Clone BS07338 Report

Search the DGRC for BS07338

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptSer7-RA
Protein status:BS07338.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07338.3prime Sequence

914 bp (865 high quality bases) assembled on 2006-01-06

> BS07338.3prime
ATGGTCTAGAAAGCTTTTAAATGCGATTGGCTCGAATGGTGCTTTCTATC
CAGTCCATGTAGCTGCTGACCCGGGTGTAAATTCCGGAAAACAACGCTGT
GCCACAGTGTTTCCGTCCAATGGAGACCACGCCGGCCAGATAGACATATC
GATTGCCGCTCGCCGTGTTTGCCTCTACGGTCAGTGGTCCGCCGGAGTCG
CCACTGCAGGAATCAACGCCAATCTCGCCGCCGGCACACATCTGACTATC
GGCGAGCGTAATCTTGGTGTCCTTGTAAAACGCCTCCTGGCACTGATCCT
GCGGCTGGATGTGCAGCATCGCCTTTTGCTTGATCTTGCTGCTGCCGCTG
GACTCGGTCTTGCCCCAGCCGGAAACATCGGCGGCTGAGCCGGCCAGCTG
ATTGGCATACCTGCCCCTCTGCGGTGGCAAACAGACGGGCTCCAGATTCT
GCATCTGCAGCCAGTTCACCGGACGTGATAAACGCAGCAGGGCTATATCG
TTTCTATAGTTCAATTCCGAGTACTGCGCATGCGGCAATATTCGATCGAT
GGTCACCCGGATATGCGGCGGAGCACATTCGCGTACGCCATTCAAATCAT
TCTCGCAATCCGGATCGGTGTCCCGATTCCATTCACCCAAAATGGCTGCG
GTGAGATTCCTGCCCATTGTGTGAATGCAGTGGGCGGCCGTTAAGAGCCA
TCTCTGGGCGATAAAGGATGCGCCGCACGCATAGTCCTTGCCACCGCTCA
CTGTCTCGTACTCCAGCAGAGTGGTCCACGGGAACTCGAAGAGTCCGGTA
TTATGACCACCGACCAAGCGAAACGAAAAGGCGGAGCCGCAGTACGGATG
CTCGGGCAGTTGGTCGATACGGCTGGGTGGGCGTGGCGTGGTGCGAGGCA
GCAGTTTCAGCGTT

BS07338.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2045-PA 1194 Ser7-RA 297..1194 914..17 4465 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-RA 1413 CG2045-RA 401..1298 914..17 4475 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9866058..9866955 914..17 4475 99.9 Minus
Blast to na_te.dros performed on 2015-02-02 19:04:32 has no hits.

BS07338.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:48 Download gff for BS07338.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-PA 297..1194 17..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:52 Download gff for BS07338.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2045-PA 297..1194 17..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:48:10 Download gff for BS07338.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 401..1307 9..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:04 Download gff for BS07338.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 401..1307 9..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:04 Download gff for BS07338.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9866058..9866959 16..914 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:48:10 Download gff for BS07338.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9760091..9760992 16..914 99 <- Minus

BS07338.5prime Sequence

791 bp (790 high quality bases) assembled on 2006-01-06

> BS07338.5prime
GAAGTTATCAGTCGACATGCTCCTGCTGATACCGCTTTTCCTGACCCTTT
TGGGGGCTGAGGCCCAGCAATTTGGCAAAGCTATCATGCATTTTGGCAAC
TGCAACTCGGTGGAATTCGGTAGGGGCACCTGTATCGAGAAGAAGGACTG
CGACTTTTATGCCGTAGATAAACTTATGGAATTGGCCAGCAAACAACAGT
GCTTCTCCCGCCAGCGACCCGATCTGGTTTGCTGCCCCCGCGAGACGAAT
ATTATACCGCCATTGGCACCCAGGATCAGTAATGGGACCACTAATGCCAC
GAGCAGCACCACAACGCTGAAACTGCTGCCTCGCACCACGCCACGCCCAC
CCAGCGGTATCGACCAACTGCCCGAGCATCCGTACTGCGGCTCCGCCTTT
TCGTTTCGCTTGGTCGGTGGTCATAATACCGGACTCTTCGAGTTCCCGTG
GACCACTCTGCTGGAGTACGAGACAGTGAGCGGTGGCAAGGACTATGCGT
GCGGCGCATCCTTTATCGCCCAGAGATGGCTCTTAACGGCCGCCCACTGC
ATTCACACAATGGGCAGGAATCTCACCGCAGCCATTTTGGGTGAATGGAA
TCGGGACACCGATCCGGATTGCGAGAATGATTTGAATGGCGTACGCGAAT
GTGCTCCGCCGCATATCCGGGTGACCATCGATCGAATATTGCCGCATGCG
CAGTACTCGGAATTGAACTATAGAAACGATATAGCCCTGCTGCGTTTATC
ACGTCCGGTGAACTGGCTGCAGATGCAGAATCTGGAGCCCG

BS07338.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2045-PA 1194 Ser7-RA 1..775 17..791 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-RA 1413 CG2045-RA 105..879 17..791 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9865971..9866536 226..791 2830 100 Plus
X 23542271 X 9865459..9865609 78..228 755 100 Plus
X 23542271 X 9865337..9865397 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:20:07 has no hits.

BS07338.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:49 Download gff for BS07338.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:53 Download gff for BS07338.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2045-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:25 Download gff for BS07338.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 98..879 8..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:24 Download gff for BS07338.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 98..879 8..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:24 Download gff for BS07338.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9865330..9865397 8..77 94 -> Plus
X 9865459..9865607 78..226 100 -> Plus
X 9865972..9866536 227..791 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:25 Download gff for BS07338.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9759363..9759430 8..77 94 -> Plus
arm_X 9759492..9759640 78..226 100 -> Plus
arm_X 9760005..9760569 227..791 100   Plus

BS07338.complete Sequence

1226 bp (1226 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635821

> BS07338.complete
GAAGTTATCAGTCGACATGCTCCTGCTGATACCGCTTTTCCTGACCCTTT
TGGGGGCTGAGGCCCAGCAATTTGGCAAAGCTATCATGCATTTTGGCAAC
TGCAACTCGGTGGAATTCGGTAGGGGCACCTGTATCGAGAAGAAGGACTG
CGACTTTTATGCCGTAGATAAACTTATGGAATTGGCCAGCAAACAACAGT
GCTTCTCCCGCCAGCGACCCGATCTGGTTTGCTGCCCCCGCGAGACGAAT
ATTATACCGCCATTGGCACCCAGGATCAGTAATGGGACCACTAATGCCAC
GAGCAGCACCACAACGCTGAAACTGCTGCCTCGCACCACGCCACGCCCAC
CCAGCGGTATCGACCAACTGCCCGAGCATCCGTACTGCGGCTCCGCCTTT
TCGTTTCGCTTGGTCGGTGGTCATAATACCGGACTCTTCGAGTTCCCGTG
GACCACTCTGCTGGAGTACGAGACAGTGAGCGGTGGCAAGGACTATGCGT
GCGGCGCATCCTTTATCGCCCAGAGATGGCTCTTAACGGCCGCCCACTGC
ATTCACACAATGGGCAGGAATCTCACCGCAGCCATTTTGGGTGAATGGAA
TCGGGACACCGATCCGGATTGCGAGAATGATTTGAATGGCGTACGCGAAT
GTGCTCCGCCGCATATCCGGGTGACCATCGATCGAATATTGCCGCATGCG
CAGTACTCGGAATTGAACTATAGAAACGATATAGCCCTGCTGCGTTTATC
ACGTCCGGTGAACTGGCTGCAGATGCAGAATCTGGAGCCCGTCTGTTTGC
CACCGCAGAGGGGCAGGTATGCCAATCAGCTGGCCGGCTCAGCCGCCGAT
GTTTCCGGCTGGGGCAAGACCGAGTCCAGCGGCAGCAGCAAGATCAAGCA
AAAGGCGATGCTGCACATCCAGCCGCAGGATCAGTGCCAGGAGGCGTTTT
ACAAGGACACCAAGATTACGCTCGCCGATAGTCAGATGTGTGCCGGCGGC
GAGATTGGCGTTGATTCCTGCAGTGGCGACTCCGGCGGACCACTGACCGT
AGAGGCAAACACGGCGAGCGGCAATCGATATGTCTATCTGGCCGGCGTGG
TCTCCATTGGACGGAAACACTGTGGCACAGCGTTGTTTTCCGGAATTTAC
ACCCGGGTCAGCAGCTACATGGACTGGATAGAAAGCACCATTCGAGCCAA
TCGCATTTAAAAGCTTTCTAGACCAT

BS07338.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-RA 1194 CG2045-PA 1..1194 17..1210 5970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-RA 1413 CG2045-RA 105..1298 17..1210 5970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9865971..9866955 226..1210 4925 100 Plus
X 23542271 X 9865459..9865609 78..228 755 100 Plus
X 23542271 X 9865337..9865397 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:34:52 has no hits.

BS07338.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:36 Download gff for BS07338.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 1..1194 17..1210 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:52 Download gff for BS07338.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 113..1322 8..1218 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:26 Download gff for BS07338.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 105..1296 17..1208 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:36 Download gff for BS07338.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 113..1322 8..1218 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:20 Download gff for BS07338.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 105..1296 17..1208 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:20 Download gff for BS07338.complete
Subject Subject Range Query Range Percent Splice Strand
X 9865337..9865397 17..77 100 -> Plus
X 9865459..9865607 78..226 100 -> Plus
X 9865972..9866953 227..1208 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:26 Download gff for BS07338.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9759370..9759430 17..77 100 -> Plus
arm_X 9759492..9759640 78..226 100 -> Plus
arm_X 9760005..9760986 227..1208 100   Plus

BS07338.pep Sequence

Translation from 16 to 1209

> BS07338.pep
MLLLIPLFLTLLGAEAQQFGKAIMHFGNCNSVEFGRGTCIEKKDCDFYAV
DKLMELASKQQCFSRQRPDLVCCPRETNIIPPLAPRISNGTTNATSSTTT
LKLLPRTTPRPPSGIDQLPEHPYCGSAFSFRLVGGHNTGLFEFPWTTLLE
YETVSGGKDYACGASFIAQRWLLTAAHCIHTMGRNLTAAILGEWNRDTDP
DCENDLNGVRECAPPHIRVTIDRILPHAQYSELNYRNDIALLRLSRPVNW
LQMQNLEPVCLPPQRGRYANQLAGSAADVSGWGKTESSGSSKIKQKAMLH
IQPQDQCQEAFYKDTKITLADSQMCAGGEIGVDSCSGDSGGPLTVEANTA
SGNRYVYLAGVVSIGRKHCGTALFSGIYTRVSSYMDWIESTIRANRI*

BS07338.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-PA 397 CG2045-PA 1..397 1..397 2128 100 Plus
ea-PA 392 CG4920-PA 6..392 4..394 643 37.3 Plus
MP1-PA 390 CG1102-PA 26..390 26..394 621 38.6 Plus
MP1-PC 399 CG1102-PC 26..399 26..394 616 38.5 Plus
SPE-PA 400 CG16705-PA 9..398 3..392 608 36.3 Plus