Clone Sequence Records
BS07340.3prime Sequence
909 bp (818 high quality bases) assembled on 2006-01-06
> BS07340.3prime
ATGGTCTAGAAAGCTTCTATAGCTTCATCTTCATCTCCTCCAACATGCGA
TAGACCTTGACGAACTTCTTCTCCACCAACTCGGTGAATGTCTTGATCTC
ATTTCGCACCACCGAGAGTTCCATGGCAGCATCCGAGCCACCAGACTCAC
ACTTCTTCGACTGCTTGTCGCTCTCATACCAACAGGCAATGCCATCCACA
TAATCGTCCACCAATTCGGGTGCTGTTATATCCTCCATGAAGGAAATGTC
CTTGCGTTTCACAAACGAACTCATTAGAAGTTGCAGGAAATCGCAGTTCC
AGTTGTTCTGCTGAAAGTAGAAATACTGCAGCGCCTTCAAACTGTCGAAG
ATGGTGATCTTCAACGAGTATATAGAGTTTCCTGATATATCCAACATTTG
CAGATGGCTCTGTTTCTTGAACAATCCCTCTGGCAACTCGTGGGCACCGG
TGGCAGAAAGATTCAACCGCAATAGCGATGTGAATCTACGCAACGGATTA
CCCTGAAGGTTTCCCAATGGATTGTGCGACAAATCCAGACTGCTCACATT
GGCGGCCAGTGGAATGTGTGGCATTTCCCTCAGCGAGTTGTTGTGCAAAT
CCAGTTCATGGATCACTCCGTAGACGGTCAACCTCCTCAAATCGCAACTA
TGAGCTATAGCCACATCCAGCATGGTAAAGTTGAGTGTTAACTCCTGGAA
GATATTTCCAGAAATATCCAACTGCGTAAATACTGGCTGCAGCTTCAACA
GTTCCGATTCGAAGGCGGTGAACCGGTTTCTGGCCAGATTTAGTTTGGTA
AGGTTTAAATTCCGATCGAAGACGCCTCTTGGTAGAGCATCTAATCGATT
GCCAGCCCAATTTAGGTCCATTAGTTTCCTCATGCCGCTAAAACTCCTAG
AGAATTTGC
BS07340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11910-PA | 1416 | CG11910-RA | 540..1416 | 893..17 | 4360 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alrm-RA | 1717 | CG11910-RA | 631..1525 | 909..17 | 4410 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25381257..25382145 | 17..904 | 4380 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:02:20 has no hits.
BS07340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:52 Download gff for
BS07340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-PA | 522..1416 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:58:58 Download gff for
BS07340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-PA | 522..1416 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:28 Download gff for
BS07340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 631..1525 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:06 Download gff for
BS07340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 631..1525 | 17..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:06 Download gff for
BS07340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25381257..25382151 | 17..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:28 Download gff for
BS07340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21206979..21207873 | 17..909 | 99 | | Plus |
BS07340.5prime Sequence
876 bp (866 high quality bases) assembled on 2006-01-06
> BS07340.5prime
GAAGTTATCAGTCGACATGGCGGTACTCTGGTGGTTGCTCTCGTTGCAGG
TGGTGCTGATCTTACCGCCCAGTTACCACCTGGCCACGCCCTCCTCCGGG
AGCGGTCAATTGCGTCGTCTTTGGCTGCAGGATCATTGCAGTGCGGGAAT
TTGCACGAATGTCGTGATTGGTCGCAGTGATTATGTGATCCTATCACAGG
CCCCCATTGGGGGCACCACCATGCTCACCTTTCTGAACTCGAGCATTGCC
AAGATACCGCATTTGTTGTTCGACACCTTTCCGGATCTACAGGTTCTGCG
CATGGAAAACTGTTCGCTGGAAACTTTCGAAAAACCGCAGTTTGAAGGTG
CCAGCAATCTGATGAGCTTGTTCTTGGGATATAATCGCCTGAAGGATATA
CCTAAGAATATATTCTTGGGCGCAGACAATCTGGCCACATTGCATCTGCA
AGGAAATCAGTTGAAGCAGCTGGGAAATCATAGTTTCCATGCCTTGAAAG
AAGTGAAGGAACTTTCGCTGGCGGAAAATCAACTTGAGCAAATTTCTCTA
GGAGTTTTTAGCGGCATGAGGAAACTAATGGACCTAAATTTGGCTGGCAA
TCGATTAGATGCTCTACCAAGAGGCGTCTTCGATCGGAATTTAAACCTTA
CCAAACTAAATCTGGCCAGAAACCGGTTCACCGCCTTCGAATCGGAACTG
TTGAAGCTGCAGCCAGTATTTACGCAGTTGGATATTTCTGGAAATATCTT
CCAGGAGTTAACACTCAACTTTACCATGCTGGATGTGGCTATAGCTCATA
GTTGCGATTTGAGGAGGTTGACCGTCTACGGAGTGATCCATGAACTGGAT
TTGCACAACAACTCGCTGAGGGAAAT
BS07340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11910-PA | 1416 | CG11910-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alrm-RA | 1717 | CG11910-RA | 109..969 | 16..876 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25381813..25382673 | 876..16 | 4305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:37:02 has no hits.
BS07340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:54 Download gff for
BS07340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:00 Download gff for
BS07340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:31:12 Download gff for
BS07340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 99..969 | 7..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:40:37 Download gff for
BS07340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 99..969 | 7..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:40:37 Download gff for
BS07340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25381813..25382683 | 7..876 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:31:12 Download gff for
BS07340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21207535..21208405 | 7..876 | 99 | | Minus |
BS07340.complete Sequence
1448 bp (1448 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635823
> BS07340.complete
GAAGTTATCAGTCGACATGGCGGTACTCTGGTGGTTGCTCTCGTTGCAGG
TGGTGCTGATCTTACCGCCCAGTTACCACCTGGCCACGCCCTCCTCCGGG
AGCGGTCAATTGCGTCGTCTTTGGCTGCAGGATCATTGCAGTGCGGGAAT
TTGCACGAATGTCGTGATTGGTCGCAGTGATTATGTGATCCTATCACAGG
CCCCCATTGGGGGCACCACCATGCTCACCTTTCTGAACTCGAGCATTGCC
AAGATACCGCATTTGTTGTTCGACACCTTTCCGGATCTACAGGTTCTGCG
CATGGAAAACTGTTCGCTGGAAACTTTCGAAAAACCGCAGTTTGAAGGTG
CCAGCAATCTGATGAGCTTGTTCTTGGGATATAATCGCCTGAAGGATATA
CCTAAGAATATATTCTTGGGCGCAGACAATCTGGCCACATTGCATCTGCA
AGGAAATCAGTTGAAGCAGCTGGGAAATCATAGTTTCCATGCCTTGAAAG
AAGTGAAGGAACTTTCGCTGGCGGAAAATCAACTTGAGCAAATTTCTCTA
GGAGTTTTTAGCGGCATGAGGAAACTAATGGACCTAAATTTGGCTGGCAA
TCGATTAGATGCTCTACCAAGAGGCGTCTTCGATCGGAATTTAAACCTTA
CCAAACTAAATCTGGCCAGAAACCGGTTCACCGCCTTCGAATCGGAACTG
TTGAAGCTGCAGCCAGTATTTACGCAGTTGGATATTTCTGGAAATATCTT
CCAGGAGTTAACACTCAACTTTACCATGCTGGATGTGGCTATAGCTCATA
GTTGCGATTTGAGGAGGTTGACCGTCTACGGAGTGATCCATGAACTGGAT
TTGCACAACAACTCGCTGAGGGAAATGCCACACATTCCACTGGCCGCCAA
TGTGAGCAGTCTGGATTTGTCGCACAATCCATTGGGAAACCTTCAGGGTA
ATCCGTTGCGTAGATTCACATCGCTATTGCGGTTGAATCTTTCTGCCACC
GGTGCCCACGAGTTGCCAGAGGGATTGTTCAAGAAACAGAGCCATCTGCA
AATGTTGGATATATCAGGAAACTCTATATACTCGTTGAAGATCACCATCT
TCGACAGTTTGAAGGCGCTGCAGTATTTCTACTTTCAGCAGAACAACTGG
AACTGCGATTTCCTGCAACTTCTAATGAGTTCGTTTGTGAAACGCAAGGA
CATTTCCTTCATGGAGGATATAACAGCACCCGAATTGGTGGACGATTATG
TGGATGGCATTGCCTGTTGGTATGAGAGCGACAAGCAGTCGAAGAAGTGT
GAGTCTGGTGGCTCGGATGCTGCCATGGAACTCTCGGTGGTGCGAAATGA
GATCAAGACATTCACCGAGTTGGTGGAGAAGAAGTTCGTCAAGGTCTATC
GCATGTTGGAGGAGATGAAGATGAAGCTATAGAAGCTTTCTAGACCAT
BS07340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alrm-RA | 1416 | CG11910-PA | 1..1416 | 17..1432 | 7080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alrm-RA | 1717 | CG11910-RA | 109..1525 | 16..1432 | 7085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25381257..25382673 | 1432..16 | 7085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:25:34 has no hits.
BS07340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:43 Download gff for
BS07340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-RA | 1..1416 | 17..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:49 Download gff for
BS07340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-RA | 118..1544 | 7..1432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:34 Download gff for
BS07340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 110..1525 | 17..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:43 Download gff for
BS07340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-RA | 118..1544 | 7..1432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:24 Download gff for
BS07340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 110..1525 | 17..1432 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:24 Download gff for
BS07340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25381257..25382672 | 17..1432 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:34 Download gff for
BS07340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21206979..21208394 | 17..1432 | 100 | | Minus |
BS07340.pep Sequence
Translation from 16 to 1431
> BS07340.pep
MAVLWWLLSLQVVLILPPSYHLATPSSGSGQLRRLWLQDHCSAGICTNVV
IGRSDYVILSQAPIGGTTMLTFLNSSIAKIPHLLFDTFPDLQVLRMENCS
LETFEKPQFEGASNLMSLFLGYNRLKDIPKNIFLGADNLATLHLQGNQLK
QLGNHSFHALKEVKELSLAENQLEQISLGVFSGMRKLMDLNLAGNRLDAL
PRGVFDRNLNLTKLNLARNRFTAFESELLKLQPVFTQLDISGNIFQELTL
NFTMLDVAIAHSCDLRRLTVYGVIHELDLHNNSLREMPHIPLAANVSSLD
LSHNPLGNLQGNPLRRFTSLLRLNLSATGAHELPEGLFKKQSHLQMLDIS
GNSIYSLKITIFDSLKALQYFYFQQNNWNCDFLQLLMSSFVKRKDISFME
DITAPELVDDYVDGIACWYESDKQSKKCESGGSDAAMELSVVRNEIKTFT
ELVEKKFVKVYRMLEEMKMKL*
BS07340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alrm-PA | 471 | CG11910-PA | 1..471 | 1..471 | 2419 | 100 | Plus |
| CG10824-PA | 554 | CG10824-PA | 98..536 | 70..471 | 399 | 29.3 | Plus |
| CG4950-PB | 574 | CG4950-PB | 51..388 | 47..362 | 342 | 29.4 | Plus |
| CG4950-PC | 574 | CG4950-PC | 51..388 | 47..362 | 342 | 29.4 | Plus |
| CG16974-PB | 1257 | CG16974-PB | 258..616 | 51..419 | 276 | 27.8 | Plus |
