Clone BS07308 Report

Search the DGRC for BS07308

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG32548-RC
Protein status:BS07308.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07308.3prime Sequence

942 bp (839 high quality bases) assembled on 2006-01-06

> BS07308.3prime
ATGGTCTAGAAAGCTTTTAGAAGCTGTAGTTGAGATTGCCGCTTGAGAAG
CTCACATGAGAGACGTCCGGCGATTGCTGGTAGGTGGGGGATCCCAGCAC
GGAGGACATGGGAACGGCCATCCCATAGCTCTGGCGGGTGGTGGGCGCCA
ACTGGCTGGTGGCGAACTGATGGGCCACCGACTGCTGCTGGTCACGGAGC
ACGTCCTGCTGCTGCTGCTGCATGAAGCCCATGTGCTGTTGCGTGGAGTA
GAAGTCTCCACTTGCTCCCCCTCCCAGACTGTTGGAGCGCAAAGGCGCTG
ATCCGATCACTCCTCCCGGGATGACTCCAACTGGACCTCCTCTTACTGGA
CCTCCGGGCACAATGGATCCGGATGCAAGGCGCTCGGGCTGCAGGCCATT
GTTGCTGAACTGCGGCCGACGGTAGGCGAAGCGGCCAGCTGCGTTCTGTG
CTGCCACGCCCGCCGGAGCGCCTCCCACATCGGCGGGAGCAGCTATCTGG
GGGGTTTGGGGTTGAATCTGATGAGCCGGTGATGTTAGGCCGCCGGATAC
ATCGGGATAGTAGTGGTAGAGCTTCTGCAGCAGGTGCTGCTGCTGCTGCT
CGAACTCGGCTCGTTGGCGCTGATAATCGAGGAAGGCGGCGTGCATCTGG
TCCGCATAGCTGGGCATGTTGACCACGCCACCGCTAACGCCCACTCCTGG
TCCGGATGCAGCTGCTACCTGCGGCGATGTGGCGGCCAGGAGTTGCTGCT
GCTGCTGCGCCAGGAGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGT
TGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGCTGGAGCAGCGAGTT
GGGCGTGACCTTCAGCTTACCATCGGCCCCGGAATCCTGGCTGCGAGTAC
ACGGCAGGATACTGCTGTCCCGACGGCGAGAATCACCAAATT

BS07308.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PB 1158 CG32548-RB 296..1158 879..17 4315 100 Minus
CG32548-PC 1065 CG32548-RC 203..1065 879..17 4315 100 Minus
CG32548-PB 1158 CG32548-RB 242..298 934..878 285 100 Minus
CG32548-PC 1065 CG32548-RC 149..205 934..878 285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RC 1382 CG32548-RC 313..1238 942..17 4585 99.8 Minus
CG32548-RB 1475 CG32548-RB 406..1331 942..17 4585 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18435863..18436779 17..934 4540 99.9 Plus
Blast to na_te.dros performed 2015-02-08 15:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..7102 845..569 298 59.5 Minus

BS07308.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:48 Download gff for BS07308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-PC 140..1065 17..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:30 Download gff for BS07308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-PC 140..1065 17..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:03:51 Download gff for BS07308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 406..1331 17..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:42:48 Download gff for BS07308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 406..1331 17..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:42:48 Download gff for BS07308.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18435863..18436788 17..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:03:51 Download gff for BS07308.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18329896..18330821 17..942 99   Plus

BS07308.5prime Sequence

886 bp (822 high quality bases) assembled on 2006-01-06

> BS07308.5prime
GAAGTTATCAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCA
GTCGATTGGCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCC
CAGCACTCAATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCC
CACGCAATTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGT
ACTCGCAGCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAAC
TCGCTGCTCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACA
GCAGCAACAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGC
AGCAACTCCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCA
GGAGTGGGCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCA
GATGCACGCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGC
AGCAGCAGCAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTA
TCCGGCGGCCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCA
GATAGCTGCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCAC
AGAACGCAGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAAT
GGCCTGCAGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCC
AGTAAGAGGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAG
CGCCTTTGCGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTAC
TCCACGCAACAGCACATGGGCTTCATGCAGCAGCAG

BS07308.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PC 1065 CG32548-RC 1..870 17..886 4350 100 Plus
CG32548-PB 1158 CG32548-RB 220..963 143..886 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RC 1382 CG32548-RC 173..1043 16..886 4355 100 Plus
CG32548-RB 1475 CG32548-RB 393..1136 143..886 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18436058..18436801 886..143 3720 100 Minus
X 23542271 X 18437002..18437128 142..16 635 100 Minus
Blast to na_te.dros performed 2015-02-12 00:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..7102 253..529 298 59.5 Plus

BS07308.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:49 Download gff for BS07308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-PC 1..870 17..886 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:31 Download gff for BS07308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-PC 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:46 Download gff for BS07308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 165..1043 9..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:33 Download gff for BS07308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 165..1043 9..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:33 Download gff for BS07308.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18436058..18436801 143..886 100 <- Minus
X 18437002..18437136 9..142 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:46 Download gff for BS07308.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18330091..18330834 143..886 100 <- Minus
arm_X 18331035..18331169 9..142 97   Minus

BS07308.complete Sequence

1097 bp (1097 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635812

> BS07308.complete
GAAGTTATCAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCA
GTCGATTGGCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCC
CAGCACTCAATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCC
CACGCAATTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGT
ACTCGCAGCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAAC
TCGCTGCTCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACA
GCAGCAACAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGC
AGCAACTCCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCA
GGAGTGGGCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCA
GATGCACGCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGC
AGCAGCAGCAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTA
TCCGGCGGCCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCA
GATAGCTGCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCAC
AGAACGCAGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAAT
GGCCTGCAGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCC
AGTAAGAGGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAG
CGCCTTTGCGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTAC
TCCACGCAACAGCACATGGGCTTCATGCAGCAGCAGCAGCAGGACGTGCT
CCGTGACCAGCAGCAGTCGGTGGCCCATCAGTTCGCCACCAGCCAGTTGG
CGCCCACCACCCGCCAGAGCTATGGGATGGCCGTTCCCATGTCCTCCGTG
CTGGGATCCCCCACCTACCAGCAATCGCCGGACGTCTCTCATGTGAGCTT
CTCAAGCGGCAATCTCAACTACAGCTTCTAAAAGCTTTCTAGACCAT

BS07308.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RC 1065 CG32548-PC 1..1065 17..1081 5325 100 Plus
CG32548-RB 1158 CG32548-PB 220..1158 143..1081 4695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RC 1382 CG32548-RC 173..1238 16..1081 5330 100 Plus
CG32548-RB 1475 CG32548-RB 393..1331 143..1081 4695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18435863..18436801 1081..143 4695 100 Minus
X 23542271 X 18437002..18437128 142..16 635 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:59:32 has no hits.

BS07308.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:27 Download gff for BS07308.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1065 17..1081 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:42 Download gff for BS07308.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 165..1238 9..1081 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:05 Download gff for BS07308.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 174..1236 17..1079 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:27 Download gff for BS07308.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 165..1238 9..1081 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:51 Download gff for BS07308.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 174..1236 17..1079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:51 Download gff for BS07308.complete
Subject Subject Range Query Range Percent Splice Strand
X 18435865..18436801 143..1079 100 <- Minus
X 18437002..18437127 17..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:05 Download gff for BS07308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18329898..18330834 143..1079 100 <- Minus
arm_X 18331035..18331160 17..142 100   Minus

BS07308.pep Sequence

Translation from 16 to 1080

> BS07308.pep
MRSSKVRGGNASRLADAEGQWGKGCLGSQHSIIKNHGRGLSSQTPTQFGG
FSPSGQQYPAVYSQPGFRADGKLKVTPNSLLQQQQQQQQQQQQQQQQQQQ
QQQQQLLAQQQQQLLAATSPQVAAASGPGVGVSGGVVNMPSYADQMHAAF
LDYQRQRAEFEQQQQHLLQKLYHYYPDVSGGLTSPAHQIQPQTPQIAAPA
DVGGAPAGVAAQNAAGRFAYRRPQFSNNGLQPERLASGSIVPGGPVRGGP
VGVIPGGVIGSAPLRSNSLGGGASGDFYSTQQHMGFMQQQQQDVLRDQQQ
SVAHQFATSQLAPTTRQSYGMAVPMSSVLGSPTYQQSPDVSHVSFSSGNL
NYSF*

BS07308.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PC 354 CG32548-PC 1..354 1..354 1833 100 Plus
CG32548-PB 385 CG32548-PB 74..385 43..354 1612 100 Plus
ptip-PA 2294 CG32133-PA 1158..1367 80..302 171 32.9 Plus
ptip-PA 2294 CG32133-PA 229..346 82..200 167 40.5 Plus
mam-PD 1594 CG8118-PD 774..1047 56..300 167 29.6 Plus
mam-PB 1594 CG8118-PB 774..1047 56..300 167 29.6 Plus
ptip-PA 2294 CG32133-PA 846..988 52..195 165 37.7 Plus