Clone Sequence Records
BS07320.3prime Sequence
930 bp (842 high quality bases) assembled on 2006-01-06
> BS07320.3prime
ATGGTCTAGAAAGCTTTTACTTCCAATTGGCTTTGATGAAGTTAATTAGA
CCGTTCGTGGAACTGTCGTGCGTGGAGACCTCGTTGCAGTGATCCAGCTC
CGGCTCGATGGCCTTGGCCAGCTGCTTGCCCAGCTCCACACCCCATTGGT
CGAACGAGTTGATGTCCCAAATGATGCCCTGAACGAAGATCTTGTGCTCG
TACAGCGCAATCAACGCGCCTAGGGTGAAAGGTGAAACCTTCTTCACCAC
AATCGAGTTTGTGGGCCGGTTGCCGACGAACACCTTGTGGGGCAACAAGT
TATCCAGCTCGTTGCCGCACAGGCCAGCCTTGGACAGCTCGGTCCTGGCC
TCGTCGACCGTCTTTCCGGCCATTAAAGCCTCCGTCTGGGCAAGGAAATT
CGATAGCAGAATCTTGTGGTGCTTGCCGCCGGCAATGGGATTGTGTGTCT
GGGCGGGAGCGATGAAATCGCAGGGGATCAGGCGGGTGCCCTGGTGGATG
AGCTGGTAGAAGGCGTGCTGGCCATTGGTGCCAGGCTCGCCCCACACGAT
CGGACCAGTGCTGTACTTGACGGGTTTGCCCGACTTGCTGACGAACTTGC
CGTTGCTCTCCATATCGCCCTGCTGGAAGTAGGCGGCGAACCGGTGCAAG
TACTGATCGTAGGGAAGGAGGGCATGTGTTTCCGCCTTGAAGAAGTTGGA
GTACCAAACGCCTAGCAACGCCAGGATAACAGGAGCATTCTTCTCGAATG
GTGTCGTCTTGAAATGGTTGTCCATGAAGTGAGCTCCATCCAGCAGTTGC
TCAAAGTTCTCAAAGCCAATGGACAGACAGATTGACAGTCCAATGGCCGA
CCACAGGGAGTAGCGACCGCCCACCCAATCCCAAAACCGAACATGTTGGT
GCTGTCAATGGCGAATTCNGTGACCTTTTT
BS07320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8251-PA | 1677 | Pgi-RA | 808..1677 | 886..17 | 4350 | 100 | Minus |
| CG8251-PB | 1677 | Pgi-RB | 808..1677 | 886..17 | 4350 | 100 | Minus |
| CG8251-PC | 1677 | Pgi-RC | 808..1677 | 886..17 | 4350 | 100 | Minus |
| CG8251-PA | 1677 | Pgi-RA | 764..810 | 929..883 | 191 | 95.7 | Minus |
| CG8251-PB | 1677 | Pgi-RB | 764..810 | 929..883 | 191 | 95.7 | Minus |
| CG8251-PC | 1677 | Pgi-RC | 764..810 | 929..883 | 191 | 95.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-RC | 2277 | CG8251-RC | 1084..1997 | 929..17 | 4519 | 99.7 | Minus |
| Pgi-RB | 2321 | CG8251-RB | 1128..2041 | 929..17 | 4519 | 99.7 | Minus |
| Pgi-RA | 2460 | CG8251-RA | 1267..2180 | 929..17 | 4519 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8911426..8911954 | 208..736 | 2645 | 100 | Plus |
| 2R | 25286936 | 2R | 8911180..8911371 | 17..208 | 960 | 100 | Plus |
| 2R | 25286936 | 2R | 8912016..8912210 | 736..929 | 899 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:11:46 has no hits.
BS07320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:09 Download gff for
BS07320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-PC | 763..1677 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:00 Download gff for
BS07320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8251-PC | 763..1677 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:25 Download gff for
BS07320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 1266..2180 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:17 Download gff for
BS07320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 1266..2180 | 17..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:17 Download gff for
BS07320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8911180..8911370 | 17..207 | 100 | <- | Plus |
| 2R | 8911426..8911954 | 208..736 | 100 | <- | Plus |
| 2R | 8912017..8912210 | 737..930 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:25 Download gff for
BS07320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4798685..4798875 | 17..207 | 100 | <- | Plus |
| arm_2R | 4798931..4799459 | 208..736 | 100 | <- | Plus |
| arm_2R | 4799522..4799715 | 737..930 | 97 | | Plus |
BS07320.5prime Sequence
873 bp (818 high quality bases) assembled on 2006-01-06
> BS07320.5prime
GAAGTTATCAGTCGACATGGCCGGCCCACTTCCTCCGCTCAACCAGGAGG
CAGCGTTCCAGAAGCTGCAGGAGTACTACGACTCCAAGGGCAAGGACCTG
AACATCAAGGACCTGTTCGTGAAGGATTCCAAGAGATTCTCAAAATACAG
CCTGCGCCTGCACACCCAGAACGATGGCGAGATACTGCTGGACTACTCGA
AGAACCGTATCAATGACGAGGTCTGGGATCTGCTCCTCACCCTGGCCAAG
GTGCGCCGCGTTAACGCCGCGCGGGACGCCATGTTCTCCGGCCAGCACAT
TAACATCACGGAGAACCGCGCCGTCCTCCACACGGCCCTGCGCAACCGCG
GCACGGATCCCGTCCTGGTGGACGACAAGGACGTGATGCCCGATGTGCGC
GCCGAACTGGCCCACATGAAGGAGTTCACCAACATGGTCATCTCCGGCGT
GTGGCGCGGCTGCACCGGCAAACAGATCACCGACGTGGTCAACATCGGCA
TCGGTGGCTCCGATCTGGGCCCGCTGATGGTCACCGAAGCGCTGAAGCCC
TACGGCAAGGGCCTTCACTCCCACTTTGTGTCGAACATCGATGGCACTCA
TCTGGCCGAGGTCCTCAAGAAGGTCAACTACGAGACCACCCTCTTCATTG
TCGCCTCAAAAACTTTCACCACCCAGGAGACCATTACGAACGCCACCTCC
GCCAAGACCTGGCTCCTGGAGCATTCCAAGGAGCCTGAGTCCGTGGCCAA
GCATTTTGTGGCCCTGTCGACCAACAAGGAAAAGGTCACCGAATTCGGCA
TTGACAGCACCAACATGTTCGGTTTTTGGGATTGGGTGGGCGGTCGCTAC
TCCCTGTGGTCGGCCATTGGACT
BS07320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8251-PA | 1677 | Pgi-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
| CG8251-PB | 1677 | Pgi-RB | 1..857 | 17..873 | 4285 | 100 | Plus |
| CG8251-PC | 1677 | Pgi-RC | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-RC | 2277 | CG8251-RC | 321..1177 | 17..873 | 4285 | 100 | Plus |
| Pgi-RB | 2321 | CG8251-RB | 365..1221 | 17..873 | 4285 | 100 | Plus |
| Pgi-RA | 2460 | CG8251-RA | 504..1360 | 17..873 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8912605..8913190 | 733..148 | 2930 | 100 | Minus |
| 2R | 25286936 | 2R | 8912117..8912258 | 873..732 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 8913433..8913566 | 150..17 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:20:55 has no hits.
BS07320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:10 Download gff for
BS07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-PC | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:02 Download gff for
BS07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8251-PC | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:31 Download gff for
BS07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 498..1360 | 10..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:06 Download gff for
BS07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 498..1360 | 10..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:06 Download gff for
BS07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8912117..8912256 | 734..873 | 100 | <- | Minus |
| 2R | 8912605..8913187 | 151..733 | 100 | <- | Minus |
| 2R | 8913433..8913572 | 10..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:31 Download gff for
BS07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4799622..4799761 | 734..873 | 100 | <- | Minus |
| arm_2R | 4800110..4800692 | 151..733 | 100 | <- | Minus |
| arm_2R | 4800938..4801077 | 10..150 | 97 | | Minus |
BS07320.complete Sequence
1709 bp assembled on 2007-10-25
GenBank Submission: FJ635815
> BS07320.complete
GAAGTTATCAGTCGACATGGCCGGCCCACTTCCTCCGCTCAACCAGGAGG
CAGCGTTCCAGAAGCTGCAGGAGTACTACGACTCCAAGGGCAAGGACCTG
AACATCAAGGACCTGTTCGTGAAGGATTCCAAGAGATTCTCAAAATACAG
CCTGCGCCTGCACACCCAGAACGATGGCGAGATACTGCTGGACTACTCGA
AGAACCGTATCAATGACGAGGTCTGGGATCTGCTCCTCACCCTGGCCAAG
GTGCGCCGCGTTAACGCCGCGCGGGACGCCATGTTCTCCGGCCAGCACAT
TAACATCACGGAGAACCGCGCCGTCCTCCACACGGCCCTGCGCAACCGCG
GCACGGATCCCGTCCTGGTGGACGACAAGGACGTGATGCCCGATGTGCGC
GCCGAACTGGCCCACATGAAGGAGTTCACCAACATGGTCATCTCCGGCGT
GTGGCGCGGCTGCACCGGCAAACAGATCACCGACGTGGTCAACATCGGCA
TCGGTGGCTCCGATCTGGGCCCGCTGATGGTCACCGAAGCGCTGAAGCCC
TACGGCAAGGGCCTTCACTCCCACTTTGTGTCGAACATCGATGGCACTCA
TCTGGCCGAGGTCCTCAAGAAGGTCAACTACGAGACCACCCTCTTCATTG
TCGCCTCAAAAACTTTCACCACCCAGGAGACCATTACGAACGCCACCTCC
GCCAAGACCTGGCTCCTGGAGCATTCCAAGGAGCCTGAGTCCGTGGCCAA
GCATTTTGTGGCCCTGTCGACCAACAAGGAAAAGGTCACCGAATTCGGCA
TTGACAGCACCAACATGTTCGGTTTTTGGGATTGGGTGGGCGGTCGCTAC
TCCCTGTGGTCGGCCATTGGACTGTCAATCTGTCTGTCCATTGGCTTTGA
GAACTTTGAGCAACTGCTGGATGGAGCTCACTTCATGGACAACCATTTCA
AGACGACACCATTCGAGAAGAATGCTCCTGTTATCCTGGCGTTGCTAGGC
GTTTGGTACTCCAACTTCTTCAAGGCGGAAACACATGCCCTCCTTCCCTA
CGATCAGTACTTGCACCGGTTCGCCGCCTACTTCCAGCAGGGCGATATGG
AGAGCAACGGCAAGTTCGTCAGCAAGTCGGGCAAACCCGTCAAGTACAGC
ACTGGTCCGATCGTGTGGGGCGAGCCTGGCACCAATGGCCAGCACGCCTT
CTACCAGCTCATCCACCAGGGCACCCGCCTGATCCCCTGCGATTTCATCG
CTCCCGCCCAGACACACAATCCCATTGCCGGCGGCAAGCACCACAAGATT
CTGCTATCGAATTTCCTTGCCCAGACGGAGGCTTTAATGGCCGGAAAGAC
GGTCGACGAGGCCAGGACCGAGCTGTCCAAGGCTGGCCTGTGCGGCAACG
AGCTGGATAACTTGTTGCCCCACAAGGTGTTCGTCGGCAACCGGCCCACA
AACTCGATTGTGGTGAAGAAGGTTTCACCTTTCACCCTAGGCGCGTTGAT
TGCGCTGTACGAGCACAAGATCTTCGTTCAGGGCATCATTTGGGACATCA
ACTCGTTCGACCAATGGGGTGTGGAGCTGGGCAAGCAGCTGGCCAAGGCC
ATCGAGCCGGAGCTGGATCACTGCAACGAGGTCTCCACGCACGACAGTTC
CACGAACGGTCTAATTAACTTCATCAAAGCCAATTGGAAGTAAAAGCTTT
CTAGACCAT
BS07320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-RC | 1677 | CG8251-PC | 1..1677 | 17..1693 | 8385 | 100 | Plus |
| Pgi-RB | 1677 | CG8251-PB | 1..1677 | 17..1693 | 8385 | 100 | Plus |
| Pgi-RA | 1677 | CG8251-PA | 1..1677 | 17..1693 | 8385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-RC | 2277 | CG8251-RC | 321..1997 | 17..1693 | 8385 | 100 | Plus |
| Pgi-RB | 2321 | CG8251-RB | 365..2041 | 17..1693 | 8385 | 100 | Plus |
| Pgi-RA | 2460 | CG8251-RA | 504..2180 | 17..1693 | 8385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8912605..8913190 | 733..148 | 2930 | 100 | Minus |
| 2R | 25286936 | 2R | 8911426..8911954 | 1502..974 | 2645 | 100 | Minus |
| 2R | 25286936 | 2R | 8912016..8912258 | 974..732 | 1215 | 100 | Minus |
| 2R | 25286936 | 2R | 8911180..8911371 | 1693..1502 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 8913433..8913566 | 150..17 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:19:46 has no hits.
BS07320.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:20 Download gff for
BS07320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RC | 1..1677 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:44 Download gff for
BS07320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RC | 418..2092 | 17..1691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:29 Download gff for
BS07320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 504..2178 | 17..1691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:20 Download gff for
BS07320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RC | 418..2094 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:01 Download gff for
BS07320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 504..2178 | 17..1691 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:01 Download gff for
BS07320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8911182..8911370 | 1503..1691 | 100 | <- | Minus |
| 2R | 8911426..8911954 | 974..1502 | 100 | <- | Minus |
| 2R | 8912017..8912256 | 734..973 | 100 | <- | Minus |
| 2R | 8912605..8913187 | 151..733 | 100 | <- | Minus |
| 2R | 8913433..8913566 | 17..150 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:29 Download gff for
BS07320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4798687..4798875 | 1503..1691 | 100 | <- | Minus |
| arm_2R | 4798931..4799459 | 974..1502 | 100 | <- | Minus |
| arm_2R | 4799522..4799761 | 734..973 | 100 | <- | Minus |
| arm_2R | 4800110..4800692 | 151..733 | 100 | <- | Minus |
| arm_2R | 4800938..4801071 | 17..150 | 100 | | Minus |
BS07320.pep Sequence
Translation from 16 to 1692
> BS07320.pep
MAGPLPPLNQEAAFQKLQEYYDSKGKDLNIKDLFVKDSKRFSKYSLRLHT
QNDGEILLDYSKNRINDEVWDLLLTLAKVRRVNAARDAMFSGQHINITEN
RAVLHTALRNRGTDPVLVDDKDVMPDVRAELAHMKEFTNMVISGVWRGCT
GKQITDVVNIGIGGSDLGPLMVTEALKPYGKGLHSHFVSNIDGTHLAEVL
KKVNYETTLFIVASKTFTTQETITNATSAKTWLLEHSKEPESVAKHFVAL
STNKEKVTEFGIDSTNMFGFWDWVGGRYSLWSAIGLSICLSIGFENFEQL
LDGAHFMDNHFKTTPFEKNAPVILALLGVWYSNFFKAETHALLPYDQYLH
RFAAYFQQGDMESNGKFVSKSGKPVKYSTGPIVWGEPGTNGQHAFYQLIH
QGTRLIPCDFIAPAQTHNPIAGGKHHKILLSNFLAQTEALMAGKTVDEAR
TELSKAGLCGNELDNLLPHKVFVGNRPTNSIVVKKVSPFTLGALIALYEH
KIFVQGIIWDINSFDQWGVELGKQLAKAIEPELDHCNEVSTHDSSTNGLI
NFIKANWK*
BS07320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-PC | 558 | CG8251-PC | 1..558 | 1..558 | 2950 | 100 | Plus |
| Pgi-PB | 558 | CG8251-PB | 1..558 | 1..558 | 2950 | 100 | Plus |
| Pgi-PA | 558 | CG8251-PA | 1..558 | 1..558 | 2950 | 100 | Plus |
