Clone Sequence Records
BS07337.3prime Sequence
864 bp (786 high quality bases) assembled on 2006-01-06
> BS07337.3prime
ATGGTCTAGAAAGCTTCTATGCATAGAACAGCCACAATATCCACACAACG
GCCAAATACGAAAACAGCTTGGACAGGGTCTGTTCATCCTCGTATTGCCT
TGTTCCCCGATTAGCAGCAGGTGGACGTGGTTCGCCAAAGTTGAGCGTAG
ATGTTATGAACCCGAAAGGAAAAGCTCCAATACCGAAAGACATGTGAAAT
CCGTCGCCGAATCCGAATCCAGGGAACCCGGGAACAGGATCTGGTTCTGT
ACGTTGTCCAGCGGGGCGTGGTGGAACTTTGTTACGTGGATCTTCCTGGT
GTGTACTATTTCTTCCGTACAGCGGTATGACCTTATCCTTATCAACGGCA
GCCTTACAAACGGGACAGAGTTTGCGATTGGGACGCGTCAGGAGCCACTG
ATGCAGGCACGGCCAGCAGAACAGATGGCCGCACATGCTGACCACAGCAT
CCTTGGCGGTGTCCAGGCATATGTTGCACTCGTAGAGTGAGTCGTCTGCG
GTATGTTCCTTCTCCTTGTCCTTTTCGTTGGCTTTTGTGTCCGTATCGGT
GCCGCCGAATGGATAGCCACCCTTCAGATCGGCCTTATTGCCACCAGATA
GATAGTCTCCAGTAAAGGAATACGAAGTGTTGGACTTCTTCAGTTCCGAT
GCCGTCGAATTGGTTGGAATCGAGGTACCCAGCGGGCGCAATTGACTTGT
AGATGACTCCTCAGCCAAGGGTTCTGTGATATCCCGAGTCCAGGCTATCT
TGTCGTAGCTCACGTTGTTGGACAAAGTCGATGAGGACGACGATGCCCCG
GTTGATGTGCTGGGAAGCTCCGCTGTGGGTACACTTTTCGGTTCCTCCAT
GTCGACTGATAACT
BS07337.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8974-PC | 834 | CG8974-RC | 1..834 | 850..17 | 4170 | 100 | Minus |
CG8974-PA | 834 | CG8974-RA | 1..834 | 850..17 | 4170 | 100 | Minus |
CG8974-PB | 834 | CG8974-RB | 1..834 | 850..17 | 4170 | 100 | Minus |
CG8974-PD | 834 | CG8974-RD | 1..834 | 850..17 | 4170 | 100 | Minus |
CG8974-PE | 834 | CG8974-RE | 1..834 | 850..17 | 4170 | 100 | Minus |
CG32581-PA | 675 | CG32581-RA | 1..544 | 850..307 | 2695 | 99.8 | Minus |
CG32581-PA | 675 | CG32581-RA | 545..675 | 284..154 | 655 | 100 | Minus |
CG32847-PB | 495 | CG32847-RB | 44..119 | 486..411 | 155 | 88.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8974-RE | 1317 | CG8974-RE | 103..937 | 851..17 | 4175 | 100 | Minus |
CG8974-RD | 1280 | CG8974-RD | 66..900 | 851..17 | 4175 | 100 | Minus |
CG8974-RB | 1389 | CG8974-RB | 175..1009 | 851..17 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15794497..15795063 | 285..851 | 2835 | 100 | Plus |
X | 23542271 | X | 15797667..15798233 | 285..851 | 2820 | 99.8 | Plus |
X | 23542271 | X | 15794267..15794434 | 118..285 | 840 | 100 | Plus |
X | 23542271 | X | 15797437..15797604 | 118..285 | 795 | 98.2 | Plus |
X | 23542271 | X | 15794101..15794202 | 17..118 | 510 | 100 | Plus |
3L | 28110227 | 3L | 15121665..15121843 | 486..308 | 310 | 78.2 | Minus |
Blast to na_te.dros performed on 2015-01-30 14:10:54 has no hits.
BS07337.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:46 Download gff for
BS07337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-PD | 1..834 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:49 Download gff for
BS07337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-PA | 1..834 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:00:21 Download gff for
BS07337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-RB | 170..1015 | 12..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:32:26 Download gff for
BS07337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-RB | 170..1015 | 12..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:32:26 Download gff for
BS07337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15794095..15794201 | 12..117 | 98 | <- | Plus |
X | 15794267..15794433 | 118..284 | 100 | <- | Plus |
X | 15794497..15795068 | 285..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:00:21 Download gff for
BS07337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15688128..15688234 | 12..117 | 98 | <- | Plus |
arm_X | 15688300..15688466 | 118..284 | 100 | <- | Plus |
arm_X | 15688530..15689101 | 285..858 | 99 | | Plus |
BS07337.5prime Sequence
846 bp (762 high quality bases) assembled on 2006-01-06
> BS07337.5prime
GAAGTTATCAGTCGACATGGAGGAACCGAAAAGTGTACCCACAGCGGAGC
TTCCCAGCACATCAACCGGGGCATCGTCGTCCTCATCGACTTTGTCCAAC
AACGTGAGCTACGACAAGATAGCCTGGACTCGGGATATCACAGAACCCTT
GGCTGAGGAGTCATCTACAAGTCAATTGCGCCCGCTGGGTACCTCGATTC
CAACCAATTCGACGGCATCGGAACTGAAGAAGTCCAACACTTCGTATTCC
TTTACTGGAGACTATCTATCTGGTGGCAATAAGGCCGATCTGAAGGGTGG
CTATCCATTCGGCGGCACCGATACGGACACAAAAGCCAACGAAAAGGACA
AGGAGAAGGAACATACCGCAGACGACTCACTCTACGAGTGCAACATATGC
CTGGACACCGCCAAGGATGCTGTGGTCAGCATGTGCGGCCATCTGTTCTG
CTGGCCGTGCCTGCATCAGTGGCTCCTGACGCGTCCCAATCGCAAACTCT
GTCCCGTTTGTAAGGCTGCCGTTGATAAGGATAAGGTCATACCGCTGTAC
GGAAGAAATAGTACACACCAGGAAGATCCACGTAACAAAGTTCCACCACG
CCCCGCTGGACAACGTACAGAACCAGATCCTGTTCCCGGGTTCCCTGGAT
TCGGATTCGGCGACGGATTTCACATGTCTTTCGGTATTGGAGCTTTTCCT
TTCGGGTTCATAACATCTACGCTCAACTTTGGCGAACCACGTCCACCTGC
TGCTAATCGGGGAACAAGGCAATACGAGGATGAACAGACCCTGTCCAAGC
TGTTTTCGTATTTGGCCGTTGTGTGGATATTGTGGCTGTTCTATGC
BS07337.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8974-PC | 834 | CG8974-RC | 1..830 | 17..846 | 4150 | 100 | Plus |
CG8974-PA | 834 | CG8974-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
CG8974-PB | 834 | CG8974-RB | 1..830 | 17..846 | 4150 | 100 | Plus |
CG8974-PD | 834 | CG8974-RD | 1..830 | 17..846 | 4150 | 100 | Plus |
CG8974-PE | 834 | CG8974-RE | 1..830 | 17..846 | 4150 | 100 | Plus |
CG32581-PA | 675 | CG32581-RA | 1..544 | 17..560 | 2695 | 99.8 | Plus |
CG32581-PA | 675 | CG32581-RA | 545..675 | 583..713 | 655 | 100 | Plus |
CG32847-PB | 495 | CG32847-RB | 44..119 | 381..456 | 155 | 88.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8974-RE | 1317 | CG8974-RE | 103..933 | 16..846 | 4155 | 100 | Plus |
CG8974-RD | 1280 | CG8974-RD | 66..896 | 16..846 | 4155 | 100 | Plus |
CG8974-RB | 1389 | CG8974-RB | 175..1005 | 16..846 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15794497..15795063 | 582..16 | 2835 | 100 | Minus |
X | 23542271 | X | 15797667..15798233 | 582..16 | 2820 | 99.8 | Minus |
X | 23542271 | X | 15794267..15794434 | 749..582 | 840 | 100 | Minus |
X | 23542271 | X | 15797437..15797604 | 749..582 | 795 | 98.2 | Minus |
X | 23542271 | X | 15794105..15794202 | 846..749 | 490 | 100 | Minus |
3L | 28110227 | 3L | 15121665..15121843 | 381..559 | 310 | 78.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:18:16 has no hits.
BS07337.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:47 Download gff for
BS07337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-PD | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:51 Download gff for
BS07337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:06:04 Download gff for
BS07337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-RB | 170..1005 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:23 Download gff for
BS07337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-RB | 170..1005 | 9..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:23 Download gff for
BS07337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15794105..15794201 | 750..846 | 100 | <- | Minus |
X | 15794267..15794433 | 583..749 | 100 | <- | Minus |
X | 15794497..15795068 | 9..582 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:06:04 Download gff for
BS07337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15688138..15688234 | 750..846 | 100 | <- | Minus |
arm_X | 15688300..15688466 | 583..749 | 100 | <- | Minus |
arm_X | 15688530..15689101 | 9..582 | 99 | | Minus |
BS07337.complete Sequence
866 bp (866 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635820
> BS07337.complete
GAAGTTATCAGTCGACATGGAGGAACCGAAAAGTGTACCCACAGCGGAGC
TTCCCAGCACATCAACCGGGGCATCGTCGTCCTCATCGACTTTGTCCAAC
AACGTGAGCTACGACAAGATAGCCTGGACTCGGGATATCACAGAACCCTT
GGCTGAGGAGTCATCTACAAGTCAATTGCGCCCGCTGGGTACCTCGATTC
CAACCAATTCGACGGCATCGGAACTGAAGAAGTCCAACACTTCGTATTCC
TTTACTGGAGACTATCTATCTGGTGGCAATAAGGCCGATCTGAAGGGTGG
CTATCCATTCGGCGGCACCGATACGGACACAAAAGCCAACGAAAAGGACA
AGGAGAAGGAACATACCGCAGACGACTCACTCTACGAGTGCAACATATGC
CTGGACACCGCCAAGGATGCTGTGGTCAGCATGTGCGGCCATCTGTTCTG
CTGGCCGTGCCTGCATCAGTGGCTCCTGACGCGTCCCAATCGCAAACTCT
GTCCCGTTTGTAAGGCTGCCGTTGATAAGGATAAGGTCATACCGCTGTAC
GGAAGAAATAGTACACACCAGGAAGATCCACGTAACAAAGTTCCACCACG
CCCCGCTGGACAACGTACAGAACCAGATCCTGTTCCCGGGTTCCCTGGAT
TCGGATTCGGCGACGGATTTCACATGTCTTTCGGTATTGGAGCTTTTCCT
TTCGGGTTCATAACATCTACGCTCAACTTTGGCGAACCACGTCCACCTGC
TGCTAATCGGGGAACAAGGCAATACGAGGATGAACAGACCCTGTCCAAGC
TGTTTTCGTATTTGGCCGTTGTGTGGATATTGTGGCTGTTCTATGCATAG
AAGCTTTCTAGACCAT
BS07337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8974-RE | 834 | CG8974-PE | 1..834 | 17..850 | 4170 | 100 | Plus |
CG8974-RD | 834 | CG8974-PD | 1..834 | 17..850 | 4170 | 100 | Plus |
CG8974-RB | 834 | CG8974-PB | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8974-RE | 1317 | CG8974-RE | 103..937 | 16..850 | 4175 | 100 | Plus |
CG8974-RD | 1280 | CG8974-RD | 66..900 | 16..850 | 4175 | 100 | Plus |
CG8974-RB | 1389 | CG8974-RB | 175..1009 | 16..850 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15794497..15795063 | 582..16 | 2835 | 100 | Minus |
X | 23542271 | X | 15797667..15798233 | 582..16 | 2820 | 99.8 | Minus |
X | 23542271 | X | 15794267..15794434 | 749..582 | 840 | 100 | Minus |
X | 23542271 | X | 15797437..15797604 | 749..582 | 795 | 98.2 | Minus |
X | 23542271 | X | 15794101..15794202 | 850..749 | 510 | 100 | Minus |
3L | 28110227 | 3L | 15121665..15121843 | 381..559 | 310 | 78.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:23:36 has no hits.
BS07337.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:33 Download gff for
BS07337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-RB | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:49 Download gff for
BS07337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-RB | 195..1040 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:54 Download gff for
BS07337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-RB | 176..1009 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:33 Download gff for
BS07337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-RB | 195..1040 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:43 Download gff for
BS07337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8974-RB | 176..1009 | 17..850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:43 Download gff for
BS07337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15794101..15794201 | 750..850 | 100 | <- | Minus |
X | 15794267..15794433 | 583..749 | 100 | <- | Minus |
X | 15794497..15795062 | 17..582 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:54 Download gff for
BS07337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15688134..15688234 | 750..850 | 100 | <- | Minus |
arm_X | 15688300..15688466 | 583..749 | 100 | <- | Minus |
arm_X | 15688530..15689095 | 17..582 | 100 | | Minus |
BS07337.pep Sequence
Translation from 16 to 849
> BS07337.pep
MEEPKSVPTAELPSTSTGASSSSSTLSNNVSYDKIAWTRDITEPLAEESS
TSQLRPLGTSIPTNSTASELKKSNTSYSFTGDYLSGGNKADLKGGYPFGG
TDTDTKANEKDKEKEHTADDSLYECNICLDTAKDAVVSMCGHLFCWPCLH
QWLLTRPNRKLCPVCKAAVDKDKVIPLYGRNSTHQEDPRNKVPPRPAGQR
TEPDPVPGFPGFGFGDGFHMSFGIGAFPFGFITSTLNFGEPRPPAANRGT
RQYEDEQTLSKLFSYLAVVWILWLFYA*
BS07337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8974-PE | 277 | CG8974-PE | 1..277 | 1..277 | 1501 | 100 | Plus |
CG8974-PD | 277 | CG8974-PD | 1..277 | 1..277 | 1501 | 100 | Plus |
CG8974-PB | 277 | CG8974-PB | 1..277 | 1..277 | 1501 | 100 | Plus |
CG8974-PA | 277 | CG8974-PA | 1..277 | 1..277 | 1501 | 100 | Plus |
CG8974-PC | 277 | CG8974-PC | 1..277 | 1..277 | 1501 | 100 | Plus |