Clone Sequence Records
BS07309.3prime Sequence
771 bp (770 high quality bases) assembled on 2006-01-06
> BS07309.3prime
ATGGTCTAGAAAGCTTTTAGAACAGCACGTCGTCATCGCCCTCATCCAGG
ATATTGGCCTGCTGGCGCACATCGATGCCCTGCTGCAGCAACTCCGCCTT
CTTGGCGTCGGCCTTGATGCGTGCCTCGCGCTTCTTGTCCTGGATCTTCT
TCAGTCGGTAGAACTCCTCACGCTCGAGCTCGTCCAGCTCCGAGATGATG
TAGGCCAAAGTCCTATCGATTCGGGGGATGATCACATGCTCAATGGCGTT
CACACGACGGTTGGTGATCTTGATCACCTCGTCCAGGGTGACGAATGAGG
TCTGCAGCGAGGCCAGCTCCACGAGCAGTTTAACGGCGCTTTGGTAGTTC
TTCTTCAGCTTGGCCAGCTGCTGACCACCACGGGCTAGACCGGCCAGTTC
GTAGGTGTCGGATCCGTCCTGGTAGGACTCGAAAACGGGCAGAGTGACAC
CAGCCACGTTGTCCTTCTTGGTGCGGATCTTGATCTGGGCCTTGGTCACG
TTTTGCAGCACCACTTGGTTGATGTCGCCAGACGTGAATTTGGCCTCCGC
CAGCGAGAAGGCTGCCTCTTTCATAACATCACCCATCAGGGTCTTGGTCT
CGATGATCTTGCCCAGAATCAAACGGAATCGCATCTGCAGGGCATCCGCC
TTCTTCTTGAGCAGACCGTGACCTTTCTGGGCTCCAGCCAGACGGGCCTT
CATCAACATCTGGGCACCACGGGACGGGAAAATCGGTAGCCTATCTTTTC
CGGACATGTCGACTGATAACT
BS07309.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8186-PA | 741 | Vha36-RA | 1..741 | 757..17 | 3705 | 100 | Minus |
CG8310-PA | 750 | CG8310-RA | 247..305 | 511..453 | 270 | 98.3 | Minus |
CG8310-PA | 750 | CG8310-RA | 91..203 | 667..555 | 265 | 89.3 | Minus |
CG8310-PA | 750 | CG8310-RA | 376..425 | 382..333 | 200 | 96 | Minus |
CG8310-PA | 750 | CG8310-RA | 583..635 | 175..123 | 190 | 94.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha36-1-RA | 1064 | CG8186-RA | 103..843 | 757..17 | 3705 | 100 | Minus |
Vha36-3-RC | 1294 | CG8310-RC | 374..986 | 730..118 | 1430 | 82.2 | Minus |
Vha36-3-RB | 1138 | CG8310-RB | 218..830 | 730..118 | 1430 | 82.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15541537..15542277 | 757..17 | 3705 | 100 | Minus |
X | 23542271 | X | 2579579..2579942 | 237..600 | 860 | 82.4 | Plus |
X | 23542271 | X | 2579996..2580112 | 599..715 | 285 | 82.9 | Plus |
X | 23542271 | X | 2579399..2579516 | 118..235 | 275 | 82.2 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:15:14 has no hits.
BS07309.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:50 Download gff for
BS07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-PA | 1..741 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:32 Download gff for
BS07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8186-PA | 1..741 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:01:03 Download gff for
BS07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 96..843 | 17..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:07:26 Download gff for
BS07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 96..843 | 17..765 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:07:26 Download gff for
BS07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15541530..15542277 | 17..765 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:01:03 Download gff for
BS07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11429035..11429782 | 17..765 | 99 | | Minus |
BS07309.5prime Sequence
771 bp (770 high quality bases) assembled on 2006-01-06
> BS07309.5prime
GAAGTTATCAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGT
CCCGTGGTGCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAA
GGTCACGGTCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCG
TTTGATTCTGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTA
TGAAAGAGGCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGAC
ATCAACCAAGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCG
CACCAAGAAGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCT
ACCAGGACGGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGT
CAGCAGCTGGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCT
CGTGGAGCTGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGA
TCAAGATCACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCC
CGAATCGATAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGA
GCGTGAGGAGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGG
CACGCATCAAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGGCATC
GATGTGCGCCAGCAGGCCAATATCCTGGATGAGGGCGATGACGACGTGCT
GTTCTAAAAGCTTTCTAGACC
BS07309.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8186-PA | 741 | Vha36-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
CG8310-PA | 750 | CG8310-RA | 247..305 | 263..321 | 270 | 98.3 | Plus |
CG8310-PA | 750 | CG8310-RA | 91..203 | 107..219 | 265 | 89.3 | Plus |
CG8310-PA | 750 | CG8310-RA | 376..425 | 392..441 | 200 | 96 | Plus |
CG8310-PA | 750 | CG8310-RA | 583..635 | 599..651 | 190 | 94.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha36-1-RA | 1064 | CG8186-RA | 103..843 | 17..757 | 3705 | 100 | Plus |
Vha36-3-RC | 1294 | CG8310-RC | 374..986 | 44..656 | 1430 | 82.2 | Plus |
Vha36-3-RB | 1138 | CG8310-RB | 218..830 | 44..656 | 1430 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15541537..15542277 | 17..757 | 3705 | 100 | Plus |
X | 23542271 | X | 2579579..2579942 | 537..174 | 860 | 82.4 | Minus |
X | 23542271 | X | 2579996..2580112 | 175..59 | 285 | 82.9 | Minus |
X | 23542271 | X | 2579399..2579516 | 656..539 | 275 | 82.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:22:33 has no hits.
BS07309.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:08:51 Download gff for
BS07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:57:34 Download gff for
BS07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8186-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:48:08 Download gff for
BS07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 96..843 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:23:15 Download gff for
BS07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 96..843 | 9..757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:23:15 Download gff for
BS07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15541530..15542277 | 9..757 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:48:08 Download gff for
BS07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11429035..11429782 | 9..757 | 99 | | Plus |
BS07309.complete Sequence
773 bp (773 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635813
> BS07309.complete
GAAGTTATCAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGT
CCCGTGGTGCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAA
GGTCACGGTCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCG
TTTGATTCTGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTA
TGAAAGAGGCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGAC
ATCAACCAAGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCG
CACCAAGAAGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCT
ACCAGGACGGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGT
CAGCAGCTGGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCT
CGTGGAGCTGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGA
TCAAGATCACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCC
CGAATCGATAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGA
GCGTGAGGAGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGG
CACGCATCAAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGGCATC
GATGTGCGCCAGCAGGCCAATATCCTGGATGAGGGCGATGACGACGTGCT
GTTCTAAAAGCTTTCTAGACCAT
BS07309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha36-1-RA | 741 | CG8186-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
Vha36-3-RC | 750 | CG8310-PC | 28..640 | 44..656 | 1430 | 82.2 | Plus |
Vha36-3-RB | 750 | CG8310-PB | 28..640 | 44..656 | 1430 | 82.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha36-1-RA | 1064 | CG8186-RA | 103..843 | 17..757 | 3705 | 100 | Plus |
Vha36-3-RC | 1294 | CG8310-RC | 374..986 | 44..656 | 1430 | 82.2 | Plus |
Vha36-3-RB | 1138 | CG8310-RB | 218..830 | 44..656 | 1430 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15541537..15542277 | 17..757 | 3705 | 100 | Plus |
X | 23542271 | X | 2579579..2579942 | 537..174 | 860 | 82.4 | Minus |
X | 23542271 | X | 2579996..2580112 | 175..59 | 285 | 82.9 | Minus |
X | 23542271 | X | 2579399..2579516 | 656..539 | 275 | 82.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:03:19 has no hits.
BS07309.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:28 Download gff for
BS07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-RA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:44 Download gff for
BS07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-RA | 114..861 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:09 Download gff for
BS07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 103..841 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:28 Download gff for
BS07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-RA | 114..861 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:05 Download gff for
BS07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 103..841 | 17..755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:05 Download gff for
BS07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15541537..15542275 | 17..755 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:09 Download gff for
BS07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11429042..11429780 | 17..755 | 100 | | Plus |
BS07309.pep Sequence
Translation from 16 to 756
> BS07309.pep
MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGK
IIETKTLMGDVMKEAAFSLAEAKFTSGDINQVVLQNVTKAQIKIRTKKDN
VAGVTLPVFESYQDGSDTYELAGLARGGQQLAKLKKNYQSAVKLLVELAS
LQTSFVTLDEVIKITNRRVNAIEHVIIPRIDRTLAYIISELDELEREEFY
RLKKIQDKKREARIKADAKKAELLQQGIDVRQQANILDEGDDDVLF*
BS07309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha36-1-PA | 246 | CG8186-PA | 1..246 | 1..246 | 1204 | 100 | Plus |
Vha36-3-PC | 249 | CG8310-PC | 1..249 | 1..246 | 1015 | 83.9 | Plus |
Vha36-3-PB | 249 | CG8310-PB | 1..249 | 1..246 | 1015 | 83.9 | Plus |
Vha36-2-PA | 373 | CG13167-PA | 1..214 | 1..214 | 388 | 40.5 | Plus |