Clone Sequence Records
BS07308.3prime Sequence
942 bp (839 high quality bases) assembled on 2006-01-06
> BS07308.3prime
ATGGTCTAGAAAGCTTTTAGAAGCTGTAGTTGAGATTGCCGCTTGAGAAG
CTCACATGAGAGACGTCCGGCGATTGCTGGTAGGTGGGGGATCCCAGCAC
GGAGGACATGGGAACGGCCATCCCATAGCTCTGGCGGGTGGTGGGCGCCA
ACTGGCTGGTGGCGAACTGATGGGCCACCGACTGCTGCTGGTCACGGAGC
ACGTCCTGCTGCTGCTGCTGCATGAAGCCCATGTGCTGTTGCGTGGAGTA
GAAGTCTCCACTTGCTCCCCCTCCCAGACTGTTGGAGCGCAAAGGCGCTG
ATCCGATCACTCCTCCCGGGATGACTCCAACTGGACCTCCTCTTACTGGA
CCTCCGGGCACAATGGATCCGGATGCAAGGCGCTCGGGCTGCAGGCCATT
GTTGCTGAACTGCGGCCGACGGTAGGCGAAGCGGCCAGCTGCGTTCTGTG
CTGCCACGCCCGCCGGAGCGCCTCCCACATCGGCGGGAGCAGCTATCTGG
GGGGTTTGGGGTTGAATCTGATGAGCCGGTGATGTTAGGCCGCCGGATAC
ATCGGGATAGTAGTGGTAGAGCTTCTGCAGCAGGTGCTGCTGCTGCTGCT
CGAACTCGGCTCGTTGGCGCTGATAATCGAGGAAGGCGGCGTGCATCTGG
TCCGCATAGCTGGGCATGTTGACCACGCCACCGCTAACGCCCACTCCTGG
TCCGGATGCAGCTGCTACCTGCGGCGATGTGGCGGCCAGGAGTTGCTGCT
GCTGCTGCGCCAGGAGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGT
TGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGCTGGAGCAGCGAGTT
GGGCGTGACCTTCAGCTTACCATCGGCCCCGGAATCCTGGCTGCGAGTAC
ACGGCAGGATACTGCTGTCCCGACGGCGAGAATCACCAAATT
BS07308.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-PB | 1158 | CG32548-RB | 296..1158 | 879..17 | 4315 | 100 | Minus |
CG32548-PC | 1065 | CG32548-RC | 203..1065 | 879..17 | 4315 | 100 | Minus |
CG32548-PB | 1158 | CG32548-RB | 242..298 | 934..878 | 285 | 100 | Minus |
CG32548-PC | 1065 | CG32548-RC | 149..205 | 934..878 | 285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-RC | 1382 | CG32548-RC | 313..1238 | 942..17 | 4585 | 99.8 | Minus |
CG32548-RB | 1475 | CG32548-RB | 406..1331 | 942..17 | 4585 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18435863..18436779 | 17..934 | 4540 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-08 15:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..7102 | 845..569 | 298 | 59.5 | Minus |
BS07308.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:48 Download gff for
BS07308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-PC | 140..1065 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:30 Download gff for
BS07308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-PC | 140..1065 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:03:51 Download gff for
BS07308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RB | 406..1331 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:42:48 Download gff for
BS07308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RB | 406..1331 | 17..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:42:48 Download gff for
BS07308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18435863..18436788 | 17..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:03:51 Download gff for
BS07308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18329896..18330821 | 17..942 | 99 | | Plus |
BS07308.5prime Sequence
886 bp (822 high quality bases) assembled on 2006-01-06
> BS07308.5prime
GAAGTTATCAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCA
GTCGATTGGCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCC
CAGCACTCAATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCC
CACGCAATTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGT
ACTCGCAGCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAAC
TCGCTGCTCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACA
GCAGCAACAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGC
AGCAACTCCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCA
GGAGTGGGCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCA
GATGCACGCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGC
AGCAGCAGCAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTA
TCCGGCGGCCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCA
GATAGCTGCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCAC
AGAACGCAGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAAT
GGCCTGCAGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCC
AGTAAGAGGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAG
CGCCTTTGCGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTAC
TCCACGCAACAGCACATGGGCTTCATGCAGCAGCAG
BS07308.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-PC | 1065 | CG32548-RC | 1..870 | 17..886 | 4350 | 100 | Plus |
CG32548-PB | 1158 | CG32548-RB | 220..963 | 143..886 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-RC | 1382 | CG32548-RC | 173..1043 | 16..886 | 4355 | 100 | Plus |
CG32548-RB | 1475 | CG32548-RB | 393..1136 | 143..886 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18436058..18436801 | 886..143 | 3720 | 100 | Minus |
X | 23542271 | X | 18437002..18437128 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 00:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..7102 | 253..529 | 298 | 59.5 | Plus |
BS07308.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:49 Download gff for
BS07308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-PC | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:31 Download gff for
BS07308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-PC | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:46 Download gff for
BS07308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 165..1043 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:33 Download gff for
BS07308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 165..1043 | 9..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:33 Download gff for
BS07308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18436058..18436801 | 143..886 | 100 | <- | Minus |
X | 18437002..18437136 | 9..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:46 Download gff for
BS07308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18330091..18330834 | 143..886 | 100 | <- | Minus |
arm_X | 18331035..18331169 | 9..142 | 97 | | Minus |
BS07308.complete Sequence
1097 bp (1097 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635812
> BS07308.complete
GAAGTTATCAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCA
GTCGATTGGCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCC
CAGCACTCAATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCC
CACGCAATTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGT
ACTCGCAGCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAAC
TCGCTGCTCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACA
GCAGCAACAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGC
AGCAACTCCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCA
GGAGTGGGCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCA
GATGCACGCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGC
AGCAGCAGCAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTA
TCCGGCGGCCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCA
GATAGCTGCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCAC
AGAACGCAGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAAT
GGCCTGCAGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCC
AGTAAGAGGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAG
CGCCTTTGCGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTAC
TCCACGCAACAGCACATGGGCTTCATGCAGCAGCAGCAGCAGGACGTGCT
CCGTGACCAGCAGCAGTCGGTGGCCCATCAGTTCGCCACCAGCCAGTTGG
CGCCCACCACCCGCCAGAGCTATGGGATGGCCGTTCCCATGTCCTCCGTG
CTGGGATCCCCCACCTACCAGCAATCGCCGGACGTCTCTCATGTGAGCTT
CTCAAGCGGCAATCTCAACTACAGCTTCTAAAAGCTTTCTAGACCAT
BS07308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-RC | 1065 | CG32548-PC | 1..1065 | 17..1081 | 5325 | 100 | Plus |
CG32548-RB | 1158 | CG32548-PB | 220..1158 | 143..1081 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-RC | 1382 | CG32548-RC | 173..1238 | 16..1081 | 5330 | 100 | Plus |
CG32548-RB | 1475 | CG32548-RB | 393..1331 | 143..1081 | 4695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18435863..18436801 | 1081..143 | 4695 | 100 | Minus |
X | 23542271 | X | 18437002..18437128 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:59:32 has no hits.
BS07308.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:27 Download gff for
BS07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 1..1065 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:42 Download gff for
BS07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 165..1238 | 9..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:05 Download gff for
BS07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 174..1236 | 17..1079 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:27 Download gff for
BS07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 165..1238 | 9..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:51 Download gff for
BS07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 174..1236 | 17..1079 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:51 Download gff for
BS07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18435865..18436801 | 143..1079 | 100 | <- | Minus |
X | 18437002..18437127 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:05 Download gff for
BS07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18329898..18330834 | 143..1079 | 100 | <- | Minus |
arm_X | 18331035..18331160 | 17..142 | 100 | | Minus |
BS07308.pep Sequence
Translation from 16 to 1080
> BS07308.pep
MRSSKVRGGNASRLADAEGQWGKGCLGSQHSIIKNHGRGLSSQTPTQFGG
FSPSGQQYPAVYSQPGFRADGKLKVTPNSLLQQQQQQQQQQQQQQQQQQQ
QQQQQLLAQQQQQLLAATSPQVAAASGPGVGVSGGVVNMPSYADQMHAAF
LDYQRQRAEFEQQQQHLLQKLYHYYPDVSGGLTSPAHQIQPQTPQIAAPA
DVGGAPAGVAAQNAAGRFAYRRPQFSNNGLQPERLASGSIVPGGPVRGGP
VGVIPGGVIGSAPLRSNSLGGGASGDFYSTQQHMGFMQQQQQDVLRDQQQ
SVAHQFATSQLAPTTRQSYGMAVPMSSVLGSPTYQQSPDVSHVSFSSGNL
NYSF*
BS07308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-PC | 354 | CG32548-PC | 1..354 | 1..354 | 1833 | 100 | Plus |
CG32548-PB | 385 | CG32548-PB | 74..385 | 43..354 | 1612 | 100 | Plus |
ptip-PA | 2294 | CG32133-PA | 1158..1367 | 80..302 | 171 | 32.9 | Plus |
ptip-PA | 2294 | CG32133-PA | 229..346 | 82..200 | 167 | 40.5 | Plus |
mam-PD | 1594 | CG8118-PD | 774..1047 | 56..300 | 167 | 29.6 | Plus |
mam-PB | 1594 | CG8118-PB | 774..1047 | 56..300 | 167 | 29.6 | Plus |
ptip-PA | 2294 | CG32133-PA | 846..988 | 52..195 | 165 | 37.7 | Plus |