Clone BS07309 Report

Search the DGRC for BS07309

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptVha36-1-RA
Protein status:BS07309.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07309.3prime Sequence

771 bp (770 high quality bases) assembled on 2006-01-06

> BS07309.3prime
ATGGTCTAGAAAGCTTTTAGAACAGCACGTCGTCATCGCCCTCATCCAGG
ATATTGGCCTGCTGGCGCACATCGATGCCCTGCTGCAGCAACTCCGCCTT
CTTGGCGTCGGCCTTGATGCGTGCCTCGCGCTTCTTGTCCTGGATCTTCT
TCAGTCGGTAGAACTCCTCACGCTCGAGCTCGTCCAGCTCCGAGATGATG
TAGGCCAAAGTCCTATCGATTCGGGGGATGATCACATGCTCAATGGCGTT
CACACGACGGTTGGTGATCTTGATCACCTCGTCCAGGGTGACGAATGAGG
TCTGCAGCGAGGCCAGCTCCACGAGCAGTTTAACGGCGCTTTGGTAGTTC
TTCTTCAGCTTGGCCAGCTGCTGACCACCACGGGCTAGACCGGCCAGTTC
GTAGGTGTCGGATCCGTCCTGGTAGGACTCGAAAACGGGCAGAGTGACAC
CAGCCACGTTGTCCTTCTTGGTGCGGATCTTGATCTGGGCCTTGGTCACG
TTTTGCAGCACCACTTGGTTGATGTCGCCAGACGTGAATTTGGCCTCCGC
CAGCGAGAAGGCTGCCTCTTTCATAACATCACCCATCAGGGTCTTGGTCT
CGATGATCTTGCCCAGAATCAAACGGAATCGCATCTGCAGGGCATCCGCC
TTCTTCTTGAGCAGACCGTGACCTTTCTGGGCTCCAGCCAGACGGGCCTT
CATCAACATCTGGGCACCACGGGACGGGAAAATCGGTAGCCTATCTTTTC
CGGACATGTCGACTGATAACT

BS07309.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8186-PA 741 Vha36-RA 1..741 757..17 3705 100 Minus
CG8310-PA 750 CG8310-RA 247..305 511..453 270 98.3 Minus
CG8310-PA 750 CG8310-RA 91..203 667..555 265 89.3 Minus
CG8310-PA 750 CG8310-RA 376..425 382..333 200 96 Minus
CG8310-PA 750 CG8310-RA 583..635 175..123 190 94.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
Vha36-1-RA 1064 CG8186-RA 103..843 757..17 3705 100 Minus
Vha36-3-RC 1294 CG8310-RC 374..986 730..118 1430 82.2 Minus
Vha36-3-RB 1138 CG8310-RB 218..830 730..118 1430 82.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15541537..15542277 757..17 3705 100 Minus
X 23542271 X 2579579..2579942 237..600 860 82.4 Plus
X 23542271 X 2579996..2580112 599..715 285 82.9 Plus
X 23542271 X 2579399..2579516 118..235 275 82.2 Plus
Blast to na_te.dros performed on 2015-02-02 19:15:14 has no hits.

BS07309.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:50 Download gff for BS07309.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-PA 1..741 17..757 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:32 Download gff for BS07309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8186-PA 1..741 17..757 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:01:03 Download gff for BS07309.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 96..843 17..765 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:07:26 Download gff for BS07309.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 96..843 17..765 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:07:26 Download gff for BS07309.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15541530..15542277 17..765 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:01:03 Download gff for BS07309.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11429035..11429782 17..765 99   Minus

BS07309.5prime Sequence

771 bp (770 high quality bases) assembled on 2006-01-06

> BS07309.5prime
GAAGTTATCAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGT
CCCGTGGTGCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAA
GGTCACGGTCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCG
TTTGATTCTGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTA
TGAAAGAGGCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGAC
ATCAACCAAGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCG
CACCAAGAAGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCT
ACCAGGACGGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGT
CAGCAGCTGGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCT
CGTGGAGCTGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGA
TCAAGATCACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCC
CGAATCGATAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGA
GCGTGAGGAGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGG
CACGCATCAAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGGCATC
GATGTGCGCCAGCAGGCCAATATCCTGGATGAGGGCGATGACGACGTGCT
GTTCTAAAAGCTTTCTAGACC

BS07309.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8186-PA 741 Vha36-RA 1..741 17..757 3705 100 Plus
CG8310-PA 750 CG8310-RA 247..305 263..321 270 98.3 Plus
CG8310-PA 750 CG8310-RA 91..203 107..219 265 89.3 Plus
CG8310-PA 750 CG8310-RA 376..425 392..441 200 96 Plus
CG8310-PA 750 CG8310-RA 583..635 599..651 190 94.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Vha36-1-RA 1064 CG8186-RA 103..843 17..757 3705 100 Plus
Vha36-3-RC 1294 CG8310-RC 374..986 44..656 1430 82.2 Plus
Vha36-3-RB 1138 CG8310-RB 218..830 44..656 1430 82.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15541537..15542277 17..757 3705 100 Plus
X 23542271 X 2579579..2579942 537..174 860 82.4 Minus
X 23542271 X 2579996..2580112 175..59 285 82.9 Minus
X 23542271 X 2579399..2579516 656..539 275 82.2 Minus
Blast to na_te.dros performed on 2015-02-10 04:22:33 has no hits.

BS07309.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:51 Download gff for BS07309.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:34 Download gff for BS07309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8186-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:48:08 Download gff for BS07309.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 96..843 9..757 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:23:15 Download gff for BS07309.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 96..843 9..757 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:23:15 Download gff for BS07309.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15541530..15542277 9..757 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:48:08 Download gff for BS07309.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11429035..11429782 9..757 99   Plus

BS07309.complete Sequence

773 bp (773 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635813

> BS07309.complete
GAAGTTATCAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGT
CCCGTGGTGCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAA
GGTCACGGTCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCG
TTTGATTCTGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTA
TGAAAGAGGCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGAC
ATCAACCAAGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCG
CACCAAGAAGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCT
ACCAGGACGGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGT
CAGCAGCTGGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCT
CGTGGAGCTGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGA
TCAAGATCACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCC
CGAATCGATAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGA
GCGTGAGGAGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGG
CACGCATCAAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGGCATC
GATGTGCGCCAGCAGGCCAATATCCTGGATGAGGGCGATGACGACGTGCT
GTTCTAAAAGCTTTCTAGACCAT

BS07309.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Vha36-1-RA 741 CG8186-PA 1..741 17..757 3705 100 Plus
Vha36-3-RC 750 CG8310-PC 28..640 44..656 1430 82.2 Plus
Vha36-3-RB 750 CG8310-PB 28..640 44..656 1430 82.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Vha36-1-RA 1064 CG8186-RA 103..843 17..757 3705 100 Plus
Vha36-3-RC 1294 CG8310-RC 374..986 44..656 1430 82.2 Plus
Vha36-3-RB 1138 CG8310-RB 218..830 44..656 1430 82.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15541537..15542277 17..757 3705 100 Plus
X 23542271 X 2579579..2579942 537..174 860 82.4 Minus
X 23542271 X 2579996..2580112 175..59 285 82.9 Minus
X 23542271 X 2579399..2579516 656..539 275 82.2 Minus
Blast to na_te.dros performed on 2014-11-27 08:03:19 has no hits.

BS07309.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:28 Download gff for BS07309.complete
Subject Subject Range Query Range Percent Splice Strand
Vha36-RA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:44 Download gff for BS07309.complete
Subject Subject Range Query Range Percent Splice Strand
Vha36-RA 114..861 9..757 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:09 Download gff for BS07309.complete
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 103..841 17..755 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:28 Download gff for BS07309.complete
Subject Subject Range Query Range Percent Splice Strand
Vha36-RA 114..861 9..757 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:05 Download gff for BS07309.complete
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 103..841 17..755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:05 Download gff for BS07309.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15541537..15542275 17..755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:09 Download gff for BS07309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11429042..11429780 17..755 100   Plus

BS07309.pep Sequence

Translation from 16 to 756

> BS07309.pep
MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGK
IIETKTLMGDVMKEAAFSLAEAKFTSGDINQVVLQNVTKAQIKIRTKKDN
VAGVTLPVFESYQDGSDTYELAGLARGGQQLAKLKKNYQSAVKLLVELAS
LQTSFVTLDEVIKITNRRVNAIEHVIIPRIDRTLAYIISELDELEREEFY
RLKKIQDKKREARIKADAKKAELLQQGIDVRQQANILDEGDDDVLF*

BS07309.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Vha36-1-PA 246 CG8186-PA 1..246 1..246 1204 100 Plus
Vha36-3-PC 249 CG8310-PC 1..249 1..246 1015 83.9 Plus
Vha36-3-PB 249 CG8310-PB 1..249 1..246 1015 83.9 Plus
Vha36-2-PA 373 CG13167-PA 1..214 1..214 388 40.5 Plus