Clone Sequence Records
BS07333.3prime Sequence
738 bp (737 high quality bases) assembled on 2006-01-06
> BS07333.3prime
ATGGTCTAGAAAGCTTTCACATGTACAAATAAGAGCTCTCCTTCCGCGGA
GGGATGTAGCTCGAGCTGCAGGCAACGCCCGCGGCTTTAAGTACCTTGAT
CACTGGCTGCGCAGCTGTGGCGTCGAGGGGCAGCTTGTCGGTGTAAATAA
CGAAAGAGGTAACAGGCAATTCCATCTGATCCCGCCAACTGGCAACGCCT
GCTGCAACTCCAGCGATAAAGTTGGGAGCCTCTAGTTCAGTGATATCCTT
CTGGTTGGCACCTATGCCGCGGACAACGGCAATGTGATCCCGGTAGAGCT
GGATGTCCTCGCTTTTGAACTCGACCTTTGGCTTAAGCGTCAGAGTGATC
ACTTTCTTGGCAAGCTTCACGTACGGCAGTAGGAGCTCCGCTACCTCGCC
GCTACTGGTCAGGTCCTCGTTGATTATGGCCAGCAACTGTTTGGACGAAT
GACTCCAGTGCAGGGTCGAGTTATTGGCAGGAATGGCGCACACACGCTTT
GCATCCTTTTCCAGCAGAGAAGAGGCGAAGTGAGTGACGTTGACGCCCTC
AATGACCACCAGCATCTCGCTCTCCACAGGGGCAGCTTCCCCATCGCAAT
CATCATCAAACTTCAGCTGCAGCTTCTCCACCGGCTTAAGGTTCTCCAAT
TCATCCTCGTCGCAGTCGTCCCAGAAGGCACGCGACGAGGGTATATTTAG
TTCTCCAAATCCTGGACAGCTCATGTCGACTGATAACT
BS07333.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-PA | 708 | CG2046-RA | 1..708 | 724..17 | 3540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-RA | 893 | CG2046-RA | 96..805 | 724..15 | 3550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5793641..5794068 | 196..623 | 2140 | 100 | Plus |
3R | 32079331 | 3R | 5793396..5793577 | 15..196 | 910 | 100 | Plus |
3R | 32079331 | 3R | 5794121..5794222 | 623..724 | 510 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 1743..1806 | 488..427 | 116 | 68.8 | Minus |
BS07333.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:37 Download gff for
BS07333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-PA | 1..708 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:37 Download gff for
BS07333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-PA | 1..708 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:12 Download gff for
BS07333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 88..810 | 8..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:35 Download gff for
BS07333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 88..810 | 8..732 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:35 Download gff for
BS07333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5793391..5793576 | 8..195 | 98 | <- | Plus |
3R | 5793641..5794068 | 196..623 | 100 | <- | Plus |
3R | 5794122..5794230 | 624..732 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:12 Download gff for
BS07333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1619113..1619298 | 8..195 | 98 | <- | Plus |
arm_3R | 1619363..1619790 | 196..623 | 100 | <- | Plus |
arm_3R | 1619844..1619952 | 624..732 | 97 | | Plus |
BS07333.5prime Sequence
738 bp (737 high quality bases) assembled on 2006-01-06
> BS07333.5prime
GAAGTTATCAGTCGACATGAGCTGTCCAGGATTTGGAGAACTAAATATAC
CCTCGTCGCGTGCCTTCTGGGACGACTGCGACGAGGATGAATTGGAGAAC
CTTAAGCCGGTGGAGAAGCTGCAGCTGAAGTTTGATGATGATTGCGATGG
GGAAGCTGCCCCTGTGGAGAGCGAGATGCTGGTGGTCATTGAGGGCGTCA
ACGTCACTCACTTCGCCTCTTCTCTGCTGGAAAAGGATGCAAAGCGTGTG
TGCGCCATTCCTGCCAATAACTCGACCCTGCACTGGAGTCATTCGTCCAA
ACAGTTGCTGGCCATAATCAACGAGGACCTGACCAGTAGCGGCGAGGTAG
CGGAGCTCCTACTGCCGTACGTGAAGCTTGCCAAGAAAGTGATCACTCTG
ACGCTTAAGCCAAAGGTCGAGTTCAAAAGCGAGGACATCCAGCTCTACCG
GGATCACATTGCCGTTGTCCGCGGCATAGGTGCCAACCAGAAGGATATCA
CTGAACTAGAGGCTCCCAACTTTATCGCTGGAGTTGCAGCAGGCGTTGCC
AGTTGGCGGGATCAGATGGAATTGCCTGTTACCTCTTTCGTTATTTACAC
CGACAAGCTGCCCCTCGACGCCACAGCTGCGCAGCCAGTGATCAAGGTAC
TTAAAGCCGCGGGCGTTGCCTGCAGCTCGAGCTACATCCCTCCGCGGAAG
GAGAGCTCTTATTTGTACATGTGAAAGCTTTCTAGACC
BS07333.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-PA | 708 | CG2046-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-RA | 893 | CG2046-RA | 96..805 | 17..726 | 3550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5793641..5794068 | 545..118 | 2140 | 100 | Minus |
3R | 32079331 | 3R | 5793396..5793577 | 726..545 | 910 | 100 | Minus |
3R | 32079331 | 3R | 5794121..5794222 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 20:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 1743..1806 | 253..314 | 116 | 68.8 | Plus |
BS07333.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:39 Download gff for
BS07333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:39 Download gff for
BS07333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:32:58 Download gff for
BS07333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 88..810 | 9..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:08 Download gff for
BS07333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 88..810 | 9..733 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:08 Download gff for
BS07333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5793391..5793576 | 546..733 | 98 | <- | Minus |
3R | 5793641..5794068 | 118..545 | 100 | <- | Minus |
3R | 5794122..5794230 | 9..117 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:32:58 Download gff for
BS07333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1619113..1619298 | 546..733 | 98 | <- | Minus |
arm_3R | 1619363..1619790 | 118..545 | 100 | <- | Minus |
arm_3R | 1619844..1619952 | 9..117 | 97 | | Minus |
BS07333.complete Sequence
740 bp (740 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635819
> BS07333.complete
GAAGTTATCAGTCGACATGAGCTGTCCAGGATTTGGAGAACTAAATATAC
CCTCGTCGCGTGCCTTCTGGGACGACTGCGACGAGGATGAATTGGAGAAC
CTTAAGCCGGTGGAGAAGCTGCAGCTGAAGTTTGATGATGATTGCGATGG
GGAAGCTGCCCCTGTGGAGAGCGAGATGCTGGTGGTCATTGAGGGCGTCA
ACGTCACTCACTTCGCCTCTTCTCTGCTGGAAAAGGATGCAAAGCGTGTG
TGCGCCATTCCTGCCAATAACTCGACCCTGCACTGGAGTCATTCGTCCAA
ACAGTTGCTGGCCATAATCAACGAGGACCTGACCAGTAGCGGCGAGGTAG
CGGAGCTCCTACTGCCGTACGTGAAGCTTGCCAAGAAAGTGATCACTCTG
ACGCTTAAGCCAAAGGTCGAGTTCAAAAGCGAGGACATCCAGCTCTACCG
GGATCACATTGCCGTTGTCCGCGGCATAGGTGCCAACCAGAAGGATATCA
CTGAACTAGAGGCTCCCAACTTTATCGCTGGAGTTGCAGCAGGCGTTGCC
AGTTGGCGGGATCAGATGGAATTGCCTGTTACCTCTTTCGTTATTTACAC
CGACAAGCTGCCCCTCGACGCCACAGCTGCGCAGCCAGTGATCAAGGTAC
TTAAAGCCGCGGGCGTTGCCTGCAGCTCGAGCTACATCCCTCCGCGGAAG
GAGAGCTCTTATTTGTACATGTGAAAGCTTTCTAGACCAT
BS07333.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-RA | 708 | CG2046-PA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-RA | 893 | CG2046-RA | 96..805 | 17..726 | 3550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5793641..5794068 | 545..118 | 2140 | 100 | Minus |
3R | 32079331 | 3R | 5793396..5793577 | 726..545 | 910 | 100 | Minus |
3R | 32079331 | 3R | 5794121..5794222 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 1743..1806 | 253..314 | 116 | 68.8 | Plus |
BS07333.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:32 Download gff for
BS07333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:47 Download gff for
BS07333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 102..824 | 9..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:33 Download gff for
BS07333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 96..802 | 17..723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:32 Download gff for
BS07333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 102..824 | 9..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:25 Download gff for
BS07333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 96..802 | 17..723 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:25 Download gff for
BS07333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5794122..5794222 | 17..117 | 100 | | Minus |
3R | 5793399..5793576 | 546..723 | 100 | <- | Minus |
3R | 5793641..5794068 | 118..545 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:33 Download gff for
BS07333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1619121..1619298 | 546..723 | 100 | <- | Minus |
arm_3R | 1619363..1619790 | 118..545 | 100 | <- | Minus |
arm_3R | 1619844..1619944 | 17..117 | 100 | | Minus |
BS07333.pep Sequence
Translation from 16 to 723
> BS07333.pep
MSCPGFGELNIPSSRAFWDDCDEDELENLKPVEKLQLKFDDDCDGEAAPV
ESEMLVVIEGVNVTHFASSLLEKDAKRVCAIPANNSTLHWSHSSKQLLAI
INEDLTSSGEVAELLLPYVKLAKKVITLTLKPKVEFKSEDIQLYRDHIAV
VRGIGANQKDITELEAPNFIAGVAAGVASWRDQMELPVTSFVIYTDKLPL
DATAAQPVIKVLKAAGVACSSSYIPPRKESSYLYM*
BS07333.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-PA | 235 | CG2046-PA | 1..235 | 1..235 | 1202 | 100 | Plus |