Clone Sequence Records
BS07338.3prime Sequence
914 bp (865 high quality bases) assembled on 2006-01-06
> BS07338.3prime
ATGGTCTAGAAAGCTTTTAAATGCGATTGGCTCGAATGGTGCTTTCTATC
CAGTCCATGTAGCTGCTGACCCGGGTGTAAATTCCGGAAAACAACGCTGT
GCCACAGTGTTTCCGTCCAATGGAGACCACGCCGGCCAGATAGACATATC
GATTGCCGCTCGCCGTGTTTGCCTCTACGGTCAGTGGTCCGCCGGAGTCG
CCACTGCAGGAATCAACGCCAATCTCGCCGCCGGCACACATCTGACTATC
GGCGAGCGTAATCTTGGTGTCCTTGTAAAACGCCTCCTGGCACTGATCCT
GCGGCTGGATGTGCAGCATCGCCTTTTGCTTGATCTTGCTGCTGCCGCTG
GACTCGGTCTTGCCCCAGCCGGAAACATCGGCGGCTGAGCCGGCCAGCTG
ATTGGCATACCTGCCCCTCTGCGGTGGCAAACAGACGGGCTCCAGATTCT
GCATCTGCAGCCAGTTCACCGGACGTGATAAACGCAGCAGGGCTATATCG
TTTCTATAGTTCAATTCCGAGTACTGCGCATGCGGCAATATTCGATCGAT
GGTCACCCGGATATGCGGCGGAGCACATTCGCGTACGCCATTCAAATCAT
TCTCGCAATCCGGATCGGTGTCCCGATTCCATTCACCCAAAATGGCTGCG
GTGAGATTCCTGCCCATTGTGTGAATGCAGTGGGCGGCCGTTAAGAGCCA
TCTCTGGGCGATAAAGGATGCGCCGCACGCATAGTCCTTGCCACCGCTCA
CTGTCTCGTACTCCAGCAGAGTGGTCCACGGGAACTCGAAGAGTCCGGTA
TTATGACCACCGACCAAGCGAAACGAAAAGGCGGAGCCGCAGTACGGATG
CTCGGGCAGTTGGTCGATACGGCTGGGTGGGCGTGGCGTGGTGCGAGGCA
GCAGTTTCAGCGTT
BS07338.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2045-PA | 1194 | Ser7-RA | 297..1194 | 914..17 | 4465 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser7-RA | 1413 | CG2045-RA | 401..1298 | 914..17 | 4475 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9866058..9866955 | 914..17 | 4475 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:04:32 has no hits.
BS07338.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:48 Download gff for
BS07338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-PA | 297..1194 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:52 Download gff for
BS07338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2045-PA | 297..1194 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:48:10 Download gff for
BS07338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-RA | 401..1307 | 9..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:04 Download gff for
BS07338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-RA | 401..1307 | 9..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:04 Download gff for
BS07338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9866058..9866959 | 16..914 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:48:10 Download gff for
BS07338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9760091..9760992 | 16..914 | 99 | <- | Minus |
BS07338.5prime Sequence
791 bp (790 high quality bases) assembled on 2006-01-06
> BS07338.5prime
GAAGTTATCAGTCGACATGCTCCTGCTGATACCGCTTTTCCTGACCCTTT
TGGGGGCTGAGGCCCAGCAATTTGGCAAAGCTATCATGCATTTTGGCAAC
TGCAACTCGGTGGAATTCGGTAGGGGCACCTGTATCGAGAAGAAGGACTG
CGACTTTTATGCCGTAGATAAACTTATGGAATTGGCCAGCAAACAACAGT
GCTTCTCCCGCCAGCGACCCGATCTGGTTTGCTGCCCCCGCGAGACGAAT
ATTATACCGCCATTGGCACCCAGGATCAGTAATGGGACCACTAATGCCAC
GAGCAGCACCACAACGCTGAAACTGCTGCCTCGCACCACGCCACGCCCAC
CCAGCGGTATCGACCAACTGCCCGAGCATCCGTACTGCGGCTCCGCCTTT
TCGTTTCGCTTGGTCGGTGGTCATAATACCGGACTCTTCGAGTTCCCGTG
GACCACTCTGCTGGAGTACGAGACAGTGAGCGGTGGCAAGGACTATGCGT
GCGGCGCATCCTTTATCGCCCAGAGATGGCTCTTAACGGCCGCCCACTGC
ATTCACACAATGGGCAGGAATCTCACCGCAGCCATTTTGGGTGAATGGAA
TCGGGACACCGATCCGGATTGCGAGAATGATTTGAATGGCGTACGCGAAT
GTGCTCCGCCGCATATCCGGGTGACCATCGATCGAATATTGCCGCATGCG
CAGTACTCGGAATTGAACTATAGAAACGATATAGCCCTGCTGCGTTTATC
ACGTCCGGTGAACTGGCTGCAGATGCAGAATCTGGAGCCCG
BS07338.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2045-PA | 1194 | Ser7-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser7-RA | 1413 | CG2045-RA | 105..879 | 17..791 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9865971..9866536 | 226..791 | 2830 | 100 | Plus |
X | 23542271 | X | 9865459..9865609 | 78..228 | 755 | 100 | Plus |
X | 23542271 | X | 9865337..9865397 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:20:07 has no hits.
BS07338.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:49 Download gff for
BS07338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:53 Download gff for
BS07338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2045-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:25 Download gff for
BS07338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-RA | 98..879 | 8..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:24 Download gff for
BS07338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-RA | 98..879 | 8..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:24 Download gff for
BS07338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9865330..9865397 | 8..77 | 94 | -> | Plus |
X | 9865459..9865607 | 78..226 | 100 | -> | Plus |
X | 9865972..9866536 | 227..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:25 Download gff for
BS07338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9759363..9759430 | 8..77 | 94 | -> | Plus |
arm_X | 9759492..9759640 | 78..226 | 100 | -> | Plus |
arm_X | 9760005..9760569 | 227..791 | 100 | | Plus |
BS07338.complete Sequence
1226 bp (1226 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635821
> BS07338.complete
GAAGTTATCAGTCGACATGCTCCTGCTGATACCGCTTTTCCTGACCCTTT
TGGGGGCTGAGGCCCAGCAATTTGGCAAAGCTATCATGCATTTTGGCAAC
TGCAACTCGGTGGAATTCGGTAGGGGCACCTGTATCGAGAAGAAGGACTG
CGACTTTTATGCCGTAGATAAACTTATGGAATTGGCCAGCAAACAACAGT
GCTTCTCCCGCCAGCGACCCGATCTGGTTTGCTGCCCCCGCGAGACGAAT
ATTATACCGCCATTGGCACCCAGGATCAGTAATGGGACCACTAATGCCAC
GAGCAGCACCACAACGCTGAAACTGCTGCCTCGCACCACGCCACGCCCAC
CCAGCGGTATCGACCAACTGCCCGAGCATCCGTACTGCGGCTCCGCCTTT
TCGTTTCGCTTGGTCGGTGGTCATAATACCGGACTCTTCGAGTTCCCGTG
GACCACTCTGCTGGAGTACGAGACAGTGAGCGGTGGCAAGGACTATGCGT
GCGGCGCATCCTTTATCGCCCAGAGATGGCTCTTAACGGCCGCCCACTGC
ATTCACACAATGGGCAGGAATCTCACCGCAGCCATTTTGGGTGAATGGAA
TCGGGACACCGATCCGGATTGCGAGAATGATTTGAATGGCGTACGCGAAT
GTGCTCCGCCGCATATCCGGGTGACCATCGATCGAATATTGCCGCATGCG
CAGTACTCGGAATTGAACTATAGAAACGATATAGCCCTGCTGCGTTTATC
ACGTCCGGTGAACTGGCTGCAGATGCAGAATCTGGAGCCCGTCTGTTTGC
CACCGCAGAGGGGCAGGTATGCCAATCAGCTGGCCGGCTCAGCCGCCGAT
GTTTCCGGCTGGGGCAAGACCGAGTCCAGCGGCAGCAGCAAGATCAAGCA
AAAGGCGATGCTGCACATCCAGCCGCAGGATCAGTGCCAGGAGGCGTTTT
ACAAGGACACCAAGATTACGCTCGCCGATAGTCAGATGTGTGCCGGCGGC
GAGATTGGCGTTGATTCCTGCAGTGGCGACTCCGGCGGACCACTGACCGT
AGAGGCAAACACGGCGAGCGGCAATCGATATGTCTATCTGGCCGGCGTGG
TCTCCATTGGACGGAAACACTGTGGCACAGCGTTGTTTTCCGGAATTTAC
ACCCGGGTCAGCAGCTACATGGACTGGATAGAAAGCACCATTCGAGCCAA
TCGCATTTAAAAGCTTTCTAGACCAT
BS07338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser7-RA | 1194 | CG2045-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser7-RA | 1413 | CG2045-RA | 105..1298 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9865971..9866955 | 226..1210 | 4925 | 100 | Plus |
X | 23542271 | X | 9865459..9865609 | 78..228 | 755 | 100 | Plus |
X | 23542271 | X | 9865337..9865397 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:34:52 has no hits.
BS07338.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:36 Download gff for
BS07338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-RA | 1..1194 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:52 Download gff for
BS07338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-RA | 113..1322 | 8..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:26 Download gff for
BS07338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-RA | 105..1296 | 17..1208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:36 Download gff for
BS07338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-RA | 113..1322 | 8..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:20 Download gff for
BS07338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser7-RA | 105..1296 | 17..1208 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:20 Download gff for
BS07338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9865337..9865397 | 17..77 | 100 | -> | Plus |
X | 9865459..9865607 | 78..226 | 100 | -> | Plus |
X | 9865972..9866953 | 227..1208 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:26 Download gff for
BS07338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9759370..9759430 | 17..77 | 100 | -> | Plus |
arm_X | 9759492..9759640 | 78..226 | 100 | -> | Plus |
arm_X | 9760005..9760986 | 227..1208 | 100 | | Plus |
BS07338.pep Sequence
Translation from 16 to 1209
> BS07338.pep
MLLLIPLFLTLLGAEAQQFGKAIMHFGNCNSVEFGRGTCIEKKDCDFYAV
DKLMELASKQQCFSRQRPDLVCCPRETNIIPPLAPRISNGTTNATSSTTT
LKLLPRTTPRPPSGIDQLPEHPYCGSAFSFRLVGGHNTGLFEFPWTTLLE
YETVSGGKDYACGASFIAQRWLLTAAHCIHTMGRNLTAAILGEWNRDTDP
DCENDLNGVRECAPPHIRVTIDRILPHAQYSELNYRNDIALLRLSRPVNW
LQMQNLEPVCLPPQRGRYANQLAGSAADVSGWGKTESSGSSKIKQKAMLH
IQPQDQCQEAFYKDTKITLADSQMCAGGEIGVDSCSGDSGGPLTVEANTA
SGNRYVYLAGVVSIGRKHCGTALFSGIYTRVSSYMDWIESTIRANRI*
BS07338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser7-PA | 397 | CG2045-PA | 1..397 | 1..397 | 2128 | 100 | Plus |
ea-PA | 392 | CG4920-PA | 6..392 | 4..394 | 643 | 37.3 | Plus |
MP1-PA | 390 | CG1102-PA | 26..390 | 26..394 | 621 | 38.6 | Plus |
MP1-PC | 399 | CG1102-PC | 26..399 | 26..394 | 616 | 38.5 | Plus |
SPE-PA | 400 | CG16705-PA | 9..398 | 3..392 | 608 | 36.3 | Plus |