Clone BS07333 Report

Search the DGRC for BS07333

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG2046-RA
Protein status:BS07333.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07333.3prime Sequence

738 bp (737 high quality bases) assembled on 2006-01-06

> BS07333.3prime
ATGGTCTAGAAAGCTTTCACATGTACAAATAAGAGCTCTCCTTCCGCGGA
GGGATGTAGCTCGAGCTGCAGGCAACGCCCGCGGCTTTAAGTACCTTGAT
CACTGGCTGCGCAGCTGTGGCGTCGAGGGGCAGCTTGTCGGTGTAAATAA
CGAAAGAGGTAACAGGCAATTCCATCTGATCCCGCCAACTGGCAACGCCT
GCTGCAACTCCAGCGATAAAGTTGGGAGCCTCTAGTTCAGTGATATCCTT
CTGGTTGGCACCTATGCCGCGGACAACGGCAATGTGATCCCGGTAGAGCT
GGATGTCCTCGCTTTTGAACTCGACCTTTGGCTTAAGCGTCAGAGTGATC
ACTTTCTTGGCAAGCTTCACGTACGGCAGTAGGAGCTCCGCTACCTCGCC
GCTACTGGTCAGGTCCTCGTTGATTATGGCCAGCAACTGTTTGGACGAAT
GACTCCAGTGCAGGGTCGAGTTATTGGCAGGAATGGCGCACACACGCTTT
GCATCCTTTTCCAGCAGAGAAGAGGCGAAGTGAGTGACGTTGACGCCCTC
AATGACCACCAGCATCTCGCTCTCCACAGGGGCAGCTTCCCCATCGCAAT
CATCATCAAACTTCAGCTGCAGCTTCTCCACCGGCTTAAGGTTCTCCAAT
TCATCCTCGTCGCAGTCGTCCCAGAAGGCACGCGACGAGGGTATATTTAG
TTCTCCAAATCCTGGACAGCTCATGTCGACTGATAACT

BS07333.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2046-PA 708 CG2046-RA 1..708 724..17 3540 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2046-RA 893 CG2046-RA 96..805 724..15 3550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5793641..5794068 196..623 2140 100 Plus
3R 32079331 3R 5793396..5793577 15..196 910 100 Plus
3R 32079331 3R 5794121..5794222 623..724 510 100 Plus
Blast to na_te.dros performed 2015-02-12 00:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 1743..1806 488..427 116 68.8 Minus

BS07333.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:37 Download gff for BS07333.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2046-PA 1..708 17..724 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:37 Download gff for BS07333.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2046-PA 1..708 17..724 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:12 Download gff for BS07333.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2046-RA 88..810 8..732 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:35 Download gff for BS07333.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2046-RA 88..810 8..732 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:35 Download gff for BS07333.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5793391..5793576 8..195 98 <- Plus
3R 5793641..5794068 196..623 100 <- Plus
3R 5794122..5794230 624..732 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:12 Download gff for BS07333.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1619113..1619298 8..195 98 <- Plus
arm_3R 1619363..1619790 196..623 100 <- Plus
arm_3R 1619844..1619952 624..732 97   Plus

BS07333.5prime Sequence

738 bp (737 high quality bases) assembled on 2006-01-06

> BS07333.5prime
GAAGTTATCAGTCGACATGAGCTGTCCAGGATTTGGAGAACTAAATATAC
CCTCGTCGCGTGCCTTCTGGGACGACTGCGACGAGGATGAATTGGAGAAC
CTTAAGCCGGTGGAGAAGCTGCAGCTGAAGTTTGATGATGATTGCGATGG
GGAAGCTGCCCCTGTGGAGAGCGAGATGCTGGTGGTCATTGAGGGCGTCA
ACGTCACTCACTTCGCCTCTTCTCTGCTGGAAAAGGATGCAAAGCGTGTG
TGCGCCATTCCTGCCAATAACTCGACCCTGCACTGGAGTCATTCGTCCAA
ACAGTTGCTGGCCATAATCAACGAGGACCTGACCAGTAGCGGCGAGGTAG
CGGAGCTCCTACTGCCGTACGTGAAGCTTGCCAAGAAAGTGATCACTCTG
ACGCTTAAGCCAAAGGTCGAGTTCAAAAGCGAGGACATCCAGCTCTACCG
GGATCACATTGCCGTTGTCCGCGGCATAGGTGCCAACCAGAAGGATATCA
CTGAACTAGAGGCTCCCAACTTTATCGCTGGAGTTGCAGCAGGCGTTGCC
AGTTGGCGGGATCAGATGGAATTGCCTGTTACCTCTTTCGTTATTTACAC
CGACAAGCTGCCCCTCGACGCCACAGCTGCGCAGCCAGTGATCAAGGTAC
TTAAAGCCGCGGGCGTTGCCTGCAGCTCGAGCTACATCCCTCCGCGGAAG
GAGAGCTCTTATTTGTACATGTGAAAGCTTTCTAGACC

BS07333.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2046-PA 708 CG2046-RA 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2046-RA 893 CG2046-RA 96..805 17..726 3550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5793641..5794068 545..118 2140 100 Minus
3R 32079331 3R 5793396..5793577 726..545 910 100 Minus
3R 32079331 3R 5794121..5794222 118..17 510 100 Minus
Blast to na_te.dros performed 2015-02-10 20:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 1743..1806 253..314 116 68.8 Plus

BS07333.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:39 Download gff for BS07333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2046-PA 1..708 17..724 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:39 Download gff for BS07333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2046-PA 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:32:58 Download gff for BS07333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2046-RA 88..810 9..733 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:08 Download gff for BS07333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2046-RA 88..810 9..733 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:08 Download gff for BS07333.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5793391..5793576 546..733 98 <- Minus
3R 5793641..5794068 118..545 100 <- Minus
3R 5794122..5794230 9..117 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:32:58 Download gff for BS07333.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1619113..1619298 546..733 98 <- Minus
arm_3R 1619363..1619790 118..545 100 <- Minus
arm_3R 1619844..1619952 9..117 97   Minus

BS07333.complete Sequence

740 bp (740 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635819

> BS07333.complete
GAAGTTATCAGTCGACATGAGCTGTCCAGGATTTGGAGAACTAAATATAC
CCTCGTCGCGTGCCTTCTGGGACGACTGCGACGAGGATGAATTGGAGAAC
CTTAAGCCGGTGGAGAAGCTGCAGCTGAAGTTTGATGATGATTGCGATGG
GGAAGCTGCCCCTGTGGAGAGCGAGATGCTGGTGGTCATTGAGGGCGTCA
ACGTCACTCACTTCGCCTCTTCTCTGCTGGAAAAGGATGCAAAGCGTGTG
TGCGCCATTCCTGCCAATAACTCGACCCTGCACTGGAGTCATTCGTCCAA
ACAGTTGCTGGCCATAATCAACGAGGACCTGACCAGTAGCGGCGAGGTAG
CGGAGCTCCTACTGCCGTACGTGAAGCTTGCCAAGAAAGTGATCACTCTG
ACGCTTAAGCCAAAGGTCGAGTTCAAAAGCGAGGACATCCAGCTCTACCG
GGATCACATTGCCGTTGTCCGCGGCATAGGTGCCAACCAGAAGGATATCA
CTGAACTAGAGGCTCCCAACTTTATCGCTGGAGTTGCAGCAGGCGTTGCC
AGTTGGCGGGATCAGATGGAATTGCCTGTTACCTCTTTCGTTATTTACAC
CGACAAGCTGCCCCTCGACGCCACAGCTGCGCAGCCAGTGATCAAGGTAC
TTAAAGCCGCGGGCGTTGCCTGCAGCTCGAGCTACATCCCTCCGCGGAAG
GAGAGCTCTTATTTGTACATGTGAAAGCTTTCTAGACCAT

BS07333.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2046-RA 708 CG2046-PA 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2046-RA 893 CG2046-RA 96..805 17..726 3550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5793641..5794068 545..118 2140 100 Minus
3R 32079331 3R 5793396..5793577 726..545 910 100 Minus
3R 32079331 3R 5794121..5794222 118..17 510 100 Minus
Blast to na_te.dros performed 2014-11-28 00:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 1743..1806 253..314 116 68.8 Plus

BS07333.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:32 Download gff for BS07333.complete
Subject Subject Range Query Range Percent Splice Strand
CG2046-RA 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:47 Download gff for BS07333.complete
Subject Subject Range Query Range Percent Splice Strand
CG2046-RA 102..824 9..733 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:33 Download gff for BS07333.complete
Subject Subject Range Query Range Percent Splice Strand
CG2046-RA 96..802 17..723 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:32 Download gff for BS07333.complete
Subject Subject Range Query Range Percent Splice Strand
CG2046-RA 102..824 9..733 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:25 Download gff for BS07333.complete
Subject Subject Range Query Range Percent Splice Strand
CG2046-RA 96..802 17..723 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:25 Download gff for BS07333.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5794122..5794222 17..117 100   Minus
3R 5793399..5793576 546..723 100 <- Minus
3R 5793641..5794068 118..545 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:33 Download gff for BS07333.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1619121..1619298 546..723 100 <- Minus
arm_3R 1619363..1619790 118..545 100 <- Minus
arm_3R 1619844..1619944 17..117 100   Minus

BS07333.pep Sequence

Translation from 16 to 723

> BS07333.pep
MSCPGFGELNIPSSRAFWDDCDEDELENLKPVEKLQLKFDDDCDGEAAPV
ESEMLVVIEGVNVTHFASSLLEKDAKRVCAIPANNSTLHWSHSSKQLLAI
INEDLTSSGEVAELLLPYVKLAKKVITLTLKPKVEFKSEDIQLYRDHIAV
VRGIGANQKDITELEAPNFIAGVAAGVASWRDQMELPVTSFVIYTDKLPL
DATAAQPVIKVLKAAGVACSSSYIPPRKESSYLYM*

BS07333.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2046-PA 235 CG2046-PA 1..235 1..235 1202 100 Plus