Clone BS07332 Report

Search the DGRC for BS07332

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG7251-RA
Protein status:BS07332.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07332.3prime Sequence

860 bp (785 high quality bases) assembled on 2006-01-06

> BS07332.3prime
ATGGTCTAGAAAGCTTCTACATTTGCGTCTGTTTAACTGGACCCATCCAT
GGAGTGGGATTCACATAGAGTTGAGATATGGTGCCTCGCAGTGAGTCCAT
GCCCTGATTGAGGGGCACCGGCTTGGGCTTGGCGTCCACATTGCTCATCC
ACTTCGACCAGGCATCCTGGGCCAGTTGCCGGCGCTGTTCCTCTTTCAAG
GCCTTGGACAACATGGCGCGTCGCTTCTCCTCGCGCTGCGCCTGCTGCTG
ACTCTGCTTTTTTAGCCACCAGTCCTCAACGACCCTGCGAATCTCGTCCT
TGGACACCTTGCGAATGCGTCTGGGTGCCGTCGATGAGCTCGGCCCGGAT
CCCAGCGATCCCAGTCCGGATAAGGACGATACGACGGGATTCTTGCGCAG
TGACTCCAACGGATTCTTGCGCAGAGCTATGCTGGCCTTCATGGCCGCGT
CTTGGATGTGGCTCTCCAGCTGCAAGTTTGCCGCCTGGCGGGCCTTGTCC
TTTAGCCACTGCTCGTAGCACATCCTGGCCAGCTGCTTGCGCTCCTCCGT
CCGCTGCTGCTTGAACTCCTGCTCCTCCTTGATTCGCCGCTGCTTCTCTA
GTAATTGCTGCTGCTTGGCTGAGTACCAGTTCTGATAGGCGGCCTCTGGT
TGGCGGTCCACCTTAATTCCCTTGCAGTGGCTGAGATAGTTGAGGGAGCT
TTCCTGCGAGCTGAGACACAGCGAGGGCACCAAGTTGCTCTGGATCTCCG
ATCGCTTGAGTCCGCCGAGCGACCAGTTGTCCGTAGATTGGGGCGAAAGA
TTTCCACCGTCGTCCTTGAAGAAGTATGTGCGTGTGGTGTTCTGGGCGAG
CGAGCTCGGC

BS07332.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7251-PA 966 CG7251-RA 123..966 860..17 4195 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7251-RB 1243 CG7251-RB 246..1089 860..17 4205 99.9 Minus
CG7251-RA 1209 CG7251-RA 246..1089 860..17 4205 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5587269..5587915 17..663 3235 100 Plus
2L 23513712 2L 5587969..5588169 660..860 990 99.5 Plus
Blast to na_te.dros performed 2015-02-12 03:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6937 621..485 139 58.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6818 615..532 123 60.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6860 615..532 123 60.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6818 615..553 117 65.1 Minus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4505..4573 617..549 111 62.3 Minus

BS07332.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:35 Download gff for BS07332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7251-PA 123..966 17..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:34 Download gff for BS07332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7251-PA 123..966 17..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:06 Download gff for BS07332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7251-RA 246..1096 9..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:56 Download gff for BS07332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7251-RA 246..1096 9..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:56 Download gff for BS07332.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5587262..5587913 9..661 99 <- Plus
2L 5587971..5588169 662..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:06 Download gff for BS07332.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5587262..5587913 9..661 99 <- Plus
arm_2L 5587971..5588169 662..860 99   Plus

BS07332.5prime Sequence

843 bp (827 high quality bases) assembled on 2006-01-06

> BS07332.5prime
GAAGTTATCAGTCGACATGGCATTTTGCGGCCACGTTACTTCCTCTGGAC
AAATAGTCCTGCGGGATGAGATCTTCAGCAGCAGGACTTGTATTGCGCGC
TCCCCGTCATCCGGAGGCTCACTAAACTCCATGTCTTCGCCGAGCTCGCT
CGCCCAGAACACCACACGCACATACTTCTTCAAGGACGACGGTGGAAATC
CTTCGCCCCAATCTACGGACAACTGGTCGCTCGGCGGACTCAAGCGATCG
GAGATCCAGAGCAACTTGGTGCCCTCGCTGTGTCTCAGCTCGCAGGAAAG
CTCCCTCAACTATCTCAGCCACTGCAAGGGAATTAAGGTGGACCGCCAAC
CAGAGGCCGCCTATCAGAACTGGTACTCAGCCAAGCAGCAGCAATTACTA
GAGAAGCAGCGGCGAATCAAGGAGGAGCAGGAGTTCAAGCAGCAGCGGAC
GGAGGAGCGCAAGCAGCTGGCCAGGATGTGCTACGAGCAGTGGCTAAAGG
ACAAGGCCCGCCAGGCGGCAAACTTGCAGCTGGAGAGCCACATCCAAGAC
GCGGCCATGAAGGCCAGCATAGCTCTGCGCAAGAATCCGTTGGAGTCACT
GCGCAAGAATCCCGTCGTATCGTCCTTATCCGGACTGGGATCGCTGGGAT
CCGGGCCGAGCTCATCGACGGCACCCAGACGCATTCGCAAGGTGTCCAAG
GACGAGATTCGCAGGGTCGTTGAGGACTGGTGGCTAAAAAAGCAGAGTCA
GCAGCAGGCGCAGCGCGAGGAGAAGCGACGCGCCATGTTGTCCAAGGCCT
TGAAAGAGGAACAGCGCCGGCAACTGGCCCAGGATGCCTGGTC

BS07332.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7251-PA 966 CG7251-RA 1..827 17..843 4110 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7251-RB 1243 CG7251-RB 124..950 17..843 4120 99.9 Plus
CG7251-RA 1209 CG7251-RA 124..950 17..843 4120 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5587408..5587915 843..336 2540 100 Minus
2L 23513712 2L 5587969..5588291 339..17 1600 99.7 Minus
Blast to na_te.dros performed 2015-02-11 11:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6937 378..514 139 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6818 384..467 123 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6860 384..467 123 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6818 384..446 117 65.1 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4505..4573 382..450 111 62.3 Plus

BS07332.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:36 Download gff for BS07332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7251-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:36 Download gff for BS07332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7251-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:08 Download gff for BS07332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7251-RA 115..950 4..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:22 Download gff for BS07332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7251-RA 115..950 4..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:22 Download gff for BS07332.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5587408..5587913 338..843 100 <- Minus
2L 5587971..5588300 4..337 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:08 Download gff for BS07332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5587408..5587913 338..843 100 <- Minus
arm_2L 5587971..5588300 4..337 98   Minus

BS07332.complete Sequence

998 bp (998 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635818

> BS07332.complete
GAAGTTATCAGTCGACATGGCATTTTGCGGCCACGTTACTTCCTCTGGAC
AAATAGTCCTGCGGGATGAGATCTTCAGCAGCAGGACTTGTATTGCGCGC
TCCCCGTCATCCGGAGGCTCACTAAACTCCATGTCTTCGCCGAGCTCGCT
CGCCCAGAACACCACACGCACATACTTCTTCAAGGACGACGGTGGAAATC
CTTCGCCCCAATCTACGGACAACTGGTCGCTCGGCGGACTCAAGCGATCG
GAGATCCAGAGCAACTTGGTGCCCTCGCTGTGTCTCAGCTCGCAGGAAAG
CTCCCTCAACTATCTCAGCCACTGCAAGGGAATTAAGGTGGACCGCCAAC
CAGAGGCCGCCTATCAGAACTGGTACTCAGCCAAGCAGCAGCAATTACTA
GAGAAGCAGCGGCGAATCAAGGAGGAGCAGGAGTTCAAGCAGCAGCGGAC
GGAGGAGCGCAAGCAGCTGGCCAGGATGTGCTACGAGCAGTGGCTAAAGG
ACAAGGCCCGCCAGGCGGCAAACTTGCAGCTGGAGAGCCACATCCAAGAC
GCGGCCATGAAGGCCAGCATAGCTCTGCGCAAGAATCCGTTGGAGTCACT
GCGCAAGAATCCCGTCGTATCGTCCTTATCCGGACTGGGATCGCTGGGAT
CCGGGCCGAGCTCATCGACGGCACCCAGACGCATTCGCAAGGTGTCCAAG
GACGAGATTCGCAGGGTCGTTGAGGACTGGTGGCTAAAAAAGCAGAGTCA
GCAGCAGGCGCAGCGCGAGGAGAAGCGACGCGCCATGTTGTCCAAGGCCT
TGAAAGAGGAACAGCGCCGGCAACTGGCCCAGGATGCCTGGTCGAAGTGG
ATGAGCAATGTGGACGCCAAGCCCAAGCCGGTGCCCCTCAATCAGGGCAT
GGACTCACTGCGAGGCACCATATCTCAACTCTATGTGAATCCCACTCCAT
GGATGGGTCCAGTTAAACAGACGCAAATGTAGAAGCTTTCTAGACCAT

BS07332.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7251-RB 966 CG7251-PB 1..966 17..982 4815 99.9 Plus
CG7251-RA 966 CG7251-PA 1..966 17..982 4815 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7251-RB 1243 CG7251-RB 124..1089 17..982 4815 99.9 Plus
CG7251-RA 1209 CG7251-RA 124..1089 17..982 4815 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5587269..5587915 982..336 3235 100 Minus
2L 23513712 2L 5587969..5588291 339..17 1600 99.7 Minus
Blast to na_te.dros performed 2014-11-27 14:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6937 378..514 139 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6818 384..467 123 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6860 384..467 123 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6818 384..446 117 65.1 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4505..4573 382..450 111 62.3 Plus

BS07332.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:59 Download gff for BS07332.complete
Subject Subject Range Query Range Percent Splice Strand
CG7251-RA 1..966 17..982 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:14 Download gff for BS07332.complete
Subject Subject Range Query Range Percent Splice Strand
CG7251-RA 115..1096 4..990 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:18 Download gff for BS07332.complete
Subject Subject Range Query Range Percent Splice Strand
CG7251-RA 124..1089 17..982 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:59 Download gff for BS07332.complete
Subject Subject Range Query Range Percent Splice Strand
CG7251-RA 115..1096 4..990 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:40 Download gff for BS07332.complete
Subject Subject Range Query Range Percent Splice Strand
CG7251-RA 124..1089 17..982 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:40 Download gff for BS07332.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5587269..5587913 338..982 100 <- Minus
2L 5587971..5588291 17..337 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:18 Download gff for BS07332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5587269..5587913 338..982 100 <- Minus
arm_2L 5587971..5588291 17..337 99   Minus

BS07332.pep Sequence

Translation from 16 to 981

> BS07332.pep
MAFCGHVTSSGQIVLRDEIFSSRTCIARSPSSGGSLNSMSSPSSLAQNTT
RTYFFKDDGGNPSPQSTDNWSLGGLKRSEIQSNLVPSLCLSSQESSLNYL
SHCKGIKVDRQPEAAYQNWYSAKQQQLLEKQRRIKEEQEFKQQRTEERKQ
LARMCYEQWLKDKARQAANLQLESHIQDAAMKASIALRKNPLESLRKNPV
VSSLSGLGSLGSGPSSSTAPRRIRKVSKDEIRRVVEDWWLKKQSQQQAQR
EEKRRAMLSKALKEEQRRQLAQDAWSKWMSNVDAKPKPVPLNQGMDSLRG
TISQLYVNPTPWMGPVKQTQM*

BS07332.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7251-PB 321 CG7251-PB 1..321 1..321 1655 100 Plus
CG7251-PA 321 CG7251-PA 1..321 1..321 1655 100 Plus
CG18266-PA 486 CG18266-PA 230..477 47..316 311 31.7 Plus
CG14011-PC 388 CG14011-PC 137..387 29..313 290 31.1 Plus
CG14011-PB 388 CG14011-PB 137..387 29..313 290 31.1 Plus