Clone Sequence Records
BS07339.3prime Sequence
951 bp (810 high quality bases) assembled on 2006-01-06
> BS07339.3prime
ATGGTCTAGAAAGCTTTCAGACACTTTTGTTGATCAGTTTCTTGCGAATG
GTCTCGTCCAGCGGTGGAATCGCCTCGCGGGGAATCAGAAAAGTGGACAG
ATTGAACAGATCCAGAAACACCTTGTACCGATCACTGAGAGTGGAGCGCA
GATATTGATATCCAGACGAGCCACCAGTGCCCAACTGTTGGGATCCAATC
ATGCGTTGCACCATGATCACGTGATTGTATCTCCACTTGGTTATTAACGA
GTCGATGTCCATGAGCAGGGTGAGCAACTGGTGTGGCTGGCTGAATCTGG
GTTCATCCCTATAGAAGGTGATCATGATGGCTCCCTGGAGGGCACGATGG
CTAAACCGGCGATCCCCACGTCGCACCAGTGCATCGTGCACTGCCGGATC
AAAGATGGAGCGATACACCTCGCGTCGCTTCTCAATGTCCATGAGGCGGT
AGTTTTTCGCCTTCTCCACGGGCTCCTCCATGGCGCTCTGTACCTGCGCC
TCCAGGAATCGATCGACGCTCTCCTGAAACTTGGCCCAGAAGTTGAAGCC
ACTCTCCTCCAGTCCGGGCGTCCTCTCCAGCCATCGCTGCACTAGCTCCA
GTAGCGAGGGATCTTTCTCCGAGTTGCGAATCGAATTCCGCGCCTCCTCG
TCGCTAAAGACATCCGAGTACTTCTGGTTGTATCTCACCCGCTGCTCTGT
CAGAACTCCCAGCTTGTTCTCGATCAAACGGAACTGCAGCGACTGGAAAC
CAGATGCGGGTGCCAGGTACTTGCGGAAGTCCATGAAGTCAAGCGGGGTC
ATGGTCTCCAGAATGGGCACTTGGTCCACCAGGAGTTTTAGAATCAGAAC
CACTCGGTTCAGTCGCTTGACAATCTCCAGCGTCTTGGTTTCATCGATGA
CCTCTGCATCAACATGTCTCGTATGGAGTCGAACTCAAAGATGATCTGCT
T
BS07339.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2155-PA | 1140 | v-RA | 247..1140 | 910..17 | 4470 | 100 | Minus |
CG2155-PA | 1140 | v-RA | 205..246 | 951..910 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
v-RA | 1305 | CG2155-RA | 261..1196 | 951..17 | 4655 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10924536..10925142 | 835..229 | 3035 | 100 | Minus |
X | 23542271 | X | 10925401..10925522 | 138..17 | 610 | 100 | Minus |
X | 23542271 | X | 10924365..10924481 | 951..836 | 535 | 99.1 | Minus |
X | 23542271 | X | 10925234..10925327 | 228..135 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:14:18 has no hits.
BS07339.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:09:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:55 Download gff for
BS07339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2155-PA | 205..1140 | 17..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:59 Download gff for
BS07339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 261..1196 | 17..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:53 Download gff for
BS07339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 261..1196 | 17..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:53 Download gff for
BS07339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10924365..10924481 | 836..951 | 99 | -> | Minus |
X | 10924536..10925142 | 229..835 | 100 | -> | Minus |
X | 10925234..10925327 | 135..228 | 100 | -> | Minus |
X | 10925405..10925522 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:59 Download gff for
BS07339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10818398..10818514 | 836..951 | 99 | -> | Minus |
arm_X | 10818569..10819175 | 229..835 | 100 | -> | Minus |
arm_X | 10819267..10819360 | 135..228 | 100 | -> | Minus |
arm_X | 10819438..10819555 | 17..134 | 100 | | Minus |
BS07339.5prime Sequence
937 bp (872 high quality bases) assembled on 2006-01-06
> BS07339.5prime
GAAGTTATCAGTCGACATGAGCTGTCCCTATGCAGGAAACGGAAACGATC
ACGATGATTCGGCGGTGCCATTAACCACGGAAGTGGGCAAAATCTATGGA
GAGTATCTGATGCTGGACAAACTGCTGGATGCCCAGTGTATGCTCTCCGA
GGAGGACAAGCGACCCGTGCACGATGAGCATCTGTTCATCATCACGCACC
AGGCCTACGAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATA
CGAGACATGTTGGATGCAGAGGTCATCGATGAAACCAAGACGCTGGAGAT
TGTCAAGCGACTGAACCGAGTGGTTCTGATTCTAAAACTCCTGGTGGACC
AAGTGCCCATTCTGGAGACCATGACCCCGCTTGACTTCATGGACTTCCGC
AAGTACCTGGCACCCGCATCTGGTTTCCAGTCGCTGCAGTTCCGTTTGAT
CGAGAACAAGCTGGGAGTTCTGACAGAGCAGCGGGTGAGATACAACCAGA
AGTACTCGGATGTCTTTAGCGACGAGGAGGCGCGGAATTCGATTCGCAAC
TCGGAGAAAGATCCCTCGCTACTGGAGCTAGTGCAGCGATGGCTGGAGAG
GACGCCCGGACTGGAGGAGAGTGGCTTCAACTTCTGGGCCAAGTTTCAGG
AGAGCGTCGATCGATTCCTGGAGGCGCAGGTACAGAGCGCCATGGAGGAG
CCCGTGGAGAAGGCGAAAAACTACCGCCTCATGGACATTGAGAAGCGACG
CGAGGTGTATCGCTCCATCTTTGATCCGGCAGTGCACGATGCACTGGTGC
GACGTGNGGATCGCCGGTTTAGCCATCGTGCCCTCAGGGAGCCATCATGA
TCACCTTCTATAGGGATGAACCCAGATTCAGCCAGCCACACCAGTTGCTC
ACCCTGCTCATGAACATCGACTCGTTAATAACCAAGT
BS07339.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2155-PA | 1140 | v-RA | 1..819 | 17..835 | 4076 | 99.8 | Plus |
CG2155-PA | 1140 | v-RA | 820..922 | 835..937 | 490 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
v-RA | 1305 | CG2155-RA | 56..978 | 16..937 | 4564 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10924536..10925136 | 338..937 | 2929 | 99.5 | Plus |
X | 23542271 | X | 10924126..10924287 | 42..203 | 810 | 100 | Plus |
X | 23542271 | X | 10924347..10924481 | 203..337 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:27:12 has no hits.
BS07339.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:09:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:56 Download gff for
BS07339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2155-PA | 1..922 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:25 Download gff for
BS07339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 56..978 | 16..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:41 Download gff for
BS07339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 56..978 | 16..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:41 Download gff for
BS07339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10924027..10924053 | 16..42 | 100 | -> | Plus |
X | 10924127..10924287 | 43..203 | 100 | -> | Plus |
X | 10924348..10924481 | 204..337 | 100 | -> | Plus |
X | 10924536..10925136 | 338..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:25 Download gff for
BS07339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10818060..10818086 | 16..42 | 100 | -> | Plus |
arm_X | 10818160..10818320 | 43..203 | 100 | -> | Plus |
arm_X | 10818381..10818514 | 204..337 | 100 | -> | Plus |
arm_X | 10818569..10819169 | 338..937 | 99 | | Plus |
BS07339.complete Sequence
1172 bp (1172 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635822
> BS07339.complete
GAAGTTATCAGTCGACATGAGCTGTCCCTATGCAGGAAACGGAAACGATC
ACGATGATTCGGCGGTGCCATTAACCACGGAAGTGGGCAAAATCTATGGA
GAGTATCTGATGCTGGACAAACTGCTGGATGCCCAGTGTATGCTCTCCGA
GGAGGACAAGCGACCCGTGCACGATGAGCATCTGTTCATCATCACGCACC
AGGCCTACGAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATA
CGAGACATGTTGGATGCAGAGGTCATCGATGAAACCAAGACGCTGGAGAT
TGTCAAGCGACTGAACCGAGTGGTTCTGATTCTAAAACTCCTGGTGGACC
AAGTGCCCATTCTGGAGACCATGACCCCGCTTGACTTCATGGACTTCCGC
AAGTACCTGGCACCCGCATCTGGTTTCCAGTCGCTGCAGTTCCGTTTGAT
CGAGAACAAGCTGGGAGTTCTGACAGAGCAGCGGGTGAGATACAACCAGA
AGTACTCGGATGTCTTTAGCGACGAGGAGGCGCGGAATTCGATTCGCAAC
TCGGAGAAAGATCCCTCGCTACTGGAGCTAGTGCAGCGATGGCTGGAGAG
GACGCCCGGACTGGAGGAGAGTGGCTTCAACTTCTGGGCCAAGTTTCAGG
AGAGCGTCGATCGATTCCTGGAGGCGCAGGTACAGAGCGCCATGGAGGAG
CCCGTGGAGAAGGCGAAAAACTACCGCCTCATGGACATTGAGAAGCGACG
CGAGGTGTATCGCTCCATCTTTGATCCGGCAGTGCACGATGCACTGGTGC
GACGTGGGGATCGCCGGTTTAGCCATCGTGCCCTCCAGGGAGCCATCATG
ATCACCTTCTATAGGGATGAACCCAGATTCAGCCAGCCACACCAGTTGCT
CACCCTGCTCATGGACATCGACTCGTTAATAACCAAGTGGAGATACAATC
ACGTGATCATGGTGCAACGCATGATTGGATCCCAACAGTTGGGCACTGGT
GGCTCGTCTGGATATCAATATCTGCGCTCCACTCTCAGTGATCGGTACAA
GGTGTTTCTGGATCTGTTCAATCTGTCCACTTTTCTGATTCCCCGCGAGG
CGATTCCACCGCTGGACGAGACCATTCGCAAGAAACTGATCAACAAAAGT
GTCTGAAAGCTTTCTAGACCAT
BS07339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
v-RA | 1140 | CG2155-PA | 1..1140 | 17..1156 | 5700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
v-RA | 1305 | CG2155-RA | 56..1196 | 16..1156 | 5705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10924536..10925142 | 338..944 | 3035 | 100 | Plus |
X | 23542271 | X | 10924126..10924287 | 42..203 | 810 | 100 | Plus |
X | 23542271 | X | 10924347..10924481 | 203..337 | 675 | 100 | Plus |
X | 23542271 | X | 10925401..10925522 | 1035..1156 | 610 | 100 | Plus |
X | 23542271 | X | 10925234..10925327 | 945..1038 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:11:20 has no hits.
BS07339.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:01 Download gff for
BS07339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 1..1140 | 17..1156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:18 Download gff for
BS07339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 38..1178 | 16..1156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:37 Download gff for
BS07339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 57..1195 | 17..1155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:01 Download gff for
BS07339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 38..1178 | 16..1156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:48 Download gff for
BS07339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 57..1195 | 17..1155 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:48 Download gff for
BS07339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10924348..10924481 | 204..337 | 100 | -> | Plus |
X | 10924028..10924053 | 17..42 | 100 | -> | Plus |
X | 10924127..10924287 | 43..203 | 100 | -> | Plus |
X | 10924536..10925142 | 338..944 | 100 | -> | Plus |
X | 10925234..10925327 | 945..1038 | 100 | -> | Plus |
X | 10925405..10925521 | 1039..1155 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:37 Download gff for
BS07339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10818061..10818086 | 17..42 | 100 | -> | Plus |
arm_X | 10818160..10818320 | 43..203 | 100 | -> | Plus |
arm_X | 10818381..10818514 | 204..337 | 100 | -> | Plus |
arm_X | 10818569..10819175 | 338..944 | 100 | -> | Plus |
arm_X | 10819267..10819360 | 945..1038 | 100 | -> | Plus |
arm_X | 10819438..10819554 | 1039..1155 | 100 | | Plus |
BS07339.pep Sequence
Translation from 16 to 1155
> BS07339.pep
MSCPYAGNGNDHDDSAVPLTTEVGKIYGEYLMLDKLLDAQCMLSEEDKRP
VHDEHLFIITHQAYELWFKQIIFEFDSIRDMLDAEVIDETKTLEIVKRLN
RVVLILKLLVDQVPILETMTPLDFMDFRKYLAPASGFQSLQFRLIENKLG
VLTEQRVRYNQKYSDVFSDEEARNSIRNSEKDPSLLELVQRWLERTPGLE
ESGFNFWAKFQESVDRFLEAQVQSAMEEPVEKAKNYRLMDIEKRREVYRS
IFDPAVHDALVRRGDRRFSHRALQGAIMITFYRDEPRFSQPHQLLTLLMD
IDSLITKWRYNHVIMVQRMIGSQQLGTGGSSGYQYLRSTLSDRYKVFLDL
FNLSTFLIPREAIPPLDETIRKKLINKSV*
BS07339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
v-PA | 379 | CG2155-PA | 1..379 | 1..379 | 1950 | 100 | Plus |