Clone Sequence Records
BS07332.3prime Sequence
860 bp (785 high quality bases) assembled on 2006-01-06
> BS07332.3prime
ATGGTCTAGAAAGCTTCTACATTTGCGTCTGTTTAACTGGACCCATCCAT
GGAGTGGGATTCACATAGAGTTGAGATATGGTGCCTCGCAGTGAGTCCAT
GCCCTGATTGAGGGGCACCGGCTTGGGCTTGGCGTCCACATTGCTCATCC
ACTTCGACCAGGCATCCTGGGCCAGTTGCCGGCGCTGTTCCTCTTTCAAG
GCCTTGGACAACATGGCGCGTCGCTTCTCCTCGCGCTGCGCCTGCTGCTG
ACTCTGCTTTTTTAGCCACCAGTCCTCAACGACCCTGCGAATCTCGTCCT
TGGACACCTTGCGAATGCGTCTGGGTGCCGTCGATGAGCTCGGCCCGGAT
CCCAGCGATCCCAGTCCGGATAAGGACGATACGACGGGATTCTTGCGCAG
TGACTCCAACGGATTCTTGCGCAGAGCTATGCTGGCCTTCATGGCCGCGT
CTTGGATGTGGCTCTCCAGCTGCAAGTTTGCCGCCTGGCGGGCCTTGTCC
TTTAGCCACTGCTCGTAGCACATCCTGGCCAGCTGCTTGCGCTCCTCCGT
CCGCTGCTGCTTGAACTCCTGCTCCTCCTTGATTCGCCGCTGCTTCTCTA
GTAATTGCTGCTGCTTGGCTGAGTACCAGTTCTGATAGGCGGCCTCTGGT
TGGCGGTCCACCTTAATTCCCTTGCAGTGGCTGAGATAGTTGAGGGAGCT
TTCCTGCGAGCTGAGACACAGCGAGGGCACCAAGTTGCTCTGGATCTCCG
ATCGCTTGAGTCCGCCGAGCGACCAGTTGTCCGTAGATTGGGGCGAAAGA
TTTCCACCGTCGTCCTTGAAGAAGTATGTGCGTGTGGTGTTCTGGGCGAG
CGAGCTCGGC
BS07332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-PA | 966 | CG7251-RA | 123..966 | 860..17 | 4195 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-RB | 1243 | CG7251-RB | 246..1089 | 860..17 | 4205 | 99.9 | Minus |
CG7251-RA | 1209 | CG7251-RA | 246..1089 | 860..17 | 4205 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5587269..5587915 | 17..663 | 3235 | 100 | Plus |
2L | 23513712 | 2L | 5587969..5588169 | 660..860 | 990 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-12 03:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6937 | 621..485 | 139 | 58.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6818 | 615..532 | 123 | 60.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6860 | 615..532 | 123 | 60.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6818 | 615..553 | 117 | 65.1 | Minus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4573 | 617..549 | 111 | 62.3 | Minus |
BS07332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:35 Download gff for
BS07332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-PA | 123..966 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:34 Download gff for
BS07332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-PA | 123..966 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:06 Download gff for
BS07332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 246..1096 | 9..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:56 Download gff for
BS07332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 246..1096 | 9..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:56 Download gff for
BS07332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5587262..5587913 | 9..661 | 99 | <- | Plus |
2L | 5587971..5588169 | 662..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:06 Download gff for
BS07332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5587262..5587913 | 9..661 | 99 | <- | Plus |
arm_2L | 5587971..5588169 | 662..860 | 99 | | Plus |
BS07332.5prime Sequence
843 bp (827 high quality bases) assembled on 2006-01-06
> BS07332.5prime
GAAGTTATCAGTCGACATGGCATTTTGCGGCCACGTTACTTCCTCTGGAC
AAATAGTCCTGCGGGATGAGATCTTCAGCAGCAGGACTTGTATTGCGCGC
TCCCCGTCATCCGGAGGCTCACTAAACTCCATGTCTTCGCCGAGCTCGCT
CGCCCAGAACACCACACGCACATACTTCTTCAAGGACGACGGTGGAAATC
CTTCGCCCCAATCTACGGACAACTGGTCGCTCGGCGGACTCAAGCGATCG
GAGATCCAGAGCAACTTGGTGCCCTCGCTGTGTCTCAGCTCGCAGGAAAG
CTCCCTCAACTATCTCAGCCACTGCAAGGGAATTAAGGTGGACCGCCAAC
CAGAGGCCGCCTATCAGAACTGGTACTCAGCCAAGCAGCAGCAATTACTA
GAGAAGCAGCGGCGAATCAAGGAGGAGCAGGAGTTCAAGCAGCAGCGGAC
GGAGGAGCGCAAGCAGCTGGCCAGGATGTGCTACGAGCAGTGGCTAAAGG
ACAAGGCCCGCCAGGCGGCAAACTTGCAGCTGGAGAGCCACATCCAAGAC
GCGGCCATGAAGGCCAGCATAGCTCTGCGCAAGAATCCGTTGGAGTCACT
GCGCAAGAATCCCGTCGTATCGTCCTTATCCGGACTGGGATCGCTGGGAT
CCGGGCCGAGCTCATCGACGGCACCCAGACGCATTCGCAAGGTGTCCAAG
GACGAGATTCGCAGGGTCGTTGAGGACTGGTGGCTAAAAAAGCAGAGTCA
GCAGCAGGCGCAGCGCGAGGAGAAGCGACGCGCCATGTTGTCCAAGGCCT
TGAAAGAGGAACAGCGCCGGCAACTGGCCCAGGATGCCTGGTC
BS07332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-PA | 966 | CG7251-RA | 1..827 | 17..843 | 4110 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-RB | 1243 | CG7251-RB | 124..950 | 17..843 | 4120 | 99.9 | Plus |
CG7251-RA | 1209 | CG7251-RA | 124..950 | 17..843 | 4120 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5587408..5587915 | 843..336 | 2540 | 100 | Minus |
2L | 23513712 | 2L | 5587969..5588291 | 339..17 | 1600 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-11 11:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6937 | 378..514 | 139 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6818 | 384..467 | 123 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6860 | 384..467 | 123 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6818 | 384..446 | 117 | 65.1 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4573 | 382..450 | 111 | 62.3 | Plus |
BS07332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:36 Download gff for
BS07332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-PA | 1..827 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:36 Download gff for
BS07332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-PA | 1..827 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:08 Download gff for
BS07332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 115..950 | 4..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:22 Download gff for
BS07332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 115..950 | 4..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:22 Download gff for
BS07332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5587408..5587913 | 338..843 | 100 | <- | Minus |
2L | 5587971..5588300 | 4..337 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:08 Download gff for
BS07332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5587408..5587913 | 338..843 | 100 | <- | Minus |
arm_2L | 5587971..5588300 | 4..337 | 98 | | Minus |
BS07332.complete Sequence
998 bp (998 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635818
> BS07332.complete
GAAGTTATCAGTCGACATGGCATTTTGCGGCCACGTTACTTCCTCTGGAC
AAATAGTCCTGCGGGATGAGATCTTCAGCAGCAGGACTTGTATTGCGCGC
TCCCCGTCATCCGGAGGCTCACTAAACTCCATGTCTTCGCCGAGCTCGCT
CGCCCAGAACACCACACGCACATACTTCTTCAAGGACGACGGTGGAAATC
CTTCGCCCCAATCTACGGACAACTGGTCGCTCGGCGGACTCAAGCGATCG
GAGATCCAGAGCAACTTGGTGCCCTCGCTGTGTCTCAGCTCGCAGGAAAG
CTCCCTCAACTATCTCAGCCACTGCAAGGGAATTAAGGTGGACCGCCAAC
CAGAGGCCGCCTATCAGAACTGGTACTCAGCCAAGCAGCAGCAATTACTA
GAGAAGCAGCGGCGAATCAAGGAGGAGCAGGAGTTCAAGCAGCAGCGGAC
GGAGGAGCGCAAGCAGCTGGCCAGGATGTGCTACGAGCAGTGGCTAAAGG
ACAAGGCCCGCCAGGCGGCAAACTTGCAGCTGGAGAGCCACATCCAAGAC
GCGGCCATGAAGGCCAGCATAGCTCTGCGCAAGAATCCGTTGGAGTCACT
GCGCAAGAATCCCGTCGTATCGTCCTTATCCGGACTGGGATCGCTGGGAT
CCGGGCCGAGCTCATCGACGGCACCCAGACGCATTCGCAAGGTGTCCAAG
GACGAGATTCGCAGGGTCGTTGAGGACTGGTGGCTAAAAAAGCAGAGTCA
GCAGCAGGCGCAGCGCGAGGAGAAGCGACGCGCCATGTTGTCCAAGGCCT
TGAAAGAGGAACAGCGCCGGCAACTGGCCCAGGATGCCTGGTCGAAGTGG
ATGAGCAATGTGGACGCCAAGCCCAAGCCGGTGCCCCTCAATCAGGGCAT
GGACTCACTGCGAGGCACCATATCTCAACTCTATGTGAATCCCACTCCAT
GGATGGGTCCAGTTAAACAGACGCAAATGTAGAAGCTTTCTAGACCAT
BS07332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-RB | 966 | CG7251-PB | 1..966 | 17..982 | 4815 | 99.9 | Plus |
CG7251-RA | 966 | CG7251-PA | 1..966 | 17..982 | 4815 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-RB | 1243 | CG7251-RB | 124..1089 | 17..982 | 4815 | 99.9 | Plus |
CG7251-RA | 1209 | CG7251-RA | 124..1089 | 17..982 | 4815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5587269..5587915 | 982..336 | 3235 | 100 | Minus |
2L | 23513712 | 2L | 5587969..5588291 | 339..17 | 1600 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-27 14:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6937 | 378..514 | 139 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6818 | 384..467 | 123 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6860 | 384..467 | 123 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6818 | 384..446 | 117 | 65.1 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4573 | 382..450 | 111 | 62.3 | Plus |
BS07332.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:59 Download gff for
BS07332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 1..966 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:14 Download gff for
BS07332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 115..1096 | 4..990 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:18 Download gff for
BS07332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 124..1089 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:59 Download gff for
BS07332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 115..1096 | 4..990 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:40 Download gff for
BS07332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 124..1089 | 17..982 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:40 Download gff for
BS07332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5587269..5587913 | 338..982 | 100 | <- | Minus |
2L | 5587971..5588291 | 17..337 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:18 Download gff for
BS07332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5587269..5587913 | 338..982 | 100 | <- | Minus |
arm_2L | 5587971..5588291 | 17..337 | 99 | | Minus |
BS07332.pep Sequence
Translation from 16 to 981
> BS07332.pep
MAFCGHVTSSGQIVLRDEIFSSRTCIARSPSSGGSLNSMSSPSSLAQNTT
RTYFFKDDGGNPSPQSTDNWSLGGLKRSEIQSNLVPSLCLSSQESSLNYL
SHCKGIKVDRQPEAAYQNWYSAKQQQLLEKQRRIKEEQEFKQQRTEERKQ
LARMCYEQWLKDKARQAANLQLESHIQDAAMKASIALRKNPLESLRKNPV
VSSLSGLGSLGSGPSSSTAPRRIRKVSKDEIRRVVEDWWLKKQSQQQAQR
EEKRRAMLSKALKEEQRRQLAQDAWSKWMSNVDAKPKPVPLNQGMDSLRG
TISQLYVNPTPWMGPVKQTQM*
BS07332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-PB | 321 | CG7251-PB | 1..321 | 1..321 | 1655 | 100 | Plus |
CG7251-PA | 321 | CG7251-PA | 1..321 | 1..321 | 1655 | 100 | Plus |
CG18266-PA | 486 | CG18266-PA | 230..477 | 47..316 | 311 | 31.7 | Plus |
CG14011-PC | 388 | CG14011-PC | 137..387 | 29..313 | 290 | 31.1 | Plus |
CG14011-PB | 388 | CG14011-PB | 137..387 | 29..313 | 290 | 31.1 | Plus |