Clone Sequence Records
BS07341.3prime Sequence
885 bp (820 high quality bases) assembled on 2006-01-06
> BS07341.3prime
ATGGTCTAGAAAGCTTTTACAAAATTGAGCGGTGAGGTGTCAAGGGTCTA
GCTGGGTGCTTGGACCACAAGTAGCGGTTCTTCACCGGCGACAAGTACGA
ATCCCGGGCCACGGGGCTCGAGGCACGGGGCACCGAGGTGGCGCGGAAGG
GCACCAGGTCATCCACGTCCCACCAGAAGGGATCGCGCACAATCGAGGAG
ATCGGCAAGTTGGGGCTGGGGCTCAGCAGATCCCTGAAGCGGTTGCGTGG
GTGAAAGATGGGGAGTCGTTCAAAGAGTTCGTCCAGCGGCTCCAGGGAGC
TGGCACGGAAGCTGGGCCGCGTGAACGGGGCCAAGCTGGTGGCACGATCG
AAGACCGAGGGTCCTCCGCGTGGCACGCTGCCCTCGCGGTTCCAGTAGCT
CGGCGGTGGCACGTACGGCTCGCTGCCGGCACGGGTCGTCCTGGCAGGGC
GGAACGGCGAGGCCGAGCGACGAGCCTTGTTGAGCTCAGCCAGCAGCTTG
TCCTCTGGCTCGTACTCCAGGGGCACCAGCGAGTTGGGCGTGAGTGGCTT
GTCCCTCAAGTAGAGACCATAGCGAGATGGGTACCTGCGCTCGATCTCCT
GCATGCGCTTCAGATGATCATTCCAGGCCTTCTCTGCGTCGTAGTTAGCT
GGAATTGTTCGGCTGTAGTGATGATCGTAGATGGCACGGGGCGAGTAGCC
GTAGGTGTCGCGGCTCACTGGCAGATATCTGTAGCCAGAGGACTGGACGC
GCTCATTGGCGGTGGCGGGCTCGTCATAGATGCTCCTGTAGGAGGGCGAG
TCCAGGTAGGAGCTGTAGGGACGAGAGGCACGGGGCGCCTCGTGGGCACG
GATATCCTCGGAGCCCTTCAGGGACCTGATGTAAG
BS07341.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6803-PD | 939 | Zeelin1-RD | 73..939 | 883..17 | 4335 | 100 | Minus |
| CG6803-PB | 1098 | Zeelin1-RB | 73..689 | 883..267 | 3085 | 100 | Minus |
| CG6803-PE | 501 | Zeelin1-RE | 73..484 | 883..472 | 2060 | 100 | Minus |
| CG6803-PC | 507 | Zeelin1-RC | 73..481 | 883..475 | 2045 | 100 | Minus |
| CG6803-PB | 1098 | Zeelin1-RB | 845..1077 | 267..35 | 1165 | 100 | Minus |
| CG6803-PA | 474 | Zeelin1-RA | 73..301 | 883..655 | 1145 | 100 | Minus |
| CG6803-PA | 474 | Zeelin1-RA | 302..462 | 633..473 | 805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RD | 1783 | CG6803-RD | 187..1054 | 883..16 | 4340 | 100 | Minus |
| Mf-RJ | 1954 | CG6803-RJ | 187..1035 | 883..35 | 4245 | 100 | Minus |
| Mf-RF | 2020 | CG6803-RF | 253..1101 | 883..35 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15172600..15172830 | 37..267 | 1155 | 100 | Plus |
| 3R | 32079331 | 3R | 15178280..15178490 | 655..865 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 15174136..15174344 | 267..475 | 1045 | 100 | Plus |
| 3R | 32079331 | 3R | 15176184..15176295 | 475..586 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 15176362..15176437 | 583..658 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:05:19 has no hits.
BS07341.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:55 Download gff for
BS07341.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6803-PD | 71..939 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:01 Download gff for
BS07341.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6803-PD | 71..939 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:20:26 Download gff for
BS07341.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 185..1054 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:42 Download gff for
BS07341.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 185..1054 | 16..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:42 Download gff for
BS07341.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15178280..15178489 | 655..864 | 100 | <- | Plus |
| 3R | 15179039..15179058 | 865..885 | 95 | | Plus |
| 3R | 15171354..15171374 | 16..36 | 100 | <- | Plus |
| 3R | 15172600..15172830 | 37..267 | 100 | <- | Plus |
| 3R | 15174137..15174343 | 268..474 | 100 | <- | Plus |
| 3R | 15176184..15176293 | 475..584 | 100 | <- | Plus |
| 3R | 15176364..15176433 | 585..654 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:20:26 Download gff for
BS07341.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11004761..11004780 | 865..885 | 95 | | Plus |
| arm_3R | 10997076..10997096 | 16..36 | 100 | <- | Plus |
| arm_3R | 10998322..10998552 | 37..267 | 100 | <- | Plus |
| arm_3R | 10999859..11000065 | 268..474 | 100 | <- | Plus |
| arm_3R | 11001906..11002015 | 475..584 | 100 | <- | Plus |
| arm_3R | 11002086..11002155 | 585..654 | 100 | <- | Plus |
| arm_3R | 11004002..11004211 | 655..864 | 100 | <- | Plus |
BS07341.5prime Sequence
890 bp (837 high quality bases) assembled on 2006-01-06
> BS07341.5prime
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAG
CCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTCTGGT
GGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCGTGCC
TCGAGCCCCGTGGCCCGGGATTCGTACTTGTCGCCGGTGA
BS07341.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6803-PD | 939 | Zeelin1-RD | 1..874 | 17..890 | 4370 | 100 | Plus |
| CG6803-PB | 1098 | Zeelin1-RB | 1..689 | 17..705 | 3445 | 100 | Plus |
| CG6803-PE | 501 | Zeelin1-RE | 1..484 | 17..500 | 2420 | 100 | Plus |
| CG6803-PC | 507 | Zeelin1-RC | 1..481 | 17..497 | 2405 | 100 | Plus |
| CG6803-PA | 474 | Zeelin1-RA | 1..301 | 17..317 | 1505 | 100 | Plus |
| CG6803-PB | 1098 | Zeelin1-RB | 845..1030 | 705..890 | 930 | 100 | Plus |
| CG6803-PA | 474 | Zeelin1-RA | 302..462 | 339..499 | 805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RJ | 1954 | CG6803-RJ | 115..988 | 17..890 | 4370 | 100 | Plus |
| Mf-RF | 2020 | CG6803-RF | 181..1054 | 17..890 | 4370 | 100 | Plus |
| Mf-RD | 1783 | CG6803-RD | 115..988 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 15174136..15174344 | 705..497 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 15172645..15172830 | 890..705 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 15176184..15176295 | 497..386 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:23:01 has no hits.
BS07341.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:56 Download gff for
BS07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6803-PD | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:02 Download gff for
BS07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6803-PD | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:59:43 Download gff for
BS07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 105..987 | 7..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:16 Download gff for
BS07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 105..987 | 7..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:16 Download gff for
BS07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
| 3R | 15179039..15179139 | 7..107 | 96 | | Minus |
| 3R | 15172646..15172830 | 705..889 | 100 | <- | Minus |
| 3R | 15174137..15174343 | 498..704 | 100 | <- | Minus |
| 3R | 15176184..15176293 | 388..497 | 100 | <- | Minus |
| 3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:59:43 Download gff for
BS07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11001906..11002015 | 388..497 | 100 | <- | Minus |
| arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
| arm_3R | 10998368..10998552 | 705..889 | 100 | <- | Minus |
| arm_3R | 10999859..11000065 | 498..704 | 100 | <- | Minus |
| arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
| arm_3R | 11004761..11004861 | 7..107 | 96 | | Minus |
BS07341.complete Sequence
971 bp (971 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635824
> BS07341.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAG
CCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTCTGGT
GGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCGTGCC
TCGAGCCCCGTGGCCCGGGATTCGTACTTGTCGCCGGTGAAGAACCGCTA
CTTGTGGTCCAAGCACCCAGCTAGACCCTTGACACCTCACCGCTCAATTT
TGTAAAAGCTTTCTAGACCAT
BS07341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RD | 939 | CG6803-PD | 1..939 | 17..955 | 4695 | 100 | Plus |
| Mf-RJ | 942 | CG6803-PJ | 1..921 | 17..937 | 4605 | 100 | Plus |
| Mf-RF | 942 | CG6803-PF | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RD | 1783 | CG6803-RD | 115..1054 | 17..956 | 4700 | 100 | Plus |
| Mf-RJ | 1954 | CG6803-RJ | 115..1035 | 17..937 | 4605 | 100 | Plus |
| Mf-RF | 2020 | CG6803-RF | 181..1101 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15172600..15172830 | 935..705 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 15174136..15174344 | 705..497 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 15176184..15176295 | 497..386 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:37:21 has no hits.
BS07341.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:37 Download gff for
BS07341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 1..939 | 17..955 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:54 Download gff for
BS07341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 105..1054 | 7..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:39 Download gff for
BS07341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 120..1051 | 22..953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:37 Download gff for
BS07341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 105..1054 | 7..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:53 Download gff for
BS07341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 120..1051 | 22..953 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:53 Download gff for
BS07341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15171357..15171374 | 936..953 | 100 | <- | Minus |
| 3R | 15172600..15172830 | 705..935 | 100 | <- | Minus |
| 3R | 15174137..15174343 | 498..704 | 100 | <- | Minus |
| 3R | 15176184..15176293 | 388..497 | 100 | <- | Minus |
| 3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
| 3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
| 3R | 15179039..15179124 | 22..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:39 Download gff for
BS07341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10997079..10997096 | 936..953 | 100 | <- | Minus |
| arm_3R | 10998322..10998552 | 705..935 | 100 | <- | Minus |
| arm_3R | 10999859..11000065 | 498..704 | 100 | <- | Minus |
| arm_3R | 11001906..11002015 | 388..497 | 100 | <- | Minus |
| arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
| arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
| arm_3R | 11004761..11004846 | 22..107 | 100 | | Minus |
BS07341.pep Sequence
Translation from 16 to 954
> BS07341.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS
VFDRATSLAPFTRPSFRASSLEPLDELFERLPIFHPRNRFRDLLSPSPNL
PISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWSKH
PARPLTPHRSIL*
BS07341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-PD | 312 | CG6803-PD | 1..312 | 1..312 | 1672 | 100 | Plus |
| Mf-PJ | 313 | CG6803-PJ | 1..312 | 1..312 | 1648 | 98.7 | Plus |
| Mf-PF | 313 | CG6803-PF | 1..312 | 1..312 | 1648 | 98.7 | Plus |
| Mf-PO | 310 | CG6803-PO | 1..310 | 1..312 | 1644 | 99 | Plus |
| Mf-PM | 364 | CG6803-PM | 1..364 | 1..312 | 1609 | 85.7 | Plus |
