Clone BS07339 Report

Search the DGRC for BS07339

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptv-RA
Protein status:BS07339.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07339.3prime Sequence

951 bp (810 high quality bases) assembled on 2006-01-06

> BS07339.3prime
ATGGTCTAGAAAGCTTTCAGACACTTTTGTTGATCAGTTTCTTGCGAATG
GTCTCGTCCAGCGGTGGAATCGCCTCGCGGGGAATCAGAAAAGTGGACAG
ATTGAACAGATCCAGAAACACCTTGTACCGATCACTGAGAGTGGAGCGCA
GATATTGATATCCAGACGAGCCACCAGTGCCCAACTGTTGGGATCCAATC
ATGCGTTGCACCATGATCACGTGATTGTATCTCCACTTGGTTATTAACGA
GTCGATGTCCATGAGCAGGGTGAGCAACTGGTGTGGCTGGCTGAATCTGG
GTTCATCCCTATAGAAGGTGATCATGATGGCTCCCTGGAGGGCACGATGG
CTAAACCGGCGATCCCCACGTCGCACCAGTGCATCGTGCACTGCCGGATC
AAAGATGGAGCGATACACCTCGCGTCGCTTCTCAATGTCCATGAGGCGGT
AGTTTTTCGCCTTCTCCACGGGCTCCTCCATGGCGCTCTGTACCTGCGCC
TCCAGGAATCGATCGACGCTCTCCTGAAACTTGGCCCAGAAGTTGAAGCC
ACTCTCCTCCAGTCCGGGCGTCCTCTCCAGCCATCGCTGCACTAGCTCCA
GTAGCGAGGGATCTTTCTCCGAGTTGCGAATCGAATTCCGCGCCTCCTCG
TCGCTAAAGACATCCGAGTACTTCTGGTTGTATCTCACCCGCTGCTCTGT
CAGAACTCCCAGCTTGTTCTCGATCAAACGGAACTGCAGCGACTGGAAAC
CAGATGCGGGTGCCAGGTACTTGCGGAAGTCCATGAAGTCAAGCGGGGTC
ATGGTCTCCAGAATGGGCACTTGGTCCACCAGGAGTTTTAGAATCAGAAC
CACTCGGTTCAGTCGCTTGACAATCTCCAGCGTCTTGGTTTCATCGATGA
CCTCTGCATCAACATGTCTCGTATGGAGTCGAACTCAAAGATGATCTGCT
T

BS07339.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2155-PA 1140 v-RA 247..1140 910..17 4470 100 Minus
CG2155-PA 1140 v-RA 205..246 951..910 210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
v-RA 1305 CG2155-RA 261..1196 951..17 4655 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10924536..10925142 835..229 3035 100 Minus
X 23542271 X 10925401..10925522 138..17 610 100 Minus
X 23542271 X 10924365..10924481 951..836 535 99.1 Minus
X 23542271 X 10925234..10925327 228..135 470 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:14:18 has no hits.

BS07339.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:09:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:55 Download gff for BS07339.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2155-PA 205..1140 17..951 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:59 Download gff for BS07339.3prime
Subject Subject Range Query Range Percent Splice Strand
v-RA 261..1196 17..951 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:53 Download gff for BS07339.3prime
Subject Subject Range Query Range Percent Splice Strand
v-RA 261..1196 17..951 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:53 Download gff for BS07339.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10924365..10924481 836..951 99 -> Minus
X 10924536..10925142 229..835 100 -> Minus
X 10925234..10925327 135..228 100 -> Minus
X 10925405..10925522 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:59 Download gff for BS07339.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10818398..10818514 836..951 99 -> Minus
arm_X 10818569..10819175 229..835 100 -> Minus
arm_X 10819267..10819360 135..228 100 -> Minus
arm_X 10819438..10819555 17..134 100   Minus

BS07339.5prime Sequence

937 bp (872 high quality bases) assembled on 2006-01-06

> BS07339.5prime
GAAGTTATCAGTCGACATGAGCTGTCCCTATGCAGGAAACGGAAACGATC
ACGATGATTCGGCGGTGCCATTAACCACGGAAGTGGGCAAAATCTATGGA
GAGTATCTGATGCTGGACAAACTGCTGGATGCCCAGTGTATGCTCTCCGA
GGAGGACAAGCGACCCGTGCACGATGAGCATCTGTTCATCATCACGCACC
AGGCCTACGAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATA
CGAGACATGTTGGATGCAGAGGTCATCGATGAAACCAAGACGCTGGAGAT
TGTCAAGCGACTGAACCGAGTGGTTCTGATTCTAAAACTCCTGGTGGACC
AAGTGCCCATTCTGGAGACCATGACCCCGCTTGACTTCATGGACTTCCGC
AAGTACCTGGCACCCGCATCTGGTTTCCAGTCGCTGCAGTTCCGTTTGAT
CGAGAACAAGCTGGGAGTTCTGACAGAGCAGCGGGTGAGATACAACCAGA
AGTACTCGGATGTCTTTAGCGACGAGGAGGCGCGGAATTCGATTCGCAAC
TCGGAGAAAGATCCCTCGCTACTGGAGCTAGTGCAGCGATGGCTGGAGAG
GACGCCCGGACTGGAGGAGAGTGGCTTCAACTTCTGGGCCAAGTTTCAGG
AGAGCGTCGATCGATTCCTGGAGGCGCAGGTACAGAGCGCCATGGAGGAG
CCCGTGGAGAAGGCGAAAAACTACCGCCTCATGGACATTGAGAAGCGACG
CGAGGTGTATCGCTCCATCTTTGATCCGGCAGTGCACGATGCACTGGTGC
GACGTGNGGATCGCCGGTTTAGCCATCGTGCCCTCAGGGAGCCATCATGA
TCACCTTCTATAGGGATGAACCCAGATTCAGCCAGCCACACCAGTTGCTC
ACCCTGCTCATGAACATCGACTCGTTAATAACCAAGT

BS07339.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2155-PA 1140 v-RA 1..819 17..835 4076 99.8 Plus
CG2155-PA 1140 v-RA 820..922 835..937 490 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
v-RA 1305 CG2155-RA 56..978 16..937 4564 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10924536..10925136 338..937 2929 99.5 Plus
X 23542271 X 10924126..10924287 42..203 810 100 Plus
X 23542271 X 10924347..10924481 203..337 675 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:27:12 has no hits.

BS07339.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:09:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:56 Download gff for BS07339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2155-PA 1..922 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:25 Download gff for BS07339.5prime
Subject Subject Range Query Range Percent Splice Strand
v-RA 56..978 16..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:41 Download gff for BS07339.5prime
Subject Subject Range Query Range Percent Splice Strand
v-RA 56..978 16..937 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:41 Download gff for BS07339.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10924027..10924053 16..42 100 -> Plus
X 10924127..10924287 43..203 100 -> Plus
X 10924348..10924481 204..337 100 -> Plus
X 10924536..10925136 338..937 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:25 Download gff for BS07339.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10818060..10818086 16..42 100 -> Plus
arm_X 10818160..10818320 43..203 100 -> Plus
arm_X 10818381..10818514 204..337 100 -> Plus
arm_X 10818569..10819169 338..937 99   Plus

BS07339.complete Sequence

1172 bp (1172 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635822

> BS07339.complete
GAAGTTATCAGTCGACATGAGCTGTCCCTATGCAGGAAACGGAAACGATC
ACGATGATTCGGCGGTGCCATTAACCACGGAAGTGGGCAAAATCTATGGA
GAGTATCTGATGCTGGACAAACTGCTGGATGCCCAGTGTATGCTCTCCGA
GGAGGACAAGCGACCCGTGCACGATGAGCATCTGTTCATCATCACGCACC
AGGCCTACGAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATA
CGAGACATGTTGGATGCAGAGGTCATCGATGAAACCAAGACGCTGGAGAT
TGTCAAGCGACTGAACCGAGTGGTTCTGATTCTAAAACTCCTGGTGGACC
AAGTGCCCATTCTGGAGACCATGACCCCGCTTGACTTCATGGACTTCCGC
AAGTACCTGGCACCCGCATCTGGTTTCCAGTCGCTGCAGTTCCGTTTGAT
CGAGAACAAGCTGGGAGTTCTGACAGAGCAGCGGGTGAGATACAACCAGA
AGTACTCGGATGTCTTTAGCGACGAGGAGGCGCGGAATTCGATTCGCAAC
TCGGAGAAAGATCCCTCGCTACTGGAGCTAGTGCAGCGATGGCTGGAGAG
GACGCCCGGACTGGAGGAGAGTGGCTTCAACTTCTGGGCCAAGTTTCAGG
AGAGCGTCGATCGATTCCTGGAGGCGCAGGTACAGAGCGCCATGGAGGAG
CCCGTGGAGAAGGCGAAAAACTACCGCCTCATGGACATTGAGAAGCGACG
CGAGGTGTATCGCTCCATCTTTGATCCGGCAGTGCACGATGCACTGGTGC
GACGTGGGGATCGCCGGTTTAGCCATCGTGCCCTCCAGGGAGCCATCATG
ATCACCTTCTATAGGGATGAACCCAGATTCAGCCAGCCACACCAGTTGCT
CACCCTGCTCATGGACATCGACTCGTTAATAACCAAGTGGAGATACAATC
ACGTGATCATGGTGCAACGCATGATTGGATCCCAACAGTTGGGCACTGGT
GGCTCGTCTGGATATCAATATCTGCGCTCCACTCTCAGTGATCGGTACAA
GGTGTTTCTGGATCTGTTCAATCTGTCCACTTTTCTGATTCCCCGCGAGG
CGATTCCACCGCTGGACGAGACCATTCGCAAGAAACTGATCAACAAAAGT
GTCTGAAAGCTTTCTAGACCAT

BS07339.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
v-RA 1140 CG2155-PA 1..1140 17..1156 5700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
v-RA 1305 CG2155-RA 56..1196 16..1156 5705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10924536..10925142 338..944 3035 100 Plus
X 23542271 X 10924126..10924287 42..203 810 100 Plus
X 23542271 X 10924347..10924481 203..337 675 100 Plus
X 23542271 X 10925401..10925522 1035..1156 610 100 Plus
X 23542271 X 10925234..10925327 945..1038 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:11:20 has no hits.

BS07339.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:01 Download gff for BS07339.complete
Subject Subject Range Query Range Percent Splice Strand
v-RA 1..1140 17..1156 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:18 Download gff for BS07339.complete
Subject Subject Range Query Range Percent Splice Strand
v-RA 38..1178 16..1156 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:37 Download gff for BS07339.complete
Subject Subject Range Query Range Percent Splice Strand
v-RA 57..1195 17..1155 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:01 Download gff for BS07339.complete
Subject Subject Range Query Range Percent Splice Strand
v-RA 38..1178 16..1156 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:48 Download gff for BS07339.complete
Subject Subject Range Query Range Percent Splice Strand
v-RA 57..1195 17..1155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:48 Download gff for BS07339.complete
Subject Subject Range Query Range Percent Splice Strand
X 10924348..10924481 204..337 100 -> Plus
X 10924028..10924053 17..42 100 -> Plus
X 10924127..10924287 43..203 100 -> Plus
X 10924536..10925142 338..944 100 -> Plus
X 10925234..10925327 945..1038 100 -> Plus
X 10925405..10925521 1039..1155 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:37 Download gff for BS07339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10818061..10818086 17..42 100 -> Plus
arm_X 10818160..10818320 43..203 100 -> Plus
arm_X 10818381..10818514 204..337 100 -> Plus
arm_X 10818569..10819175 338..944 100 -> Plus
arm_X 10819267..10819360 945..1038 100 -> Plus
arm_X 10819438..10819554 1039..1155 100   Plus

BS07339.pep Sequence

Translation from 16 to 1155

> BS07339.pep
MSCPYAGNGNDHDDSAVPLTTEVGKIYGEYLMLDKLLDAQCMLSEEDKRP
VHDEHLFIITHQAYELWFKQIIFEFDSIRDMLDAEVIDETKTLEIVKRLN
RVVLILKLLVDQVPILETMTPLDFMDFRKYLAPASGFQSLQFRLIENKLG
VLTEQRVRYNQKYSDVFSDEEARNSIRNSEKDPSLLELVQRWLERTPGLE
ESGFNFWAKFQESVDRFLEAQVQSAMEEPVEKAKNYRLMDIEKRREVYRS
IFDPAVHDALVRRGDRRFSHRALQGAIMITFYRDEPRFSQPHQLLTLLMD
IDSLITKWRYNHVIMVQRMIGSQQLGTGGSSGYQYLRSTLSDRYKVFLDL
FNLSTFLIPREAIPPLDETIRKKLINKSV*

BS07339.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
v-PA 379 CG2155-PA 1..379 1..379 1950 100 Plus