Clone Sequence Records
BS07343.3prime Sequence
926 bp (752 high quality bases) assembled on 2006-01-06
> BS07343.3prime
ATGGTCTAGAAAGCTTCTAGACACTATATGAAGCCTTTAGGTTGTTGAAA
TACTCCAGATCCTTGGCGCTGATCGAGGGCACAAACTTGTTGAAAGACTT
CGTGAAATCTTCCTCCTGCACAATTACGTTCTCCGGCACCAGTTCCTTCT
CTGATATTGTTCCACTCAAGTGTCCGTCTATGGTGCGCCTCACAGCGGAG
AGCCATGCATTCGAGCAGATGGAGTACAGATCTGCGCCGCTCATTTCGCT
CTTCAAACGCTCGGCAATCTGTTCCATGTCCACACCGGCGTCCAAAGCGA
ATCGCTGGGTTTGGGCACGCAAAACGGCTGCCTTGTCTTCGGCAGTTGAA
CAAGGTCCCACGTAGAAAAGCTTGTCAAAGCGACCAGGACGCAAAAGAGC
GGGGTCAATAAGATCCGGGCGATTGGTGGCGGCCAGAATGAATATGGGCT
TGCTAGTGTCGCCATCGCTCATTCCATCCATTTCTGCCAATAGCTGCGAC
ACCACCCTATCCATTACACCGCCAGAGTCCCCAGCCACACCTCGATTGGG
AGCCAGGGAATCCAGTTCGTCCAAGAAGAGTACACAAGGAGCCGCAGAAC
GAGCCCTGGAGAAGACCTCGCGAACATTCTGCTCGCTCTGGCCGACATAC
ATGTTTAGTAGCTCTGGACCTTGAACGGAAAGAAAACTCAGGTTGCACTC
AGTGGCGACAGCCTTGGCCACCAGGGTTTTGCCTGTTCCTGGGGGACCGT
AGAGCAGGATTCCCGATCTTCTTAGATTCTTGCCCATGAGGTGAACATGC
TTAAGCGGCAGACCAATGCTGCTCTGGATCTCATCTTTTAGCTTGGCTAG
ACCACCAATGTCCGACCAATAAACCTTCGGCACCTTGGGCGCACCCAAAC
TGTCCGCGAAAGAGCTCTGCATGTCA
BS07343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11919-PA | 2694 | CG11919-RA | 1785..2694 | 926..17 | 4550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex6-RD | 2820 | CG11919-RD | 1824..2734 | 926..16 | 4555 | 100 | Minus |
| Pex6-RC | 2953 | CG11919-RC | 1957..2867 | 926..16 | 4555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10882206..10883116 | 926..16 | 4555 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:14:05 has no hits.
BS07343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:09:59 Download gff for
BS07343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11919-PA | 1786..2694 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:07 Download gff for
BS07343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11919-PA | 1786..2694 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:57 Download gff for
BS07343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex6-RC | 1958..2867 | 16..925 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:52 Download gff for
BS07343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex6-RC | 1958..2867 | 16..925 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:52 Download gff for
BS07343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10882207..10883116 | 16..925 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:57 Download gff for
BS07343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6769712..6770621 | 16..925 | 100 | | Minus |
BS07343.5prime Sequence
942 bp (789 high quality bases) assembled on 2006-01-06
> BS07343.5prime
GAAGTTATCAGTCGACATGAATGAAAATGATGATGCGAAAAAAGTCGTCG
GCAAGCGGAATTCGGTGTCGTTCGATCAACAAGATCCAGGACAGCCGAGA
TTTAGCTTCTCTGGGAGAGTACAGGAGCTAGTCGAGGGCTACAATTCGGC
CATACAGCTGCTGGCGCCCAAGTGGCCCTGGTTCCTCTACCCCGGATATC
TGACATACGCCGTATACTGGCGTTACGCCAAATATTACAAGGGCAAGTTT
CTGCTGACCCCCATTCCGAACCGCCTCTACGATCTGCTGATCAAGAACGA
GCAGATTAAGTCGGAGCACCTGGTGTTCGCCAGTCAGGAGGTGTACGAAA
ACTATGCGGAATCGCCGGACGTCAACTTTGTCAACTTGGTTATCCGCGGC
AGGAGGGTAAGAATCGGTAAGCCGCTAGCTTCAGACGAAGGAAATATGAC
CCAAACGGTTATCAAGCAAATGCTCCAGGAGGCGCCGCATACGATTGTGG
CCCAGATCTTGCCGGCTGCACAGTGCCAACCCAATTGTCTGTACGTTCAG
GAGAACTTCTACGGCAACATATTGGATCGCTTTCAAATCCGCTCCAACTG
CTGGGTGCAGGTAGAGCATTTTGCCGATGAGCAGACAATACCTGGAATAG
CAACCAAAGCACATGTGTACTTAGTCGCAGATCCCCATGAACTTCCCGCC
GAACTGACAGAGGTCATCCTGAGCAACTATTTCAATACACCTCGACTCAT
GCATCGTGGACATACCTACCGCATCGAGGTGAACGCAGAGTTGGTGGGCA
CTGCGACTTATGCCCACTATTACCTGATATTCGCTCACCTACGCCACGTC
CACCTAAAGTGTATTCACCTGGAGACAAAGGGCAGCGAGTTCGAGCTGCA
AGCGATTGTTTGCAAAAACTTTAACAACCTTGTTCAAGTGCC
BS07343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11919-PA | 2694 | CG11919-RA | 1..926 | 17..942 | 4555 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex6-RC | 2953 | CG11919-RC | 173..1098 | 17..942 | 4585 | 99.7 | Plus |
| Pex6-RD | 2820 | CG11919-RD | 60..965 | 37..942 | 4485 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10880327..10880841 | 37..551 | 2575 | 100 | Plus |
| 2R | 25286936 | 2R | 10880899..10881295 | 546..942 | 1940 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:35:08 has no hits.
BS07343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:00 Download gff for
BS07343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11919-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:09 Download gff for
BS07343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11919-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:04 Download gff for
BS07343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex6-RC | 173..1098 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:56:55 Download gff for
BS07343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex6-RC | 173..1098 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:56:55 Download gff for
BS07343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10880249..10880269 | 17..37 | 100 | -> | Plus |
| 2R | 10880328..10880840 | 38..550 | 100 | -> | Plus |
| 2R | 10880904..10881295 | 551..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:04 Download gff for
BS07343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6767754..6767774 | 17..37 | 100 | -> | Plus |
| arm_2R | 6767833..6768345 | 38..550 | 100 | -> | Plus |
| arm_2R | 6768409..6768800 | 551..942 | 99 | | Plus |
BS07343.complete Sequence
2726 bp assembled on 2010-05-10
GenBank Submission: KX803679
> BS07343.complete
GAAGTTATCAGTCGACATGAATGAAAATGATGATGCGAAAAAAGTCGTCG
GCAAGCGGAATTCGGTGTCGTTCGATCAACAAGATCCAGGACAGCCGAGA
TTTAGCTTCTCTGGGAGAGTACAGGAGCTAGTCGAGGGCTACAATTCGGC
CATACAGCTGCTGGCGCCCAAGTGGCCCTGGTTCCTCTACCCCGGATATC
TGACATACGCCGTATACTGGCGTTACGCCAAATATTACAAGGGCAAGTTT
CTGCTGACCCCCATTCCGAACCGCCTCTACGATCTGCTGATCAAGAACGA
GCAGATTAAGTCGGAGCACCTGGTGTTCGCCAGTCAGGAGGTGTACGAAA
ACTATGCGGAATCGCCGGACGTCAACTTTGTCAACTTGGTTATCCGCGGC
AGGAGGGTAAGAATCGGTAAGCCGCTAGCTTCAGACGAAGGAAATATGAC
CCAAACGGTTATCAAGCAAATGCTCCAGGAGGCGCCGCATACGATTGTGG
CCCAGATCTTGCCGGCTGCACAGTGCCAACCCAATTGTCTGTACGTTCAG
GAGAACTTCTACGGCAACATATTGGATCGCTTTCAAATCCGCTCCAACTG
CTGGGTGCAGGTAGAGCATTTTGCCGATGAGCAGACAATACCTGGAATAG
CAACCAAAGCACATGTGTACTTAGTCGCAGATCCCCATGAACTTCCCGCC
GAACTGACAGAGGTCATCCTGAGCAACTATTTCAATACACCTCGACTCAT
GCATCGTGGACATACCTACCGCATCGAGGTGAACGCAGAGTTGGTGGGCA
CTGCGACTTATGCCCACTATTACCTGATATTCGCTCACCTACGCCACGTC
CACCTAAAGTGTATTCACCTGGAGACAAAGGGCAGCGAGTTCGAGCTGCA
AGCGATTGTTGCCAAAAACTTTAGCAACCTTGTTCAAGTGCCTGCATCTC
ACAGTTTCCTGCCTCGTCAAGTGCTTGACAGCATGGCCATCGTTGAGAAC
TATCCAAGTGGACTTCGAAAGCCCTATAAGCTGTTGCGCTCCTCAGTAGA
TGCTTTCCTGCCAAAAAAGTCCGCCTGCCTGTCGTCAAAGCACATATTTC
CTGTGTTCCTCCTGCAAGGCGAGCGAGGATCGGGCAAATCAAAGCTTGTG
AGCGCCGTAGCCCAAGAGTTGGGGATGCATATTTACGGAGCAGATTGCGC
AGAGATCGTTTCGCAAGTTCCCTCCCACACGGAGATGAAGCTAAAAGCCG
TATTTGCCAAGAGCCAAGTTTGTGAACCGCTTATGATTTGCTTCCATAAC
TTCGAGATTTTTGGCATAGACAACGAGGGTAACGAGGATCTGCGTCTGCT
TTCCGCCTTCCACGTGCAGGTCCAGGAACTCTTCAACAGGGACCGCAAGC
ATCCGATTGTAGTGGTGGCTTTGACCAGTGACAGACACCTTAAACCCATG
ATCCAAGGACTTTTCTTGGAGATCATAAACATTGACATGCCCAGCAAGGA
GGAGCGATTCGAGATTCTTCGCTGGATGCACGTGCGCGAGACTTTCAACG
ATATTATCTACAATCAGAAGGCTATTGAGCAATTACCCTTGTTCTCGCGG
GAAAATCAGTCGCAATTCATGCCACGCATTTCTCCCAGCTGGAGGGAAAC
CCTCAATGTCCTTCAGGATGTGGCTGCAAAGTCACAGGGCTTTCTGCTCG
GCGACCTTCAGTTGCTGTACGACAACGCGGTTCGCATGAAGATTCGCAAT
AGGTTGGGTAGGACCACCCTGGATATGTCTCACTTCGCCAAGAACCTCAC
TGACATGCAGAGCTCTTTCGCGGACAGTTTGGGTGCGCCCAAGGTGCCGA
AGGTTTATTGGTCGGACATTGGTGGTCTAGCCAAGCTAAAAGATGAGATC
CAGAGCAGCATTGGTCTGCCGCTTAAGCATGTTCACCTCATGGGCAAGAA
TCTAAGAAGATCGGGAATCCTGCTCTACGGTCCCCCAGGAACAGGCAAAA
CCCTGGTGGCCAAGGCTGTCGCCACTGAGTGCAACCTGAGTTTTCTTTCC
GTTCAAGGTCCAGAGCTACTAAACATGTATGTCGGCCAGAGCGAGCAGAA
TGTTCGCGAGGTCTTCTCCAGGGCTCGTTCTGCGGCTCCTTGTGTACTCT
TCTTGGACGAACTGGATTCCCTGGCTCCCAATCGAGGTGTGGCTGGGGAC
TCTGGCGGTGTAATGGATAGGGTGGTGTCGCAGCTATTGGCAGAAATGGA
TGGAATGAGCGATGGCGACACTAGCAAGCCCATATTCATTCTGGCCGCCA
CCAATCGCCCGGATCTTATTGACCCCGCTCTTTTGCGTCCTGGTCGCTTT
GACAAGCTTTTCTACGTGGGACCTTGTTCAACTGCCGAAGACAAGGCAGC
CGTTTTGCGTGCCCAAACCCAGCGATTCGCTTTGGACGCCGGTGTGGACA
TGGAACAGATTGCCGAGCGTTTGAAGAGCGAAATGAGCGGCGCAGATCTG
TACTCCATCTGCTCGAATGCATGGCTCTCCGCTGTGAGGCGCACCATAGA
CGGACACTTGAGTGGAACAATATCAGAGAAGGAACTGGTGCCGGAGAACG
TAATTGTGCAGGAGGAAGATTTCACGAAGTCTTTCAACAAGTTTGTGCCC
TCGATCAGCGCCAAGGATCTGGAGTATTTCAACAACCTAAAGGCTTCATA
TAGTGTCTAGAAGCTTTCTAGACCAT
BS07343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex6-RC | 2694 | CG11919-PC | 1..2694 | 17..2710 | 13470 | 100 | Plus |
| Pex6-RD | 2700 | CG11919-PD | 27..2700 | 37..2710 | 13370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex6-RC | 2953 | CG11919-RC | 173..2867 | 17..2711 | 13475 | 100 | Plus |
| Pex6-RD | 2820 | CG11919-RD | 60..2734 | 37..2711 | 13375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10881710..10883116 | 1305..2711 | 7035 | 100 | Plus |
| 2R | 25286936 | 2R | 10880899..10881659 | 546..1306 | 3805 | 100 | Plus |
| 2R | 25286936 | 2R | 10880327..10880841 | 37..551 | 2575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:56:58 has no hits.
BS07343.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:47 Download gff for
BS07343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18003-RA | 182..2875 | 17..2710 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:33 Download gff for
BS07343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex6-RC | 173..2866 | 17..2710 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:02 Download gff for
BS07343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex6-RC | 173..2866 | 17..2710 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:02 Download gff for
BS07343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10880249..10880269 | 17..37 | 100 | -> | Plus |
| 2R | 10880328..10880840 | 38..550 | 100 | -> | Plus |
| 2R | 10880904..10881659 | 551..1306 | 100 | -> | Plus |
| 2R | 10881712..10883115 | 1307..2710 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:33 Download gff for
BS07343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6767754..6767774 | 17..37 | 100 | -> | Plus |
| arm_2R | 6767833..6768345 | 38..550 | 100 | -> | Plus |
| arm_2R | 6768409..6769164 | 551..1306 | 100 | -> | Plus |
| arm_2R | 6769217..6770620 | 1307..2710 | 100 | | Plus |
BS07343.pep Sequence
Translation from 16 to 2709
> BS07343.pep
MNENDDAKKVVGKRNSVSFDQQDPGQPRFSFSGRVQELVEGYNSAIQLLA
PKWPWFLYPGYLTYAVYWRYAKYYKGKFLLTPIPNRLYDLLIKNEQIKSE
HLVFASQEVYENYAESPDVNFVNLVIRGRRVRIGKPLASDEGNMTQTVIK
QMLQEAPHTIVAQILPAAQCQPNCLYVQENFYGNILDRFQIRSNCWVQVE
HFADEQTIPGIATKAHVYLVADPHELPAELTEVILSNYFNTPRLMHRGHT
YRIEVNAELVGTATYAHYYLIFAHLRHVHLKCIHLETKGSEFELQAIVAK
NFSNLVQVPASHSFLPRQVLDSMAIVENYPSGLRKPYKLLRSSVDAFLPK
KSACLSSKHIFPVFLLQGERGSGKSKLVSAVAQELGMHIYGADCAEIVSQ
VPSHTEMKLKAVFAKSQVCEPLMICFHNFEIFGIDNEGNEDLRLLSAFHV
QVQELFNRDRKHPIVVVALTSDRHLKPMIQGLFLEIINIDMPSKEERFEI
LRWMHVRETFNDIIYNQKAIEQLPLFSRENQSQFMPRISPSWRETLNVLQ
DVAAKSQGFLLGDLQLLYDNAVRMKIRNRLGRTTLDMSHFAKNLTDMQSS
FADSLGAPKVPKVYWSDIGGLAKLKDEIQSSIGLPLKHVHLMGKNLRRSG
ILLYGPPGTGKTLVAKAVATECNLSFLSVQGPELLNMYVGQSEQNVREVF
SRARSAAPCVLFLDELDSLAPNRGVAGDSGGVMDRVVSQLLAEMDGMSDG
DTSKPIFILAATNRPDLIDPALLRPGRFDKLFYVGPCSTAEDKAAVLRAQ
TQRFALDAGVDMEQIAERLKSEMSGADLYSICSNAWLSAVRRTIDGHLSG
TISEKELVPENVIVQEEDFTKSFNKFVPSISAKDLEYFNNLKASYSV*
BS07343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex6-PC | 897 | CG11919-PC | 1..897 | 1..897 | 4639 | 100 | Plus |
| Pex6-PD | 899 | CG11919-PD | 10..899 | 8..897 | 4601 | 100 | Plus |
| TER94-PE | 825 | CG2331-PE | 264..747 | 365..868 | 668 | 34.5 | Plus |
| TER94-PD | 759 | CG2331-PD | 197..662 | 365..848 | 665 | 34.8 | Plus |
| TER94-PA | 801 | CG2331-PA | 239..704 | 365..848 | 665 | 34.8 | Plus |
| TER94-PD | 759 | CG2331-PD | 156..383 | 613..845 | 440 | 44.1 | Plus |
| TER94-PE | 825 | CG2331-PE | 223..450 | 613..845 | 440 | 44.1 | Plus |
