGCTGGGCACTCAAGCCGC
CGCAAATCCAGCGTCCACCACTTCTGCGACCGCGACTGGAACCTCTGCTG
CTCCTCCCGCCTTCGGAGGCTTTACGGCTCAACCAGCGGCATCTGTGGTG
CCAACTATAGCAACCAGTGCACCCAACACCGCAGCTACCACAACTGGATT
GCTGGGCGGGTCTGGATTGGGAGCTCCCAAGACCACGGCCGCTGCGTCCA
CAACTCTGACTGCAGCTCCGTCGGCCATAGCCTCCACGCAGGGAGCTGCA
CCGGCCCCAACTTTAAGTACTGGTGGTGCTTTTGCCAATCTCACTACCGA
AACCAAGACCACAGACTCATCGGCCGTTTCCACGGCATCCCAATTGTCCT
ACCACCAACTTGAGGAGCATATCAACAAGTGGACTCTCGAGTTCGAGGAA
CAGGAAAAGGTATTCACCGAACAGGCCACTCAGATCAACGCATGGGACAA
ACTGCTCATCAGCAACAACGGGAAGATCGTCGAGCTCAACGATGCCGTGA
AAAAGTGAAAACCGATCAGCAAGTGCTGGACCAGGAGCTGGAGTTTA
BS07307.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6251-PA | 1185 | Nup62-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
CG6251-PA | 1185 | Nup62-RA | 785..832 | 800..847 | 240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup62-RB | 1345 | CG6251-RB | 97..929 | 16..847 | 4140 | 99.9 | Plus |
Nup62-RA | 1452 | CG6251-RA | 204..1036 | 16..847 | 4140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16344580..16345412 | 16..847 | 4115 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:25:57 has no hits.
BS07307.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:47 Download gff for
BS07307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-PA | 1..831 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:28 Download gff for
BS07307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6251-PA | 1..831 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:04 Download gff for
BS07307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-RA | 204..1035 | 16..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:03 Download gff for
BS07307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-RA | 204..1035 | 16..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:03 Download gff for
BS07307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16344580..16345411 | 16..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:04 Download gff for
BS07307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12232085..12232916 | 16..846 | 99 | | Plus |
BS07307.complete Sequence
1217 bp (1217 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635811
> BS07307.complete
GAAGTTATCAGTCGACATGGTATTCCAGTTGCCAACAACAACCGCCGCCC
CGACCGGAGGCGCAACATCGTCGTTTTCCTTCGGCCTCAGCACAGGAACA
CCAGCCGCAGCACCAGCTTCAGGAGCAGCAACCACGGCTCCCGCCACAAA
AACCACATTCTCTTTCGGAACACCGGCACCTACTGCTGGTATCGGTGGCG
GAGATGCAGACAACAGCAAGGCGCAGGCTCCACCAGCCTTTGGATTTGGC
CTGGGATCCGGGACTGCTTCAGCTCCCCTCACGCTGGGCACTCAAGCCGC
CGCAAATCCAGCGTCCACCACTTCTGCGACCGCGACTGGAACCTCTGCTG
CTCCTCCCGCCTTCGGAGGCTTTACGGCTCAACCAGCGGCATCTGTGGTG
CCAACTATAGCAACCAGTGCACCCAACACCGCAGCTACCACAACTGGATT
GCTGGGCGGGTCTGGATTGGGAGCTCCCAAGACCACGGCCGCTGCGTCCA
CAACTCTGACTGCAGCTCCGTCGGCCATAGCCTCCACGCAGGGAGCTGCA
CCGGCCCCAACTTTAAGTACTGGTGGTGCTTTTGCCAATCTCACTACCGA
AACCAAGACCACAGACTCATCGGCCGTTTCCACGGCATCCCAATTGTCCT
ACCACCAACTTGAGGAGCATATCAACAAGTGGACTCTCGAGTTCGAGGAA
CAGGAAAAGGTATTCACCGAACAGGCCACTCAGATCAACGCATGGGACAA
ACTGCTCATCAGCAACAACGGGAAGATCGTCGAGCTCAACGATGCCGTGA
AAAAAGTGAAAACCGATCAGCAAGTGCTGGACCAGGAGCTGGAGTTTATA
GCCACGCAGCAAAAAGAGCTTGAGGACAGCCTGGGACCGCTTGAGAAGGA
ATTCGTTAATCTCCCGAGGGTGGACATGGAACGCAGCCAAACCTACCTGA
TGGTGGAGAATCTGGACACACAACTGAAGCAGATGTCCGAGGATCTAAAG
GAGATAATAGACAACTTGAACGAGGCCAACAAGGGCCAGGACACCACTGA
TCCCATCATACAGATCGGAAAAATCCTTAATGCCCATATGAATTCGTTGC
AGTGGATCGAATCGCAGTCGACGAACATCAGCAAGAAGCTGGAAGACATT
GGCAAGATTCAAGACTCCCAGAAACGCGATATTTTCCGAGCTCCTTTCTA
AAAGCTTTCTAGACCAT
BS07307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup62-RB | 1185 | CG6251-PB | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Nup62-RA | 1185 | CG6251-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup62-RB | 1345 | CG6251-RB | 97..1283 | 16..1202 | 5935 | 100 | Plus |
Nup62-RA | 1452 | CG6251-RA | 204..1390 | 16..1202 | 5935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16344580..16345766 | 16..1202 | 5935 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:39:08 has no hits.
BS07307.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:44 Download gff for
BS07307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-RA | 1..1185 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:04 Download gff for
BS07307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-RA | 204..1390 | 16..1202 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:48 Download gff for
BS07307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-RA | 205..1387 | 17..1199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:44 Download gff for
BS07307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-RA | 204..1390 | 16..1202 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:18 Download gff for
BS07307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup62-RA | 205..1387 | 17..1199 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:18 Download gff for
BS07307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16344581..16345763 | 17..1199 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:48 Download gff for
BS07307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12232086..12233268 | 17..1199 | 100 | | Plus |
BS07307.pep Sequence
Translation from 16 to 1200
> BS07307.pep
MVFQLPTTTAAPTGGATSSFSFGLSTGTPAAAPASGAATTAPATKTTFSF
GTPAPTAGIGGGDADNSKAQAPPAFGFGLGSGTASAPLTLGTQAAANPAS
TTSATATGTSAAPPAFGGFTAQPAASVVPTIATSAPNTAATTTGLLGGSG
LGAPKTTAAASTTLTAAPSAIASTQGAAPAPTLSTGGAFANLTTETKTTD
SSAVSTASQLSYHQLEEHINKWTLEFEEQEKVFTEQATQINAWDKLLISN
NGKIVELNDAVKKVKTDQQVLDQELEFIATQQKELEDSLGPLEKEFVNLP
RVDMERSQTYLMVENLDTQLKQMSEDLKEIIDNLNEANKGQDTTDPIIQI
GKILNAHMNSLQWIESQSTNISKKLEDIGKIQDSQKRDIFRAPF*
BS07307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup62-PB | 394 | CG6251-PB | 1..394 | 1..394 | 1978 | 100 | Plus |
Nup62-PA | 394 | CG6251-PA | 1..394 | 1..394 | 1978 | 100 | Plus |
Nup153-PC | 1883 | CG4453-PC | 1268..1494 | 3..210 | 196 | 32.5 | Plus |
Nup153-PA | 1883 | CG4453-PA | 1268..1494 | 3..210 | 196 | 32.5 | Plus |
Nup153-PD | 1929 | CG4453-PD | 1268..1494 | 3..210 | 196 | 32.5 | Plus |